Wall clock time and date at job start Wed Apr 1 2020 02:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38231 * 120.00113 * 2 1 4 4 C 1.38232 * 120.00047 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99804 * 359.95521 * 4 3 2 6 6 C 1.50702 * 119.99738 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46940 * 90.00231 * 6 5 4 8 8 O 1.21285 * 119.99742 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00185 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00112 * 180.02562 * 9 7 6 11 11 C 1.52998 * 115.55128 * 180.02562 * 10 9 7 12 12 C 1.53037 * 109.46125 * 34.32395 * 11 10 9 13 13 C 1.53192 * 109.31435 * 178.61589 * 12 11 10 14 14 N 1.46920 * 108.77594 * 54.63629 * 13 12 11 15 15 C 1.36941 * 120.63091 * 126.36627 * 14 13 12 16 16 H 1.07996 * 120.00020 * 331.91607 * 15 14 13 17 17 C 1.38812 * 119.99995 * 151.91200 * 15 14 13 18 18 N 1.31621 * 119.99722 * 343.22679 * 17 15 14 19 19 Si 1.86797 * 120.00136 * 163.22713 * 17 15 14 20 20 H 1.48501 * 109.46972 * 60.00030 * 19 17 15 21 21 H 1.48503 * 109.47012 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47071 * 299.99984 * 19 17 15 23 23 C 1.46927 * 118.73991 * 306.64805 * 14 13 12 24 24 C 1.52764 * 109.01057 * 53.30243 * 23 14 13 25 25 C 1.53005 * 117.51679 * 325.69976 * 10 9 7 26 26 C 1.52999 * 60.00145 * 107.48350 * 25 10 9 27 27 C 1.38238 * 120.00046 * 0.27613 * 5 4 3 28 28 C 1.38227 * 119.99701 * 359.51491 * 27 5 4 29 29 H 1.09008 * 109.47238 * 90.00148 * 1 2 3 30 30 H 1.08999 * 109.47528 * 209.99615 * 1 2 3 31 31 H 1.09002 * 109.47336 * 330.00073 * 1 2 3 32 32 H 1.08000 * 119.99702 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.99685 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47614 * 330.00506 * 6 5 4 35 35 H 1.08996 * 109.47129 * 210.00206 * 6 5 4 36 36 H 0.96999 * 120.00288 * 0.02562 * 9 7 6 37 37 H 1.08997 * 109.45043 * 154.29501 * 11 10 9 38 38 H 1.09005 * 109.49265 * 58.66655 * 12 11 10 39 39 H 1.08999 * 109.49844 * 298.56993 * 12 11 10 40 40 H 1.09003 * 109.58911 * 294.85153 * 13 12 11 41 41 H 1.08998 * 109.58829 * 174.42593 * 13 12 11 42 42 H 0.97006 * 119.99968 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.59089 * 173.14400 * 23 14 13 44 44 H 1.09005 * 109.58342 * 293.56687 * 23 14 13 45 45 H 1.08996 * 109.56255 * 185.55796 * 24 23 14 46 46 H 1.09000 * 109.37698 * 65.51779 * 24 23 14 47 47 H 1.09004 * 117.49736 * 214.97460 * 25 10 9 48 48 H 1.08998 * 117.49858 * 359.97438 * 25 10 9 49 49 H 1.08995 * 117.49829 * 252.51509 * 26 25 10 50 50 H 1.08994 * 117.51853 * 107.48022 * 26 25 10 51 51 H 1.08001 * 119.99658 * 179.72390 * 27 5 4 52 52 H 1.08007 * 119.99709 * 180.25234 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2716 -0.0001 0.0020 6 6 5.7787 -0.0001 0.0020 7 6 6.2809 0.0016 1.4229 8 8 5.4927 0.0022 2.3447 9 7 7.6060 0.0014 1.6692 10 6 8.0942 0.0024 3.0504 11 6 9.6156 0.0027 3.2126 12 6 10.2488 0.8155 2.0810 13 6 11.7693 0.8425 2.2660 14 7 12.2585 -0.5395 2.3630 15 6 13.2591 -0.9848 1.5410 16 1 13.3915 -0.5442 0.5639 17 6 14.1033 -2.0024 1.9636 18 7 14.1706 -2.3139 3.2407 19 14 15.1437 -2.9298 0.7200 20 1 16.0480 -1.9793 0.0242 21 1 15.9519 -3.9599 1.4208 22 1 14.2580 -3.5880 -0.2738 23 6 11.6493 -1.4366 3.3545 24 6 10.1340 -1.4363 3.1611 25 6 7.2732 0.7683 4.0899 26 6 7.2727 -0.7616 4.0908 27 6 3.5804 -1.1972 -0.0028 28 6 2.1981 -1.1971 0.0010 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1421 0.8893 -0.5128 35 1 6.1420 -0.8907 -0.5107 36 1 8.2364 0.0005 0.9320 37 1 9.8784 0.4492 4.1715 38 1 9.8614 1.8341 2.1040 39 1 10.0070 0.3553 1.1230 40 1 12.0168 1.3826 3.1799 41 1 12.2327 1.3350 1.4112 42 1 14.7608 -3.0248 3.5361 43 1 12.0337 -2.4474 3.2176 44 1 11.8868 -1.0860 4.3589 45 1 9.6650 -2.0205 3.9528 46 1 9.8928 -1.8755 2.1931 47 1 7.8170 1.2720 4.8891 48 1 6.3698 1.2719 3.7460 49 1 6.3689 -1.2648 3.7476 50 1 7.8162 -1.2649 4.8904 51 1 4.1204 -2.1325 -0.0062 52 1 1.6581 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284841899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:24 Heat of formation + Delta-G solvation = 11.595398 kcal Electronic energy + Delta-G solvation = -29858.948857 eV Core-core repulsion = 26016.486854 eV Total energy + Delta-G solvation = -3842.462003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.63879 -40.29193 -39.24460 -37.41757 -34.81236 -34.51378 -33.91598 -32.08390 -31.79126 -31.44441 -30.40767 -27.41143 -26.37600 -24.43044 -24.06585 -23.61272 -22.99687 -22.48190 -21.35327 -21.17912 -20.16936 -18.77329 -18.34511 -17.15931 -16.84549 -16.69744 -16.47036 -15.93009 -15.73400 -15.60207 -15.34437 -15.18805 -14.96891 -14.72995 -14.55636 -14.44366 -14.30374 -14.27445 -13.89033 -13.62897 -13.36689 -13.09152 -12.93839 -12.76926 -12.72394 -12.65397 -12.52933 -12.31643 -12.08207 -12.00517 -11.91613 -11.90255 -11.79052 -11.70502 -11.52843 -11.11050 -10.92997 -10.60262 -10.49917 -9.78875 -9.52188 -9.37243 -8.64199 -7.84554 -5.29723 0.40900 0.54057 1.48364 1.50488 1.56917 1.63230 2.15770 2.53337 2.89854 2.98335 3.29706 3.60941 3.67855 3.73716 3.78340 3.91818 4.03555 4.04636 4.10544 4.16221 4.29016 4.30741 4.38421 4.49325 4.57640 4.58604 4.64015 4.64973 4.69314 4.77609 4.82309 4.83934 4.87380 4.95754 4.99168 5.06194 5.06522 5.19596 5.21558 5.26922 5.27604 5.30624 5.35590 5.39865 5.52008 5.54472 5.65649 5.69713 5.70101 5.72665 5.79821 6.15623 6.42268 6.61758 7.18139 7.30568 7.90297 8.41716 9.21574 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.002204 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.002544 B =12701.329625 C =13278.860865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.082 4.082 6 C -0.098 4.098 7 C 0.512 3.488 8 O -0.562 6.562 9 N -0.687 5.687 10 C 0.116 3.884 11 C -0.032 4.032 12 C -0.112 4.112 13 C 0.140 3.860 14 N -0.609 5.609 15 C -0.259 4.259 16 H 0.069 0.931 17 C -0.053 4.053 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.278 1.278 23 C 0.177 3.823 24 C -0.116 4.116 25 C -0.171 4.171 26 C -0.180 4.180 27 C -0.118 4.118 28 C -0.133 4.133 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.057 0.943 42 H 0.248 0.752 43 H 0.050 0.950 44 H -0.007 1.007 45 H 0.060 0.940 46 H 0.051 0.949 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.124 0.876 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.271 6.534 -7.718 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.082 4.082 6 C -0.137 4.137 7 C 0.300 3.700 8 O -0.441 6.441 9 N -0.338 5.338 10 C 0.028 3.972 11 C -0.051 4.051 12 C -0.151 4.151 13 C 0.014 3.986 14 N -0.332 5.332 15 C -0.389 4.389 16 H 0.087 0.913 17 C -0.249 4.249 18 N -0.582 5.582 19 Si 0.793 3.207 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.204 1.204 23 C 0.052 3.948 24 C -0.155 4.155 25 C -0.209 4.209 26 C -0.218 4.218 27 C -0.136 4.136 28 C -0.151 4.151 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.252 0.748 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.030 0.970 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.109 0.891 50 H 0.114 0.886 51 H 0.142 0.858 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.707 6.432 -7.029 26.481 hybrid contribution 1.332 -0.806 -0.349 1.596 sum -23.375 5.626 -7.377 25.149 Atomic orbital electron populations 1.20822 0.89579 1.03378 1.03064 1.20269 0.97465 0.93113 0.99157 1.21259 0.94175 0.98378 1.01136 1.21205 0.94782 0.97773 0.99519 1.19431 0.94255 0.93738 1.00802 1.20728 0.92601 1.07359 0.93045 1.21026 0.81662 0.75180 0.92143 1.90670 1.56264 1.50199 1.46959 1.45424 1.06996 1.74079 1.07324 1.20650 0.91564 1.05288 0.79711 1.20608 0.88473 0.96188 0.99869 1.21874 0.95597 0.99839 0.97790 1.21067 0.93465 0.85661 0.98371 1.44290 1.39973 1.07287 1.41675 1.19486 1.06611 1.17163 0.95658 0.91343 1.25803 0.99216 1.02842 0.96996 1.70185 1.41061 1.32505 1.14478 0.85378 0.78464 0.78256 0.78574 1.20093 1.22430 1.20358 1.20478 0.89707 0.94953 0.89709 1.21920 0.96568 0.96072 1.00910 1.23373 1.02128 0.94683 1.00761 1.23263 1.02069 0.95216 1.01283 1.21199 0.94851 0.97816 0.99758 1.21243 0.94136 0.98433 1.01276 0.90149 0.91074 0.90905 0.84580 0.85273 0.85591 0.86185 0.74762 0.90686 0.90110 0.91642 0.97046 0.92434 0.94274 0.93116 0.98884 0.92122 0.93020 0.88073 0.88790 0.89121 0.88644 0.85765 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.77 5.88 -19.87 -0.12 -1.89 16 3 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 5 C -0.08 -1.65 4.37 -19.86 -0.09 -1.74 16 6 C -0.10 -1.64 5.83 29.10 0.17 -1.47 16 7 C 0.51 12.06 7.53 87.66 0.66 12.72 16 8 O -0.56 -17.17 11.51 -3.04 -0.04 -17.21 16 9 N -0.69 -15.79 5.39 -422.91 -2.28 -18.07 16 10 C 0.12 3.09 2.48 3.61 0.01 3.10 16 11 C -0.03 -0.96 2.28 -10.77 -0.02 -0.99 16 12 C -0.11 -3.26 4.83 30.67 0.15 -3.11 16 13 C 0.14 5.38 6.52 86.36 0.56 5.95 16 14 N -0.61 -29.35 3.00 -699.92 -2.10 -31.45 16 15 C -0.26 -13.82 9.58 84.03 0.81 -13.01 16 16 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 17 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 18 N -0.94 -55.12 11.20 21.65 0.24 -54.88 16 19 Si 0.96 44.21 29.59 68.60 2.03 46.24 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.18 8.35 5.27 86.22 0.45 8.81 16 24 C -0.12 -4.15 5.20 30.53 0.16 -4.00 16 25 C -0.17 -4.60 9.36 30.60 0.29 -4.32 16 26 C -0.18 -5.11 8.91 30.60 0.27 -4.84 16 27 C -0.12 -2.41 9.70 22.27 0.22 -2.19 16 28 C -0.13 -2.50 9.70 22.27 0.22 -2.29 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.13 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.12 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.41 8.16 6.66 -92.71 -0.62 7.54 16 37 H 0.07 2.33 7.90 -2.39 -0.02 2.32 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.07 1.80 6.50 -2.39 -0.02 1.78 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 42 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 43 H 0.05 2.75 6.07 -2.39 -0.01 2.73 16 44 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 45 H 0.06 2.05 7.24 -2.39 -0.02 2.03 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 48 H 0.09 2.78 6.38 -2.39 -0.02 2.76 16 49 H 0.09 2.87 6.37 -2.39 -0.02 2.85 16 50 H 0.10 2.62 7.59 -2.39 -0.02 2.60 16 51 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 52 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -68.13 405.96 3.44 -64.69 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.29 Total: 27.23 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.29 Total: -16.56 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -4.13 Total: -104.40 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.04 Total: -17.21 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -68.13 3.44 -64.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284841899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.282 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds