Wall clock time and date at job start Wed Apr 1 2020 02:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.54714 * 2 1 4 4 C 1.38234 * 120.00097 * 79.30164 * 3 2 1 5 5 C 1.38241 * 119.99754 * 179.76121 * 4 3 2 6 6 C 1.38234 * 120.00246 * 0.48839 * 5 4 3 7 7 C 1.38238 * 119.99429 * 359.78590 * 6 5 4 8 8 C 1.38225 * 120.00380 * 359.95946 * 7 6 5 9 9 C 1.52994 * 117.49858 * 214.28760 * 2 1 3 10 10 C 1.52998 * 60.00157 * 252.51172 * 9 2 1 11 11 H 1.09004 * 117.51867 * 107.48296 * 10 9 2 12 12 C 1.50697 * 117.50024 * 252.51004 * 10 9 2 13 13 O 1.21277 * 120.00406 * 345.63876 * 12 10 9 14 14 N 1.34775 * 119.99878 * 165.63489 * 12 10 9 15 15 C 1.48442 * 127.98339 * 0.09753 * 14 12 10 16 16 C 1.54388 * 104.65330 * 140.36253 * 15 14 12 17 17 C 1.54293 * 104.95919 * 23.87147 * 16 15 14 18 18 C 1.52997 * 110.43402 * 118.91736 * 17 16 15 19 19 C 1.53002 * 110.34118 * 241.12639 * 17 16 15 20 20 N 1.46500 * 109.47251 * 295.53818 * 19 17 16 21 21 C 1.36940 * 120.00162 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99648 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00077 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 119.99961 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47043 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47466 * 119.99557 * 25 23 21 28 28 H 1.48497 * 109.47249 * 239.99850 * 25 23 21 29 29 C 1.48147 * 127.83775 * 180.02562 * 14 12 10 30 30 H 1.08993 * 109.47131 * 274.33084 * 1 2 3 31 31 H 1.09000 * 109.46873 * 34.33371 * 1 2 3 32 32 H 1.08999 * 109.47079 * 154.32964 * 1 2 3 33 33 H 1.07994 * 120.00301 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.99631 * 180.24910 * 5 4 3 35 35 H 1.07992 * 120.00264 * 179.76469 * 6 5 4 36 36 H 1.08003 * 119.99663 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.00010 * 179.97438 * 8 7 6 38 38 H 1.09004 * 117.49890 * 145.02559 * 9 2 1 39 39 H 1.09003 * 117.50179 * 0.02562 * 9 2 1 40 40 H 1.08998 * 110.38387 * 21.56828 * 15 14 12 41 41 H 1.08999 * 110.49309 * 259.21101 * 15 14 12 42 42 H 1.08994 * 110.34558 * 265.00399 * 16 15 14 43 43 H 1.08997 * 110.43004 * 142.78335 * 16 15 14 44 44 H 1.09004 * 109.46945 * 304.40980 * 18 17 16 45 45 H 1.08998 * 109.47368 * 64.40302 * 18 17 16 46 46 H 1.08996 * 109.47364 * 184.41215 * 18 17 16 47 47 H 1.09003 * 109.47010 * 55.53641 * 19 17 16 48 48 H 1.08997 * 109.47494 * 175.53839 * 19 17 16 49 49 H 0.96996 * 120.00018 * 359.97438 * 20 19 17 50 50 H 0.96998 * 120.00270 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.40937 * 100.81179 * 29 14 12 52 52 H 1.08998 * 110.40716 * 338.48724 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 2.2775 2.0791 1.1763 5 6 2.8781 3.3242 1.1772 6 6 3.3720 3.8542 -0.0001 7 6 3.2693 3.1371 -1.1775 8 6 2.6735 1.8898 -1.1774 9 6 2.2364 -1.1213 -0.7645 10 6 2.2364 -1.1207 0.7655 11 1 1.6112 -1.8578 1.2694 12 6 3.5292 -0.7806 1.4612 13 8 4.5700 -0.7766 0.8387 14 7 3.5287 -0.4808 2.7752 15 6 2.3694 -0.4342 3.7011 16 6 2.8960 -1.0457 5.0173 17 6 4.4245 -0.8411 4.9680 18 6 4.8845 0.0321 6.1371 19 6 5.1431 -2.1915 4.9992 20 7 4.8810 -2.8548 6.2788 21 6 5.4238 -4.0854 6.5361 22 1 6.0456 -4.5668 5.7957 23 6 5.1750 -4.7142 7.7484 24 7 4.4176 -4.1273 8.6508 25 14 5.9161 -6.3924 8.0995 26 1 6.7225 -6.8314 6.9323 27 1 6.7867 -6.3079 9.2996 28 1 4.8279 -7.3725 8.3454 29 6 4.6875 -0.1235 3.6262 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 0.8486 -0.5796 32 1 -0.3633 -0.9262 -0.4452 33 1 1.8876 1.6670 2.0953 34 1 2.9579 3.8845 2.0970 35 1 3.8378 4.8285 -0.0001 36 1 3.6549 3.5513 -2.0974 37 1 2.5929 1.3298 -2.0973 38 1 3.1716 -0.8757 -1.2679 39 1 1.6112 -1.8587 -1.2679 40 1 1.5455 -1.0298 3.3082 41 1 2.0503 0.5956 3.8614 42 1 2.6573 -2.1082 5.0637 43 1 2.4715 -0.5248 5.8755 44 1 4.3366 0.9744 6.1243 45 1 4.6924 -0.4870 7.0760 46 1 5.9520 0.2313 6.0438 47 1 4.7776 -2.8165 4.1844 48 1 6.2157 -2.0351 4.8841 49 1 4.3228 -2.4224 6.9439 50 1 4.2440 -4.5665 9.4981 51 1 4.7319 0.9554 3.7745 52 1 5.6136 -0.4833 3.1779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324764556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:10 Heat of formation + Delta-G solvation = 27.071506 kcal Electronic energy + Delta-G solvation = -30753.419066 eV Core-core repulsion = 26911.628157 eV Total energy + Delta-G solvation = -3841.790909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.05 seconds Orbital eigenvalues (eV) -40.72570 -39.40654 -38.19006 -36.69990 -34.72819 -32.65220 -31.06379 -30.88010 -30.26976 -29.39425 -28.92019 -26.79074 -25.68858 -23.81587 -23.35461 -23.00715 -22.35876 -22.10423 -19.98278 -19.09903 -18.55642 -17.36291 -17.03163 -16.67979 -15.97759 -15.60886 -15.07425 -15.04056 -14.69878 -14.41698 -14.13734 -13.98008 -13.63161 -13.53166 -13.37261 -13.31078 -13.07981 -12.90493 -12.70457 -12.59584 -12.43600 -12.25927 -12.10362 -11.90709 -11.74495 -11.34364 -11.24477 -11.14798 -10.98289 -10.81872 -10.69283 -10.49954 -10.30513 -10.23536 -10.17500 -9.87965 -9.69345 -9.60912 -9.05845 -8.87951 -8.86493 -8.56907 -6.89575 -5.76101 -3.03519 1.17835 1.26196 2.58115 2.97657 3.43846 3.50244 3.51726 3.52205 3.61880 4.23136 4.40129 4.52811 4.59097 4.67199 4.78394 4.81936 4.84505 4.87614 4.95611 5.02345 5.15883 5.27476 5.33723 5.34823 5.42238 5.48379 5.52285 5.52837 5.54862 5.56544 5.64096 5.78382 5.79226 5.84613 5.86416 5.89678 5.94140 5.97107 6.03978 6.11962 6.26746 6.31830 6.34942 6.36034 6.43541 6.46264 6.59607 6.71808 6.83736 6.83807 6.91362 7.68730 7.73011 8.29797 8.43599 9.55144 10.12808 10.48477 11.46976 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018089 B = 0.002654 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.557374 B =10546.464684 C =11091.755259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.050 4.050 4 C -0.104 4.104 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.121 4.121 8 C -0.104 4.104 9 C -0.135 4.135 10 C -0.172 4.172 11 H 0.128 0.872 12 C 0.569 3.431 13 O -0.540 6.540 14 N -0.612 5.612 15 C 0.103 3.897 16 C -0.124 4.124 17 C -0.079 4.079 18 C -0.132 4.132 19 C 0.169 3.831 20 N -0.729 5.729 21 C -0.235 4.235 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.118 3.882 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 16.217 -18.072 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.069 4.069 3 C -0.050 4.050 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.122 4.122 9 C -0.172 4.172 10 C -0.192 4.192 11 H 0.146 0.854 12 C 0.358 3.642 13 O -0.418 6.418 14 N -0.346 5.346 15 C -0.020 4.020 16 C -0.162 4.162 17 C -0.080 4.080 18 C -0.190 4.190 19 C 0.041 3.959 20 N -0.374 5.374 21 C -0.366 4.366 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.005 4.005 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.267 16.033 -18.552 26.213 hybrid contribution 0.250 -0.932 0.705 1.195 sum -9.017 15.101 -17.847 25.057 Atomic orbital electron populations 1.21357 0.90424 1.02504 1.02508 1.20223 0.94657 0.87819 1.04157 1.18965 0.98568 0.93769 0.93700 1.21009 0.99054 0.94560 0.97542 1.21110 0.98591 0.95826 0.98137 1.21142 0.99956 0.99932 0.92916 1.21099 0.99640 0.94962 0.98204 1.20953 0.98046 0.95599 0.97629 1.23212 1.02711 0.99363 0.91925 1.22390 0.97834 1.03096 0.95921 0.85437 1.19010 0.89348 0.75927 0.79963 1.90687 1.33545 1.53001 1.64532 1.48855 1.10194 1.68061 1.07441 1.22496 0.89102 1.00497 0.89925 1.22643 0.94808 1.02887 0.95903 1.21677 0.95447 0.96970 0.93954 1.21779 1.00743 0.97997 0.98433 1.20650 0.95910 0.89502 0.89842 1.42381 1.60665 1.19878 1.14443 1.19282 1.23738 0.94172 0.99434 0.91298 1.24702 1.00707 0.98851 0.96774 1.69657 1.42386 1.38666 1.07658 0.86134 0.78317 0.84145 0.77740 1.20604 1.21904 1.21936 1.22404 0.90059 0.98587 0.89465 0.91698 0.91604 0.91674 0.86195 0.86129 0.86261 0.86162 0.86114 0.87393 0.87565 0.90636 0.91450 0.89638 0.90366 0.93406 0.90853 0.92741 0.96406 0.96380 0.78093 0.93642 0.91344 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.84 37.16 0.37 -0.43 16 2 C -0.07 -0.65 2.19 -155.66 -0.34 -0.99 16 3 C -0.05 -0.54 4.28 -104.63 -0.45 -0.99 16 4 C -0.10 -1.11 8.92 -39.58 -0.35 -1.47 16 5 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 6 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 8 C -0.10 -1.08 9.31 -39.59 -0.37 -1.45 16 9 C -0.13 -1.35 8.98 -26.74 -0.24 -1.59 16 10 C -0.17 -1.95 5.03 -91.77 -0.46 -2.41 16 11 H 0.13 1.28 7.67 -51.93 -0.40 0.88 16 12 C 0.57 8.54 6.05 -10.99 -0.07 8.48 16 13 O -0.54 -10.17 16.63 5.56 0.09 -10.08 16 14 N -0.61 -8.47 3.33 -169.05 -0.56 -9.03 16 15 C 0.10 1.17 6.41 -2.24 -0.01 1.16 16 16 C -0.12 -1.76 5.91 -25.33 -0.15 -1.91 16 17 C -0.08 -1.24 0.74 -153.09 -0.11 -1.36 16 18 C -0.13 -1.97 8.08 37.16 0.30 -1.67 16 19 C 0.17 3.47 4.88 -4.04 -0.02 3.45 16 20 N -0.73 -18.12 5.00 -59.91 -0.30 -18.42 16 21 C -0.23 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 25 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C 0.12 1.72 6.13 -2.39 -0.01 1.70 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 33 H 0.12 1.21 6.44 -52.49 -0.34 0.87 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.08 7.91 -52.49 -0.42 0.66 16 38 H 0.11 1.26 7.59 -51.93 -0.39 0.87 16 39 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.08 0.76 7.14 -51.93 -0.37 0.39 16 41 H 0.07 0.64 7.12 -51.93 -0.37 0.27 16 42 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 43 H 0.08 1.02 7.72 -51.93 -0.40 0.62 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.28 6.74 -51.93 -0.35 0.93 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.38 9.81 6.18 -40.82 -0.25 9.56 16 50 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 52 H 0.08 1.34 7.60 -51.93 -0.39 0.94 16 LS Contribution 413.83 15.07 6.24 6.24 Total: -1.00 -33.30 413.83 -10.86 -44.16 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.66 Total: 8.22 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.36 Total: -11.46 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.14 Total: -54.65 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.30 -10.86 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324764556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.230 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.05 seconds