Wall clock time and date at job start Wed Apr 1 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 115.54597 * 2 1 4 4 C 1.38233 * 120.00399 * 79.56691 * 3 2 1 5 5 C 1.38232 * 120.00469 * 179.76518 * 4 3 2 6 6 C 1.38231 * 119.99671 * 0.48426 * 5 4 3 7 7 C 1.38242 * 120.00266 * 359.79311 * 6 5 4 8 8 C 1.38229 * 119.99442 * 359.94939 * 7 6 5 9 9 C 1.53069 * 117.51727 * 214.27877 * 2 1 3 10 10 C 1.52994 * 117.49956 * 145.66604 * 2 1 3 11 11 H 1.08999 * 117.50353 * 0.02562 * 10 2 1 12 12 C 1.50703 * 117.49766 * 215.00838 * 10 2 1 13 13 O 1.21291 * 119.99622 * 271.47652 * 12 10 2 14 14 N 1.34772 * 120.00568 * 91.47734 * 12 10 2 15 15 C 1.46497 * 120.00484 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.47286 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47477 * 179.97438 * 16 15 14 18 18 H 1.08997 * 110.78025 * 303.21859 * 17 16 15 19 19 C 1.55153 * 110.72358 * 179.97438 * 17 16 15 20 20 C 1.55131 * 101.48399 * 205.97051 * 19 17 16 21 21 N 1.47416 * 104.72222 * 37.29529 * 20 19 17 22 22 C 1.36944 * 125.64567 * 155.81955 * 21 20 19 23 23 H 1.08001 * 119.99927 * 179.69223 * 22 21 20 24 24 C 1.38811 * 119.99873 * 359.68287 * 22 21 20 25 25 N 1.31618 * 120.00384 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99945 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46997 * 90.00496 * 26 24 22 28 28 H 1.48493 * 109.47344 * 210.00609 * 26 24 22 29 29 H 1.48500 * 109.47254 * 330.00812 * 26 24 22 30 30 C 1.47017 * 108.70865 * 335.55226 * 21 20 19 31 31 H 1.08993 * 109.47284 * 274.33000 * 1 2 3 32 32 H 1.09000 * 109.47085 * 34.33672 * 1 2 3 33 33 H 1.09000 * 109.46560 * 154.33198 * 1 2 3 34 34 H 1.08004 * 119.99628 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00233 * 180.25236 * 5 4 3 36 36 H 1.08004 * 120.00135 * 179.76656 * 6 5 4 37 37 H 1.07996 * 120.00251 * 179.97438 * 7 6 5 38 38 H 1.08010 * 119.99663 * 179.97438 * 8 7 6 39 39 H 1.08997 * 117.51422 * 145.04346 * 9 2 1 40 40 H 1.09001 * 117.49402 * 0.02562 * 9 2 1 41 41 H 0.97001 * 119.99699 * 359.97438 * 14 12 10 42 42 H 1.08994 * 109.47047 * 59.99455 * 15 14 12 43 43 H 1.09001 * 109.46762 * 300.00064 * 15 14 12 44 44 H 1.09007 * 109.47562 * 59.99974 * 16 15 14 45 45 H 1.09001 * 109.47232 * 299.99726 * 16 15 14 46 46 H 1.08993 * 111.00430 * 324.21192 * 19 17 16 47 47 H 1.09000 * 111.00538 * 88.02501 * 19 17 16 48 48 H 1.08999 * 110.49698 * 278.45325 * 20 19 17 49 49 H 1.09002 * 110.34167 * 156.06078 * 20 19 17 50 50 H 0.96995 * 120.00445 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.88688 * 120.70076 * 30 21 20 52 52 H 1.08993 * 109.88275 * 241.87534 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.2824 2.0769 1.1773 5 6 2.8829 3.3220 1.1782 6 6 3.3719 3.8542 -0.0001 7 6 3.2643 3.1396 -1.1785 8 6 2.6686 1.8922 -1.1784 9 6 2.2373 -1.1217 -0.7646 10 6 2.2365 -1.1206 0.7654 11 1 1.6113 -1.8582 1.2687 12 6 3.5290 -0.7803 1.4617 13 8 4.5814 -0.8732 0.8659 14 7 3.5155 -0.3727 2.7462 15 6 4.7719 -0.0413 3.4228 16 6 4.4784 0.3888 4.8614 17 6 5.7906 0.7344 5.5683 18 1 6.4797 -0.1096 5.5386 19 6 5.5260 1.1758 7.0320 20 6 6.7567 2.0785 7.3096 21 7 6.9950 2.7880 6.0396 22 6 7.6368 3.9903 5.9053 23 1 7.7660 4.4270 4.9260 24 6 8.1210 4.6477 7.0279 25 7 7.9639 4.1153 8.2213 26 14 8.9971 6.2873 6.8446 27 1 8.0066 7.3902 6.9322 28 1 10.0008 6.4362 7.9288 29 1 9.6802 6.3391 5.5271 30 6 6.4354 1.9880 4.9403 31 1 -0.3633 0.0776 1.0247 32 1 -0.3633 0.8486 -0.5797 33 1 -0.3632 -0.9263 -0.4452 34 1 1.8964 1.6629 2.0971 35 1 2.9666 3.8805 2.0988 36 1 3.8377 4.8287 -0.0001 37 1 3.6460 3.5556 -2.0992 38 1 2.5842 1.3340 -2.0992 39 1 3.1726 -0.8763 -1.2676 40 1 1.6122 -1.8594 -1.2679 41 1 2.6738 -0.2980 3.2225 42 1 5.2659 0.7733 2.8932 43 1 5.4219 -0.9162 3.4310 44 1 3.9846 -0.4261 5.3908 45 1 3.8282 1.2637 4.8536 46 1 4.5974 1.7413 7.1077 47 1 5.5137 0.3168 7.7030 48 1 7.6231 1.4721 7.5738 49 1 6.5334 2.7894 8.1052 50 1 8.3026 4.5745 9.0056 51 1 5.6800 2.5663 4.4082 52 1 7.2298 1.6925 4.2552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317795817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:24 Heat of formation + Delta-G solvation = 27.133903 kcal Electronic energy + Delta-G solvation = -30052.716183 eV Core-core repulsion = 26210.927980 eV Total energy + Delta-G solvation = -3841.788203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.68520 -39.00450 -37.86484 -37.00631 -35.11992 -32.99421 -31.01458 -30.95165 -30.69221 -29.13446 -28.79853 -26.72217 -25.05169 -23.85097 -23.31124 -22.50468 -22.01710 -20.52502 -20.07074 -19.71810 -19.15894 -17.66585 -16.87343 -16.53665 -15.84917 -15.77292 -15.24402 -15.05764 -14.92187 -14.63672 -14.39402 -14.18052 -13.66649 -13.54504 -13.39831 -13.27229 -13.07195 -12.88466 -12.50483 -12.40786 -12.23702 -12.06347 -11.89556 -11.67325 -11.56223 -11.26415 -11.22370 -11.03282 -10.89388 -10.73167 -10.67417 -10.33795 -10.12856 -10.04883 -9.93294 -9.77359 -9.69220 -9.41947 -9.05158 -8.94840 -8.82471 -8.61687 -6.78254 -5.61549 -3.02914 1.24208 1.33830 2.48571 3.04954 3.41724 3.42796 3.46836 3.48996 3.68373 4.23909 4.35967 4.48849 4.52329 4.69176 4.87187 4.89678 4.94255 5.01563 5.06752 5.14083 5.29064 5.32235 5.33827 5.36351 5.45516 5.51240 5.53942 5.56473 5.63696 5.67124 5.73436 5.82056 5.82779 5.93385 5.94281 5.95420 6.04874 6.22992 6.26754 6.39676 6.41802 6.45767 6.47185 6.48090 6.63575 6.67315 6.80871 6.91195 7.02094 7.47870 7.56236 7.67250 7.89490 8.22702 8.40848 9.26547 9.87689 10.53199 11.42226 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.002719 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.317961 B =10294.882209 C =11691.866016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.058 4.058 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.107 4.107 9 C -0.135 4.135 10 C -0.179 4.179 11 H 0.128 0.872 12 C 0.544 3.456 13 O -0.536 6.536 14 N -0.723 5.723 15 C 0.119 3.881 16 C -0.114 4.114 17 C -0.098 4.098 18 H 0.071 0.929 19 C -0.138 4.138 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.219 4.219 23 H 0.076 0.924 24 C -0.013 4.013 25 N -0.924 5.924 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.141 3.859 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.398 0.602 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.010 0.990 49 H 0.106 0.894 50 H 0.251 0.749 51 H 0.022 0.978 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.474 -9.990 -15.698 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.139 4.139 8 C -0.125 4.125 9 C -0.172 4.172 10 C -0.200 4.200 11 H 0.146 0.854 12 C 0.330 3.670 13 O -0.412 6.412 14 N -0.374 5.374 15 C -0.004 4.004 16 C -0.153 4.153 17 C -0.117 4.117 18 H 0.090 0.910 19 C -0.177 4.177 20 C 0.026 3.974 21 N -0.331 5.331 22 C -0.348 4.348 23 H 0.094 0.906 24 C -0.208 4.208 25 N -0.573 5.573 26 Si 0.744 3.256 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.015 3.985 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.028 0.972 49 H 0.124 0.876 50 H 0.062 0.938 51 H 0.040 0.960 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.567 -9.891 -15.997 25.736 hybrid contribution 0.238 0.775 0.266 0.853 sum -17.329 -9.116 -15.731 25.117 Atomic orbital electron populations 1.21361 0.90471 1.02497 1.02485 1.20231 0.94622 0.87908 1.03896 1.18936 0.99229 0.93810 0.93817 1.20905 0.99265 0.94677 0.97207 1.21196 0.97829 0.95735 0.98396 1.21214 0.99394 1.00113 0.92808 1.21119 0.99547 0.94944 0.98273 1.20921 0.98396 0.95678 0.97504 1.23201 1.02773 0.99470 0.91756 1.22462 0.97922 1.03333 0.96284 0.85418 1.19501 0.89528 0.76435 0.81572 1.90711 1.32580 1.52542 1.65399 1.45985 1.10474 1.68435 1.12536 1.21475 0.85374 1.00833 0.92718 1.21769 0.98735 1.01253 0.93508 1.22096 0.95010 0.98226 0.96411 0.91035 1.23072 1.01036 0.99426 0.94161 1.21973 0.91072 0.93358 0.90994 1.44525 1.66721 1.20430 1.01430 1.19093 1.28104 0.94249 0.93343 0.90592 1.24776 1.01538 0.99171 0.95335 1.69795 1.51478 1.38661 0.97333 0.86087 0.79041 0.83491 0.77009 1.21633 1.21673 1.20747 1.21345 0.95092 0.90476 0.91569 0.91723 0.91499 0.91802 0.86437 0.85722 0.86017 0.86130 0.86233 0.87417 0.87646 0.76869 0.91030 0.91688 0.91738 0.91263 0.92219 0.92573 0.97193 0.87648 0.93812 0.95975 0.96396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.84 37.16 0.37 -0.31 16 2 C -0.07 -0.55 2.19 -155.62 -0.34 -0.89 16 3 C -0.06 -0.62 4.28 -104.62 -0.45 -1.06 16 4 C -0.10 -1.14 8.63 -39.59 -0.34 -1.48 16 5 C -0.11 -1.34 10.05 -39.59 -0.40 -1.74 16 6 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 7 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 8 C -0.11 -1.14 9.31 -39.59 -0.37 -1.51 16 9 C -0.13 -1.15 9.00 -26.70 -0.24 -1.39 16 10 C -0.18 -1.62 5.90 -91.77 -0.54 -2.16 16 11 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 12 C 0.54 6.89 5.97 -10.99 -0.07 6.83 16 13 O -0.54 -9.21 16.45 5.55 0.09 -9.11 16 14 N -0.72 -7.97 4.98 -60.30 -0.30 -8.27 16 15 C 0.12 1.58 5.52 -4.05 -0.02 1.56 16 16 C -0.11 -1.48 4.71 -26.73 -0.13 -1.60 16 17 C -0.10 -1.67 2.98 -88.78 -0.26 -1.93 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.14 -2.57 6.54 -24.46 -0.16 -2.73 16 20 C 0.15 3.71 5.91 -2.41 -0.01 3.69 16 21 N -0.61 -15.83 3.39 -169.94 -0.58 -16.41 16 22 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 23 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 24 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 25 N -0.92 -27.28 10.08 55.49 0.56 -26.72 16 26 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 30 C 0.14 3.00 5.99 -3.06 -0.02 2.98 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 34 H 0.12 1.14 7.76 -52.48 -0.41 0.73 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.08 7.92 -52.48 -0.42 0.66 16 39 H 0.11 1.14 7.66 -51.93 -0.40 0.75 16 40 H 0.11 0.64 8.05 -51.93 -0.42 0.23 16 41 H 0.40 3.25 8.44 -40.82 -0.34 2.91 16 42 H 0.07 1.13 7.49 -51.93 -0.39 0.74 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 46 H 0.06 1.08 8.05 -51.93 -0.42 0.67 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.11 2.90 5.86 -51.93 -0.30 2.60 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 51 H 0.02 0.47 7.76 -51.93 -0.40 0.06 16 52 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 416.93 15.07 6.28 6.28 Total: -1.00 -33.89 416.93 -11.94 -45.83 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.94 Total: 3.08 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.03 Total: -12.07 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.32 Total: -51.40 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.89 -11.94 -45.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317795817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.965 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds