Wall clock time and date at job start Wed Apr 1 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 110.65475 * 2 1 4 4 N 1.46505 * 109.47193 * 298.25750 * 3 2 1 5 5 C 1.36932 * 120.00372 * 179.97438 * 4 3 2 6 6 H 1.08009 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.38806 * 120.00236 * 180.02562 * 5 4 3 8 8 N 1.31623 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47251 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47054 * 120.00142 * 9 7 5 12 12 H 1.48497 * 109.47482 * 240.00209 * 9 7 5 13 13 C 1.54617 * 110.74121 * 236.80874 * 2 1 3 14 14 C 1.54011 * 105.04050 * 263.32838 * 13 2 1 15 15 N 1.47481 * 107.08484 * 1.30566 * 14 13 2 16 16 C 1.34779 * 127.03502 * 154.51797 * 15 14 13 17 17 O 1.21273 * 119.99814 * 178.21525 * 16 15 14 18 18 C 1.50701 * 119.99403 * 358.48954 * 16 15 14 19 19 C 1.52995 * 115.54909 * 266.40313 * 18 16 15 20 20 C 1.50704 * 109.47399 * 293.98838 * 19 18 16 21 21 C 1.38234 * 120.00097 * 278.49982 * 20 19 18 22 22 C 1.38235 * 119.99869 * 179.78833 * 21 20 19 23 23 C 1.38242 * 119.99955 * 0.43719 * 22 21 20 24 24 C 1.38229 * 119.99935 * 359.81296 * 23 22 21 25 25 C 1.38236 * 119.99834 * 98.76963 * 20 19 18 26 26 C 1.53001 * 117.49598 * 120.70020 * 18 16 15 27 27 C 1.53000 * 117.49892 * 52.07683 * 18 16 15 28 28 C 1.48119 * 105.93162 * 334.77896 * 15 14 13 29 29 H 1.09004 * 109.46617 * 189.06498 * 1 2 3 30 30 H 1.08997 * 109.47167 * 309.06439 * 1 2 3 31 31 H 1.08999 * 109.47128 * 69.06687 * 1 2 3 32 32 H 1.08996 * 109.47881 * 58.26011 * 3 2 1 33 33 H 1.09007 * 109.47356 * 178.26437 * 3 2 1 34 34 H 0.97003 * 119.99607 * 0.02562 * 4 3 2 35 35 H 0.96994 * 119.99884 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.32537 * 144.43714 * 13 2 1 37 37 H 1.08992 * 110.41469 * 22.26164 * 13 2 1 38 38 H 1.08995 * 109.90999 * 241.94318 * 14 13 2 39 39 H 1.08995 * 109.90729 * 120.66952 * 14 13 2 40 40 H 1.08994 * 109.47359 * 53.99442 * 19 18 16 41 41 H 1.09003 * 109.47087 * 173.99297 * 19 18 16 42 42 H 1.07994 * 120.00373 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.00254 * 180.27618 * 22 21 20 44 44 H 1.07995 * 119.99801 * 179.83795 * 23 22 21 45 45 H 1.07999 * 120.00343 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00256 * 359.97438 * 25 20 19 47 47 H 1.09002 * 117.49824 * 359.97438 * 26 18 16 48 48 H 1.09001 * 117.49828 * 145.01736 * 26 18 16 49 49 H 1.09001 * 117.49470 * 214.97037 * 27 18 16 50 50 H 1.08994 * 117.49839 * 359.97438 * 27 18 16 51 51 H 1.08998 * 110.66233 * 157.51042 * 28 15 14 52 52 H 1.08998 * 110.66005 * 280.62379 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4317 0.0000 4 7 1.6300 2.1193 -1.2166 5 6 1.9936 3.4210 -1.4369 6 1 2.6048 3.9407 -0.7138 7 6 1.5766 4.0726 -2.5893 8 7 0.8313 3.4395 -3.4703 9 14 2.0720 5.8486 -2.8894 10 1 2.9038 6.3286 -1.7567 11 1 2.8528 5.9385 -4.1494 12 1 0.8537 6.6903 -3.0009 13 6 2.0776 -0.7916 -1.2101 14 6 2.3807 -2.1989 -0.6629 15 7 1.9939 -2.2031 0.7603 16 6 1.6327 -3.2702 1.5002 17 8 1.3688 -3.1316 2.6757 18 6 1.5629 -4.6364 0.8681 19 6 0.1879 -5.0493 0.3391 20 6 -0.7703 -5.1982 1.4927 21 6 -0.7785 -6.3620 2.2386 22 6 -1.6544 -6.4969 3.2995 23 6 -2.5283 -5.4714 3.6089 24 6 -2.5236 -4.3096 2.8599 25 6 -1.6447 -4.1731 1.8016 26 6 2.4524 -5.7334 1.4567 27 6 2.7916 -5.1213 0.0961 28 6 2.0773 -0.7938 1.2084 29 1 -0.3633 -1.0149 0.1619 30 1 -0.3633 0.6476 0.7979 31 1 -0.3633 0.3672 -0.9598 32 1 1.6920 1.9624 0.8739 33 1 3.1591 1.4094 0.0311 34 1 1.0807 1.6527 -1.8659 35 1 0.5396 3.8950 -4.2754 36 1 2.9892 -0.3267 -1.5854 37 1 1.3281 -0.8456 -1.9996 38 1 3.4451 -2.4132 -0.7590 39 1 1.7990 -2.9423 -1.2080 40 1 -0.1826 -4.2857 -0.3447 41 1 0.2719 -5.9995 -0.1884 42 1 -0.0987 -7.1648 1.9943 43 1 -1.6579 -7.4044 3.8850 44 1 -3.2144 -5.5778 4.4361 45 1 -3.2060 -3.5083 3.1018 46 1 -1.6410 -3.2653 1.2165 47 1 3.0883 -5.4667 2.3008 48 1 2.0580 -6.7495 1.4673 49 1 2.6204 -5.7348 -0.7884 50 1 3.6503 -4.4519 0.0450 51 1 1.4539 -0.6323 2.0878 52 1 3.1112 -0.5157 1.4123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324742995.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:30 Heat of formation + Delta-G solvation = 7.643580 kcal Electronic energy + Delta-G solvation = -30529.727878 eV Core-core repulsion = 26687.094511 eV Total energy + Delta-G solvation = -3842.633367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 6.01 seconds Orbital eigenvalues (eV) -41.65082 -40.23509 -39.32016 -37.64420 -36.44780 -34.23978 -33.20280 -32.01176 -31.73167 -30.62433 -28.49649 -27.95638 -27.30109 -25.05689 -24.15549 -23.59741 -23.15013 -23.01874 -22.08607 -20.31863 -19.49677 -19.09011 -17.93319 -17.36272 -17.16752 -16.75789 -16.56589 -16.14284 -15.89965 -15.80011 -15.53763 -15.12282 -15.04498 -14.95807 -14.49097 -14.26153 -14.15260 -14.09086 -13.82994 -13.66423 -13.41523 -13.17199 -13.05619 -12.99274 -12.86025 -12.84810 -12.49812 -12.39379 -12.23540 -12.08088 -12.06782 -11.87136 -11.65188 -11.56028 -11.48030 -11.39408 -10.99057 -10.93164 -10.64937 -9.77095 -9.70279 -9.52713 -8.96027 -7.93262 -5.20491 0.49105 0.55151 1.48220 1.48864 1.58435 1.60784 1.90707 2.57208 2.70179 2.94427 3.33027 3.41121 3.62599 3.65801 3.74007 3.82264 3.84503 3.96435 4.07440 4.16805 4.21194 4.23171 4.28562 4.30679 4.33392 4.37031 4.55237 4.61035 4.66267 4.70565 4.74359 4.78300 4.80021 4.84166 4.87233 4.91453 4.99270 5.02383 5.03660 5.05936 5.14385 5.19422 5.21468 5.23810 5.32143 5.35189 5.44870 5.52302 5.60261 5.65533 5.74226 6.17893 6.29418 6.58190 7.16712 7.37019 8.12196 8.37556 9.30279 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.002498 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.203548 B =11206.796173 C =11951.629180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C 0.169 3.831 4 N -0.736 5.736 5 C -0.241 4.241 6 H 0.072 0.928 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.969 3.031 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.296 1.296 13 C -0.116 4.116 14 C 0.111 3.889 15 N -0.612 5.612 16 C 0.564 3.436 17 O -0.578 6.578 18 C -0.156 4.156 19 C -0.031 4.031 20 C -0.085 4.085 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.143 4.143 28 C 0.121 3.879 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.014 0.986 33 H 0.027 0.973 34 H 0.378 0.622 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.134 0.866 50 H 0.099 0.901 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -25.811 8.339 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C 0.042 3.958 4 N -0.379 5.379 5 C -0.373 4.373 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.617 5.617 9 Si 0.799 3.201 10 H -0.193 1.193 11 H -0.220 1.220 12 H -0.223 1.223 13 C -0.154 4.154 14 C -0.012 4.012 15 N -0.344 5.344 16 C 0.354 3.646 17 O -0.457 6.457 18 C -0.159 4.159 19 C -0.068 4.068 20 C -0.085 4.085 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.181 4.181 27 C -0.180 4.180 28 C -0.002 4.002 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.140 0.860 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.144 0.856 49 H 0.152 0.848 50 H 0.117 0.883 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.302 -25.666 9.072 27.224 hybrid contribution -0.299 1.749 -0.302 1.799 sum 0.002 -23.917 8.770 25.475 Atomic orbital electron populations 1.21562 0.93999 1.00540 1.01289 1.21600 0.95913 0.94196 0.95489 1.20698 0.96246 0.90099 0.88786 1.42449 1.62429 1.11129 1.21887 1.19627 1.25055 0.89778 1.02814 0.90964 1.25468 1.01407 1.02132 0.97483 1.69801 1.42173 1.37765 1.11996 0.85139 0.77042 0.80433 0.77532 1.19340 1.21960 1.22312 1.22492 1.01926 0.94181 0.96830 1.22272 1.01387 0.97630 0.79864 1.48817 1.66356 1.06613 1.12629 1.19739 0.74900 0.84885 0.85106 1.90680 1.51154 1.86017 1.17848 1.21211 0.95069 0.91794 1.07860 1.20080 0.88765 1.03644 0.94349 1.19933 0.96243 0.94314 0.97969 1.21260 0.99064 0.97543 0.95507 1.21462 0.95805 0.99589 0.97677 1.21393 1.00022 0.93794 1.00087 1.21319 0.99469 0.98581 0.96052 1.21112 0.96894 0.98344 0.98333 1.23086 1.00313 0.97435 0.97271 1.23373 0.95592 1.02551 0.96477 1.22275 1.01127 0.80320 0.96521 0.92653 0.93738 0.93370 0.96840 0.95533 0.78919 0.94054 0.90768 0.90930 0.89513 0.88699 0.90765 0.86746 0.83913 0.83881 0.84616 0.85970 0.87902 0.90026 0.85643 0.84828 0.88263 0.91528 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.25 71.98 0.59 -3.21 16 2 C -0.07 -2.20 0.64 -51.09 -0.03 -2.23 16 3 C 0.17 6.57 5.08 86.38 0.44 7.01 16 4 N -0.74 -36.03 5.18 -343.44 -1.78 -37.81 16 5 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 6 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 8 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 9 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 13 C -0.12 -3.15 5.52 31.49 0.17 -2.98 16 14 C 0.11 2.24 5.59 86.53 0.48 2.72 16 15 N -0.61 -15.32 3.16 -810.10 -2.56 -17.88 16 16 C 0.56 15.10 6.75 87.66 0.59 15.69 16 17 O -0.58 -20.59 17.30 -3.01 -0.05 -20.64 16 18 C -0.16 -2.81 1.23 -52.93 -0.07 -2.88 16 19 C -0.03 -0.51 5.23 29.85 0.16 -0.35 16 20 C -0.08 -1.78 4.83 -19.86 -0.10 -1.87 16 21 C -0.12 -2.08 9.64 22.27 0.21 -1.87 16 22 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 23 C -0.14 -2.70 10.05 22.27 0.22 -2.48 16 24 C -0.14 -3.20 10.05 22.27 0.22 -2.97 16 25 C -0.13 -3.22 9.67 22.27 0.22 -3.00 16 26 C -0.14 -2.07 9.87 30.60 0.30 -1.77 16 27 C -0.14 -1.66 8.57 30.60 0.26 -1.40 16 28 C 0.12 3.44 5.95 86.61 0.52 3.96 16 29 H 0.05 1.65 8.00 -2.38 -0.02 1.63 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.74 7.27 -2.39 -0.02 1.73 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.03 1.02 8.12 -2.38 -0.02 1.00 16 34 H 0.38 19.44 6.46 -92.71 -0.60 18.84 16 35 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.07 2.19 7.85 -2.39 -0.02 2.17 16 37 H 0.07 2.07 7.83 -2.39 -0.02 2.05 16 38 H 0.09 1.44 7.61 -2.39 -0.02 1.42 16 39 H 0.09 1.55 7.40 -2.39 -0.02 1.53 16 40 H 0.07 1.28 8.02 -2.39 -0.02 1.26 16 41 H 0.11 1.16 8.08 -2.39 -0.02 1.14 16 42 H 0.14 1.72 7.52 -2.91 -0.02 1.70 16 43 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 46 H 0.10 2.70 8.05 -2.91 -0.02 2.68 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 48 H 0.13 1.21 7.61 -2.39 -0.02 1.19 16 49 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.10 1.22 7.21 -2.39 -0.02 1.20 16 51 H 0.07 2.11 7.77 -2.39 -0.02 2.09 16 52 H 0.08 2.16 8.03 -2.39 -0.02 2.14 16 Total: -1.00 -71.49 417.70 3.94 -67.55 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.29 Total: 34.31 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 5.73 Total: -15.70 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.06 Total: -113.33 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.05 Total: -20.64 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.49 3.94 -67.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324742995.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.189 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds