Wall clock time and date at job start Wed Apr 1 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.65475 * 2 1 4 4 N 1.46505 * 109.47193 * 298.25750 * 3 2 1 5 5 C 1.36932 * 120.00372 * 179.97438 * 4 3 2 6 6 H 1.08009 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.38806 * 120.00236 * 180.02562 * 5 4 3 8 8 N 1.31623 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47251 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47054 * 120.00142 * 9 7 5 12 12 H 1.48497 * 109.47482 * 240.00209 * 9 7 5 13 13 C 1.54617 * 110.74121 * 236.80874 * 2 1 3 14 14 C 1.54011 * 105.04050 * 263.32838 * 13 2 1 15 15 N 1.47481 * 107.08484 * 1.30566 * 14 13 2 16 16 C 1.34779 * 127.03502 * 154.51797 * 15 14 13 17 17 O 1.21273 * 119.99814 * 178.21525 * 16 15 14 18 18 C 1.50701 * 119.99403 * 358.48954 * 16 15 14 19 19 C 1.52995 * 115.54909 * 266.40313 * 18 16 15 20 20 C 1.50704 * 109.47399 * 293.98838 * 19 18 16 21 21 C 1.38234 * 120.00097 * 278.49982 * 20 19 18 22 22 C 1.38235 * 119.99869 * 179.78833 * 21 20 19 23 23 C 1.38242 * 119.99955 * 0.43719 * 22 21 20 24 24 C 1.38229 * 119.99935 * 359.81296 * 23 22 21 25 25 C 1.38236 * 119.99834 * 98.76963 * 20 19 18 26 26 C 1.53001 * 117.49598 * 120.70020 * 18 16 15 27 27 C 1.53000 * 117.49892 * 52.07683 * 18 16 15 28 28 C 1.48119 * 105.93162 * 334.77896 * 15 14 13 29 29 H 1.09004 * 109.46617 * 189.06498 * 1 2 3 30 30 H 1.08997 * 109.47167 * 309.06439 * 1 2 3 31 31 H 1.08999 * 109.47128 * 69.06687 * 1 2 3 32 32 H 1.08996 * 109.47881 * 58.26011 * 3 2 1 33 33 H 1.09007 * 109.47356 * 178.26437 * 3 2 1 34 34 H 0.97003 * 119.99607 * 0.02562 * 4 3 2 35 35 H 0.96994 * 119.99884 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.32537 * 144.43714 * 13 2 1 37 37 H 1.08992 * 110.41469 * 22.26164 * 13 2 1 38 38 H 1.08995 * 109.90999 * 241.94318 * 14 13 2 39 39 H 1.08995 * 109.90729 * 120.66952 * 14 13 2 40 40 H 1.08994 * 109.47359 * 53.99442 * 19 18 16 41 41 H 1.09003 * 109.47087 * 173.99297 * 19 18 16 42 42 H 1.07994 * 120.00373 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00254 * 180.27618 * 22 21 20 44 44 H 1.07995 * 119.99801 * 179.83795 * 23 22 21 45 45 H 1.07999 * 120.00343 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00256 * 359.97438 * 25 20 19 47 47 H 1.09002 * 117.49824 * 359.97438 * 26 18 16 48 48 H 1.09001 * 117.49828 * 145.01736 * 26 18 16 49 49 H 1.09001 * 117.49470 * 214.97037 * 27 18 16 50 50 H 1.08994 * 117.49839 * 359.97438 * 27 18 16 51 51 H 1.08998 * 110.66233 * 157.51042 * 28 15 14 52 52 H 1.08998 * 110.66005 * 280.62379 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.6300 2.1193 -1.2166 5 6 1.9936 3.4210 -1.4369 6 1 2.6048 3.9407 -0.7138 7 6 1.5766 4.0726 -2.5893 8 7 0.8313 3.4395 -3.4703 9 14 2.0720 5.8486 -2.8894 10 1 2.9038 6.3286 -1.7567 11 1 2.8528 5.9385 -4.1494 12 1 0.8537 6.6903 -3.0009 13 6 2.0776 -0.7916 -1.2101 14 6 2.3807 -2.1989 -0.6629 15 7 1.9939 -2.2031 0.7603 16 6 1.6327 -3.2702 1.5002 17 8 1.3688 -3.1316 2.6757 18 6 1.5629 -4.6364 0.8681 19 6 0.1879 -5.0493 0.3391 20 6 -0.7703 -5.1982 1.4927 21 6 -0.7785 -6.3620 2.2386 22 6 -1.6544 -6.4969 3.2995 23 6 -2.5283 -5.4714 3.6089 24 6 -2.5236 -4.3096 2.8599 25 6 -1.6447 -4.1731 1.8016 26 6 2.4524 -5.7334 1.4567 27 6 2.7916 -5.1213 0.0961 28 6 2.0773 -0.7938 1.2084 29 1 -0.3633 -1.0149 0.1619 30 1 -0.3633 0.6476 0.7979 31 1 -0.3633 0.3672 -0.9598 32 1 1.6920 1.9624 0.8739 33 1 3.1591 1.4094 0.0311 34 1 1.0807 1.6527 -1.8659 35 1 0.5396 3.8950 -4.2754 36 1 2.9892 -0.3267 -1.5854 37 1 1.3281 -0.8456 -1.9996 38 1 3.4451 -2.4132 -0.7590 39 1 1.7990 -2.9423 -1.2080 40 1 -0.1826 -4.2857 -0.3447 41 1 0.2719 -5.9995 -0.1884 42 1 -0.0987 -7.1648 1.9943 43 1 -1.6579 -7.4044 3.8850 44 1 -3.2144 -5.5778 4.4361 45 1 -3.2060 -3.5083 3.1018 46 1 -1.6410 -3.2653 1.2165 47 1 3.0883 -5.4667 2.3008 48 1 2.0580 -6.7495 1.4673 49 1 2.6204 -5.7348 -0.7884 50 1 3.6503 -4.4519 0.0450 51 1 1.4539 -0.6323 2.0878 52 1 3.1112 -0.5157 1.4123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324742995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:36 Heat of formation + Delta-G solvation = 24.226874 kcal Electronic energy + Delta-G solvation = -30529.008772 eV Core-core repulsion = 26687.094511 eV Total energy + Delta-G solvation = -3841.914261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.66414 -39.32530 -38.26502 -36.72736 -34.77980 -32.62472 -32.43019 -30.95771 -30.21543 -29.46069 -27.63155 -26.80586 -25.61394 -23.72709 -22.99555 -22.56450 -22.29723 -22.09208 -21.24060 -19.09215 -18.34600 -17.21963 -17.01055 -16.48799 -16.06479 -15.76962 -15.32987 -15.08900 -14.96609 -14.57116 -14.09956 -14.03294 -13.62876 -13.52812 -13.45537 -13.35107 -13.10369 -12.73546 -12.67587 -12.56819 -12.38096 -12.19673 -12.07532 -11.80537 -11.62172 -11.51036 -11.22935 -11.12458 -11.03413 -10.83607 -10.75375 -10.54342 -10.33982 -10.31400 -10.21631 -9.92910 -9.70565 -9.61353 -8.96741 -8.89190 -8.78130 -8.57299 -6.92485 -5.78157 -3.06032 1.27271 1.35415 2.63586 2.90480 3.39753 3.42302 3.48544 3.50307 3.71979 4.29207 4.39798 4.50403 4.57514 4.64561 4.79464 4.81060 4.81340 4.92079 4.95973 5.02848 5.11504 5.27381 5.31420 5.34430 5.39625 5.43866 5.46865 5.52993 5.56952 5.59282 5.61839 5.63943 5.79567 5.82243 5.91648 5.94436 5.96306 5.97027 6.02498 6.17741 6.25709 6.31393 6.37605 6.44627 6.45189 6.53160 6.56491 6.62695 6.76826 6.84509 6.93795 7.61568 7.69896 8.22058 8.41114 9.52848 10.10327 10.45598 11.44842 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.002498 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.203548 B =11206.796173 C =11951.629180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.120 4.120 14 C 0.103 3.897 15 N -0.613 5.613 16 C 0.568 3.432 17 O -0.532 6.532 18 C -0.141 4.141 19 C -0.035 4.035 20 C -0.075 4.075 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.102 4.102 26 C -0.144 4.144 27 C -0.165 4.165 28 C 0.116 3.884 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 -23.393 8.598 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.079 4.079 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.158 4.158 14 C -0.020 4.020 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.408 6.408 18 C -0.144 4.144 19 C -0.073 4.073 20 C -0.075 4.075 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.182 4.182 27 C -0.202 4.202 28 C -0.007 4.007 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.116 0.884 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.119 0.881 51 H 0.100 0.900 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.018 -23.238 9.318 25.058 hybrid contribution 0.104 0.996 -0.482 1.111 sum -0.914 -22.242 8.836 23.951 Atomic orbital electron populations 1.21677 0.93585 1.00208 1.02855 1.21775 0.96430 0.95995 0.93724 1.20604 0.96035 0.88286 0.91043 1.42318 1.62581 1.11703 1.20652 1.19269 1.25947 0.88505 1.03065 0.91198 1.24714 1.00666 0.98307 0.97307 1.69661 1.40660 1.36342 1.11584 0.86135 0.77610 0.84963 0.77594 1.20598 1.21925 1.21920 1.22575 1.02799 0.92730 0.97743 1.22214 0.99637 0.99074 0.81096 1.48760 1.66628 1.07346 1.11898 1.19023 0.76245 0.83619 0.85575 1.90708 1.49230 1.85158 1.15679 1.21287 0.93579 0.93685 1.05891 1.20034 0.89869 1.02338 0.95034 1.19656 0.96291 0.94347 0.97177 1.20912 0.98798 0.97299 0.95839 1.21066 0.96428 0.98928 0.97588 1.21101 0.99375 0.94029 0.99710 1.21112 0.99041 0.97641 0.95595 1.21019 0.95417 0.98012 0.97569 1.22986 1.01180 0.96926 0.97088 1.23232 0.97596 1.03383 0.96014 1.22452 1.01135 0.79246 0.97843 0.93866 0.92718 0.91491 0.96124 0.96140 0.78103 0.93610 0.89750 0.90329 0.91763 0.90965 0.90160 0.89793 0.86505 0.86392 0.86421 0.86249 0.86521 0.88389 0.87942 0.87720 0.88122 0.90013 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.25 37.16 0.31 -1.69 16 2 C -0.08 -1.20 0.64 -152.82 -0.10 -1.30 16 3 C 0.17 3.24 5.08 -4.04 -0.02 3.22 16 4 N -0.73 -17.56 5.18 -59.90 -0.31 -17.87 16 5 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 9 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C -0.12 -1.68 5.52 -25.35 -0.14 -1.82 16 14 C 0.10 1.16 5.59 -2.98 -0.02 1.14 16 15 N -0.61 -8.01 3.16 -169.98 -0.54 -8.55 16 16 C 0.57 7.85 6.75 -10.98 -0.07 7.77 16 17 O -0.53 -9.36 17.30 5.56 0.10 -9.27 16 18 C -0.14 -1.45 1.23 -155.66 -0.19 -1.64 16 19 C -0.04 -0.33 5.23 -27.88 -0.15 -0.48 16 20 C -0.07 -0.83 4.83 -104.62 -0.50 -1.33 16 21 C -0.11 -1.11 9.64 -39.58 -0.38 -1.50 16 22 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 23 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 25 C -0.10 -1.24 9.67 -39.58 -0.38 -1.62 16 26 C -0.14 -1.27 9.87 -26.73 -0.26 -1.53 16 27 C -0.17 -1.29 8.57 -26.73 -0.23 -1.52 16 28 C 0.12 1.66 5.95 -2.31 -0.01 1.64 16 29 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.17 7.27 -51.93 -0.38 0.79 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.40 8.12 -51.92 -0.42 -0.02 16 34 H 0.38 9.67 6.46 -40.82 -0.26 9.40 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 37 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 38 H 0.06 0.65 7.61 -51.93 -0.40 0.25 16 39 H 0.07 0.71 7.40 -51.93 -0.38 0.33 16 40 H 0.08 0.76 8.02 -51.93 -0.42 0.35 16 41 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.12 0.93 7.52 -52.49 -0.39 0.53 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.42 8.05 -52.48 -0.42 1.00 16 47 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.10 0.71 7.61 -51.93 -0.40 0.32 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.10 0.82 7.21 -51.93 -0.37 0.44 16 51 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 52 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 417.70 15.07 6.29 6.29 Total: -1.00 -32.38 417.70 -11.17 -43.55 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.82 Total: 8.30 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.59 Total: -12.75 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.12 Total: -53.27 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.10 Total: -9.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.38 -11.17 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.778 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds