Wall clock time and date at job start Wed Apr 1 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 115.55089 * 2 1 4 4 C 1.53006 * 117.50318 * 145.67210 * 2 1 3 5 5 H 1.08996 * 117.49394 * 359.97438 * 4 2 1 6 6 C 1.50695 * 117.50055 * 214.97953 * 4 2 1 7 7 O 1.21281 * 120.00202 * 264.04045 * 6 4 2 8 8 N 1.34774 * 120.00057 * 84.04157 * 6 4 2 9 9 C 1.46500 * 120.00143 * 179.97438 * 8 6 4 10 10 C 1.53783 * 113.61396 * 155.00346 * 9 8 6 11 11 C 1.53774 * 87.08495 * 89.11618 * 10 9 8 12 12 C 1.52994 * 113.61725 * 139.98184 * 11 10 9 13 13 N 1.46501 * 109.47198 * 175.00224 * 12 11 10 14 14 C 1.36945 * 119.99842 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99627 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99594 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00360 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.46674 * 89.99646 * 18 16 14 20 20 H 1.48495 * 109.47210 * 209.99729 * 18 16 14 21 21 H 1.48496 * 109.46919 * 329.99887 * 18 16 14 22 22 C 1.53782 * 113.61276 * 252.49844 * 9 8 6 23 23 C 1.53001 * 60.03219 * 107.47970 * 4 2 1 24 24 H 1.08995 * 117.49866 * 107.50173 * 23 4 2 25 25 C 1.50699 * 117.50040 * 252.52368 * 23 4 2 26 26 C 1.38235 * 119.99755 * 8.33990 * 25 23 4 27 27 C 1.38243 * 120.00088 * 179.80901 * 26 25 23 28 28 C 1.38235 * 119.99703 * 0.41779 * 27 26 25 29 29 C 1.38238 * 119.99968 * 359.80801 * 28 27 26 30 30 C 1.38233 * 120.00227 * 188.60528 * 25 23 4 31 31 H 1.09001 * 109.47179 * 325.71371 * 1 2 3 32 32 H 1.09003 * 109.47281 * 85.72225 * 1 2 3 33 33 H 1.09003 * 109.46960 * 205.71790 * 1 2 3 34 34 H 1.08993 * 109.47686 * 200.29017 * 3 2 1 35 35 H 1.09001 * 109.47450 * 320.29497 * 3 2 1 36 36 H 1.09006 * 109.47071 * 80.29235 * 3 2 1 37 37 H 0.97004 * 120.00001 * 0.02562 * 8 6 4 38 38 H 1.08995 * 112.85253 * 23.80360 * 9 8 6 39 39 H 1.09004 * 113.61410 * 334.56471 * 10 9 8 40 40 H 1.09001 * 113.61043 * 203.66745 * 10 9 8 41 41 H 1.09002 * 113.61553 * 270.80102 * 11 10 9 42 42 H 1.08997 * 109.47481 * 54.99950 * 12 11 10 43 43 H 1.08999 * 109.46784 * 294.99926 * 12 11 10 44 44 H 0.97001 * 120.00099 * 359.97438 * 13 12 11 45 45 H 0.97012 * 119.99694 * 180.02562 * 17 16 14 46 46 H 1.09000 * 113.61611 * 156.33611 * 22 9 8 47 47 H 1.08994 * 113.61697 * 25.42842 * 22 9 8 48 48 H 1.08002 * 120.00176 * 359.97438 * 26 25 23 49 49 H 1.07994 * 119.99999 * 180.19892 * 27 26 25 50 50 H 1.07997 * 119.99875 * 179.79123 * 28 27 26 51 51 H 1.08002 * 119.99699 * 179.97438 * 29 28 27 52 52 H 1.07991 * 120.00166 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 1.6113 -1.8578 1.2692 6 6 3.5293 -0.7806 1.4610 7 8 4.5888 -1.0009 0.9134 8 7 3.5081 -0.2317 2.6917 9 6 4.7649 0.0984 3.3682 10 6 4.6255 1.2153 4.4161 11 6 4.3047 0.1105 5.4363 12 6 4.9448 0.3375 6.8073 13 7 4.4867 -0.6974 7.7376 14 6 4.9296 -0.6979 9.0334 15 1 5.6169 0.0644 9.3694 16 6 4.4950 -1.6781 9.9149 17 7 4.9211 -1.6789 11.1603 18 14 3.3066 -2.9970 9.3335 19 1 4.0721 -4.1570 8.8105 20 1 2.4588 -3.4356 10.4710 21 1 2.4446 -2.4466 8.2569 22 6 5.1032 -0.8454 4.5342 23 6 2.2367 -1.1221 -0.7647 24 1 3.1719 -0.8769 -1.2680 25 6 1.3721 -2.1420 -1.4598 26 6 0.4893 -2.9137 -0.7277 27 6 -0.3067 -3.8466 -1.3658 28 6 -0.2136 -4.0138 -2.7348 29 6 0.6727 -3.2454 -3.4663 30 6 1.4658 -2.3098 -2.8287 31 1 -0.3633 0.8491 0.5789 32 1 -0.3634 0.0767 -1.0248 33 1 -0.3633 -0.9259 0.4460 34 1 3.2161 1.2925 -0.3563 35 1 1.6333 2.0492 -0.6565 36 1 2.1902 1.7829 1.0130 37 1 2.6607 -0.0558 3.1298 38 1 5.5916 0.2513 2.6745 39 1 3.7909 1.8903 4.2264 40 1 5.5583 1.7410 4.6205 41 1 3.2436 -0.1309 5.4994 42 1 4.6569 1.3186 7.1848 43 1 6.0297 0.2879 6.7143 44 1 3.8690 -1.3818 7.4358 45 1 4.6177 -2.3641 11.7763 46 1 6.1665 -0.8831 4.7711 47 1 4.6542 -1.8341 4.4401 48 1 0.4194 -2.7859 0.3425 49 1 -0.9988 -4.4472 -0.7943 50 1 -0.8330 -4.7450 -3.2329 51 1 0.7457 -3.3764 -4.5358 52 1 2.1583 -1.7097 -3.4001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328858701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:34 Heat of formation + Delta-G solvation = 40.019049 kcal Electronic energy + Delta-G solvation = -29149.684415 eV Core-core repulsion = 25308.454954 eV Total energy + Delta-G solvation = -3841.229461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -41.04841 -39.84306 -38.66476 -37.27724 -34.70656 -33.15526 -31.70694 -31.27763 -31.15688 -29.45524 -27.85582 -27.32367 -25.61168 -25.05502 -23.25974 -22.80943 -22.11407 -21.34574 -20.17656 -19.48632 -19.22002 -17.79202 -17.49664 -16.58689 -16.09724 -15.78979 -15.39407 -15.20778 -14.81370 -14.55688 -14.44585 -14.31597 -14.12417 -13.84745 -13.74101 -13.45480 -13.28204 -12.96510 -12.80215 -12.75701 -12.65184 -12.48988 -12.46303 -12.31795 -11.89090 -11.80146 -11.42557 -11.38409 -11.25835 -10.90071 -10.76305 -10.64562 -10.38819 -10.27012 -10.18808 -9.89624 -9.86411 -9.57718 -9.25747 -9.08978 -8.87202 -8.86606 -7.21000 -5.76174 -3.11056 0.94818 1.05535 2.36661 2.86615 3.17321 3.36547 3.39825 3.44805 3.60784 4.10644 4.23423 4.31480 4.51199 4.55896 4.59120 4.59471 4.64777 4.66245 4.73822 4.78816 4.87758 5.00789 5.01040 5.12437 5.18639 5.21221 5.25095 5.44176 5.52150 5.53282 5.53668 5.61804 5.63287 5.65594 5.69237 5.70810 5.76237 5.82594 5.84607 5.89686 5.95367 6.10438 6.12986 6.13229 6.17322 6.25639 6.28070 6.54983 6.64183 6.68746 6.82394 7.37370 8.00752 8.08854 8.43216 9.22748 9.95299 10.15513 11.42379 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002173 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.050454 B =12885.272217 C =14080.341190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.178 4.178 5 H 0.131 0.869 6 C 0.549 3.451 7 O -0.538 6.538 8 N -0.704 5.704 9 C 0.116 3.884 10 C -0.135 4.135 11 C -0.118 4.118 12 C 0.166 3.834 13 N -0.755 5.755 14 C -0.243 4.243 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.142 4.142 23 C -0.078 4.078 24 H 0.123 0.877 25 C -0.046 4.046 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.118 4.118 30 C -0.111 4.111 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.029 0.971 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 2.939 -31.606 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.179 4.179 4 C -0.199 4.199 5 H 0.149 0.851 6 C 0.335 3.665 7 O -0.414 6.414 8 N -0.354 5.354 9 C 0.011 3.989 10 C -0.174 4.174 11 C -0.137 4.137 12 C 0.039 3.961 13 N -0.401 5.401 14 C -0.373 4.373 15 H 0.107 0.893 16 C -0.194 4.194 17 N -0.583 5.583 18 Si 0.717 3.283 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.205 1.205 22 C -0.180 4.180 23 C -0.096 4.096 24 H 0.141 0.859 25 C -0.046 4.046 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.129 4.129 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.085 0.915 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.017 2.860 -31.783 33.759 hybrid contribution -1.254 -1.166 0.153 1.719 sum -12.271 1.695 -31.629 33.968 Atomic orbital electron populations 1.21437 0.91142 1.02491 1.02482 1.21744 0.95215 0.90857 1.01013 1.21426 1.00358 0.93505 1.02595 1.22677 0.98048 1.04107 0.95042 0.85144 1.19519 0.89563 0.76445 0.80957 1.90705 1.32051 1.52868 1.65801 1.45640 1.09343 1.63245 1.17218 1.21942 0.86853 0.96705 0.93435 1.23290 1.02890 0.96212 0.95005 1.22810 0.99906 0.95918 0.95087 1.20619 0.96265 0.92279 0.86897 1.42701 1.55876 1.32217 1.09283 1.19081 1.22432 1.10834 0.84935 0.89265 1.24686 1.00202 0.98878 0.95589 1.69709 1.48215 1.36451 1.03936 0.86519 0.81513 0.82766 0.77539 1.21118 1.21776 1.20463 1.23455 1.01501 0.98214 0.94853 1.21316 0.99954 0.97336 0.90997 0.85913 1.19051 0.96137 0.95915 0.93475 1.21088 0.96361 0.96259 0.99879 1.21142 0.99315 0.98224 0.94813 1.21161 0.99087 0.99759 0.94325 1.21135 0.96354 0.96188 0.99908 1.20955 0.99606 0.98582 0.93739 0.91646 0.91646 0.91851 0.91980 0.91413 0.91538 0.76373 0.88218 0.91153 0.88520 0.89601 0.95581 0.95334 0.80753 0.93102 0.88846 0.91524 0.86010 0.86013 0.86169 0.86027 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 8.61 37.15 0.32 -0.41 16 2 C -0.09 -0.65 2.70 -154.47 -0.42 -1.07 16 3 C -0.12 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.18 -1.60 5.16 -91.77 -0.47 -2.08 16 5 H 0.13 1.04 6.08 -51.93 -0.32 0.72 16 6 C 0.55 6.44 6.44 -10.99 -0.07 6.37 16 7 O -0.54 -8.39 16.20 5.56 0.09 -8.30 16 8 N -0.70 -7.32 5.26 -53.02 -0.28 -7.60 16 9 C 0.12 1.35 4.32 -67.12 -0.29 1.06 16 10 C -0.14 -1.49 7.39 -25.92 -0.19 -1.68 16 11 C -0.12 -1.68 3.63 -89.81 -0.33 -2.00 16 12 C 0.17 3.13 6.10 -4.04 -0.02 3.11 16 13 N -0.76 -17.97 5.41 -59.91 -0.32 -18.30 16 14 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 15 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 17 N -0.93 -29.64 13.97 55.49 0.78 -28.86 16 18 Si 0.89 22.31 27.74 -169.99 -4.71 17.60 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 22 C -0.14 -1.95 7.43 -25.92 -0.19 -2.15 16 23 C -0.08 -0.69 5.21 -91.73 -0.48 -1.17 16 24 H 0.12 1.23 7.87 -51.93 -0.41 0.82 16 25 C -0.05 -0.39 5.04 -104.63 -0.53 -0.92 16 26 C -0.12 -0.95 7.78 -39.58 -0.31 -1.26 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 30 C -0.11 -0.88 9.74 -39.58 -0.39 -1.27 16 31 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.38 5.93 -51.93 -0.31 0.07 16 34 H 0.06 0.53 7.81 -51.93 -0.41 0.12 16 35 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.40 3.40 8.70 -40.82 -0.36 3.05 16 38 H 0.10 1.26 7.46 -51.93 -0.39 0.88 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 44 H 0.36 8.37 5.53 -40.82 -0.23 8.14 16 45 H 0.26 7.81 8.31 -40.81 -0.34 7.47 16 46 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.12 0.86 5.19 -52.49 -0.27 0.59 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 50 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 51 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 52 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 415.91 15.07 6.27 6.27 Total: -1.00 -34.31 415.91 -11.25 -45.55 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.58 Total: 8.59 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -4.48 Total: -14.94 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.17 Total: -54.76 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.31 -11.25 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328858701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.572 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds