Wall clock time and date at job start Wed Apr 1 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 115.55894 * 2 1 4 4 C 1.52997 * 117.49931 * 145.68410 * 2 1 3 5 5 H 1.09003 * 117.49628 * 359.97438 * 4 2 1 6 6 C 1.50694 * 117.50167 * 214.97912 * 4 2 1 7 7 O 1.21286 * 120.00211 * 264.13426 * 6 4 2 8 8 N 1.34781 * 120.00048 * 84.13200 * 6 4 2 9 9 C 1.46495 * 120.00156 * 180.02562 * 8 6 4 10 10 H 1.08995 * 112.85032 * 336.19719 * 9 8 6 11 11 C 1.53787 * 113.69035 * 107.46186 * 9 8 6 12 12 C 1.53787 * 87.07825 * 89.12636 * 11 9 8 13 13 H 1.08997 * 113.69240 * 270.87605 * 12 11 9 14 14 C 1.52995 * 113.61115 * 139.97792 * 12 11 9 15 15 N 1.46498 * 109.46947 * 87.50560 * 14 12 11 16 16 C 1.36939 * 120.00407 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99225 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00656 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99465 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00363 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47374 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47170 * 299.99757 * 20 18 16 23 23 H 1.48502 * 109.47216 * 59.99477 * 20 18 16 24 24 C 1.53781 * 113.61381 * 204.99803 * 9 8 6 25 25 C 1.53003 * 60.02890 * 107.47859 * 4 2 1 26 26 H 1.09003 * 117.50025 * 107.50347 * 25 4 2 27 27 C 1.50699 * 117.50270 * 252.52202 * 25 4 2 28 28 C 1.38237 * 119.99888 * 8.33353 * 27 25 4 29 29 C 1.38231 * 120.00153 * 179.78513 * 28 27 25 30 30 C 1.38238 * 119.99960 * 0.44782 * 29 28 27 31 31 C 1.38238 * 119.99910 * 359.81089 * 30 29 28 32 32 C 1.38229 * 120.00120 * 188.61238 * 27 25 4 33 33 H 1.09001 * 109.47128 * 325.70746 * 1 2 3 34 34 H 1.08998 * 109.47053 * 85.70225 * 1 2 3 35 35 H 1.08990 * 109.47291 * 205.70271 * 1 2 3 36 36 H 1.09005 * 109.46976 * 204.28781 * 3 2 1 37 37 H 1.09003 * 109.47680 * 324.28352 * 3 2 1 38 38 H 1.09000 * 109.47533 * 84.28516 * 3 2 1 39 39 H 0.96999 * 119.99313 * 0.02562 * 8 6 4 40 40 H 1.09000 * 113.61310 * 334.58297 * 11 9 8 41 41 H 1.08996 * 113.61445 * 203.67623 * 11 9 8 42 42 H 1.09000 * 109.47784 * 327.50630 * 14 12 11 43 43 H 1.09005 * 109.47432 * 207.50176 * 14 12 11 44 44 H 0.97004 * 120.00007 * 359.97438 * 15 14 12 45 45 H 0.96999 * 119.99419 * 179.97438 * 19 18 16 46 46 H 1.08998 * 113.61173 * 156.24770 * 24 9 8 47 47 H 1.08999 * 113.61524 * 25.35389 * 24 9 8 48 48 H 1.08004 * 119.99864 * 0.02562 * 28 27 25 49 49 H 1.08001 * 120.00530 * 180.27420 * 29 28 27 50 50 H 1.07998 * 120.00040 * 179.83085 * 30 29 28 51 51 H 1.07995 * 119.99931 * 180.02562 * 31 30 29 52 52 H 1.07998 * 120.00291 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 0.7651 5 1 1.6112 -1.8581 1.2688 6 6 3.5292 -0.7810 1.4609 7 8 4.5887 -0.9997 0.9126 8 7 3.5081 -0.2340 2.6925 9 6 4.7648 0.0969 3.3687 10 1 5.6086 -0.4886 3.0039 11 6 5.0483 1.6067 3.4415 12 6 4.2719 1.6086 4.7690 13 1 3.2016 1.7770 4.6501 14 6 4.8979 2.4994 5.8438 15 7 4.3859 3.8650 5.7052 16 6 4.8074 4.8448 6.5640 17 1 5.5170 4.6106 7.3439 18 6 4.3220 6.1387 6.4330 19 7 3.4568 6.4238 5.4829 20 14 4.8975 7.4753 7.6041 21 1 4.2360 8.7581 7.2547 22 1 4.5444 7.0990 8.9967 23 1 6.3700 7.6315 7.4918 24 6 4.6507 0.1241 4.9020 25 6 2.2366 -1.1218 -0.7650 26 1 3.1719 -0.8766 -1.2683 27 6 1.3720 -2.1416 -1.4604 28 6 0.4892 -2.9135 -0.7285 29 6 -0.3071 -3.8458 -1.3669 30 6 -0.2140 -4.0127 -2.7360 31 6 0.6727 -3.2445 -3.4672 32 6 1.4659 -2.3091 -2.8293 33 1 -0.3633 0.8490 0.5790 34 1 -0.3633 0.0770 -1.0248 35 1 -0.3633 -0.9259 0.4457 36 1 3.1919 1.3039 -0.4227 37 1 1.5942 2.0681 -0.5999 38 1 2.2546 1.7523 1.0225 39 1 2.6607 -0.0594 3.1311 40 1 4.5639 2.1805 2.6516 41 1 6.1054 1.8475 3.5537 42 1 5.9815 2.5040 5.7262 43 1 4.6411 2.1136 6.8304 44 1 3.7484 4.0752 5.0050 45 1 3.1173 7.3279 5.3916 46 1 5.5991 -0.0405 5.4133 47 1 3.8454 -0.4990 5.2910 48 1 0.4188 -2.7855 0.3416 49 1 -1.0001 -4.4458 -0.7957 50 1 -0.8341 -4.7430 -3.2344 51 1 0.7452 -3.3745 -4.5368 52 1 2.1585 -1.7088 -3.4005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330598340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:01 Heat of formation + Delta-G solvation = 35.933174 kcal Electronic energy + Delta-G solvation = -29194.416221 eV Core-core repulsion = 25353.009582 eV Total energy + Delta-G solvation = -3841.406638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.95401 -39.74832 -38.56047 -37.17971 -34.51939 -33.07676 -31.62213 -31.22828 -30.84469 -29.31856 -27.67899 -26.92694 -25.49411 -24.95420 -23.36522 -22.80180 -22.14028 -21.35247 -20.09444 -19.36741 -19.04789 -17.69120 -17.03379 -16.50536 -16.00617 -15.67828 -15.27377 -15.15115 -14.78874 -14.58458 -14.31590 -14.12687 -13.98167 -13.68676 -13.66502 -13.32570 -13.24099 -12.82999 -12.76557 -12.67706 -12.61165 -12.36501 -12.32616 -12.12654 -11.74495 -11.63180 -11.32785 -11.16754 -11.02515 -10.80982 -10.65342 -10.48233 -10.35213 -10.24719 -10.09947 -9.83038 -9.77803 -9.59336 -9.21315 -8.98835 -8.82985 -8.79945 -6.89150 -5.75006 -3.03020 1.00032 1.09986 2.46065 2.94981 3.27267 3.44782 3.49008 3.50100 3.69002 4.20214 4.34562 4.41946 4.57230 4.58974 4.67570 4.68525 4.71981 4.81320 4.83478 4.87283 4.95117 5.12859 5.15217 5.17895 5.28195 5.30880 5.40356 5.59133 5.62127 5.65421 5.69024 5.72290 5.74194 5.75055 5.78213 5.88207 5.94401 5.95352 6.02765 6.07571 6.12380 6.18263 6.21283 6.25710 6.33025 6.34299 6.43558 6.65169 6.68820 6.79690 6.95034 7.47254 7.70760 8.18152 8.44401 9.55230 10.14508 10.49002 11.47908 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.001943 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.093216 B =14409.848817 C =15117.641831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.178 4.178 5 H 0.130 0.870 6 C 0.549 3.451 7 O -0.539 6.539 8 N -0.703 5.703 9 C 0.115 3.885 10 H 0.098 0.902 11 C -0.138 4.138 12 C -0.112 4.112 13 H 0.087 0.913 14 C 0.162 3.838 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.291 1.291 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.138 4.138 25 C -0.080 4.080 26 H 0.123 0.877 27 C -0.043 4.043 28 C -0.119 4.119 29 C -0.118 4.118 30 C -0.127 4.127 31 C -0.118 4.118 32 C -0.111 4.111 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.402 0.598 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 -21.855 -15.756 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.182 4.182 4 C -0.199 4.199 5 H 0.147 0.853 6 C 0.335 3.665 7 O -0.416 6.416 8 N -0.353 5.353 9 C 0.010 3.990 10 H 0.116 0.884 11 C -0.176 4.176 12 C -0.131 4.131 13 H 0.106 0.894 14 C 0.034 3.966 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.177 4.177 25 C -0.099 4.099 26 H 0.141 0.859 27 C -0.043 4.043 28 C -0.136 4.136 29 C -0.136 4.136 30 C -0.145 4.145 31 C -0.136 4.136 32 C -0.129 4.129 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.734 -21.917 -16.010 28.222 hybrid contribution -0.318 0.899 0.733 1.202 sum -8.052 -21.018 -15.277 27.203 Atomic orbital electron populations 1.21446 0.91151 1.02465 1.02510 1.21755 0.95199 0.90936 1.00571 1.21463 1.00333 0.93282 1.03086 1.22656 0.98058 1.04249 0.94953 0.85265 1.19524 0.89561 0.76346 0.81048 1.90699 1.32084 1.53469 1.65357 1.45630 1.09373 1.62977 1.17359 1.21945 0.86888 0.97327 0.92832 0.88402 1.23404 1.01437 0.94719 0.98065 1.22746 1.00042 0.94126 0.96170 0.89448 1.20640 0.95615 0.85679 0.94626 1.42334 1.53174 1.03670 1.38348 1.19205 1.20373 0.88929 1.08517 0.91312 1.24736 0.99848 0.97473 0.99049 1.69652 1.34558 1.19753 1.34353 0.86265 0.78028 0.81468 0.80414 1.21710 1.21310 1.21305 1.23314 1.02662 0.97305 0.94407 1.21339 1.00054 0.97509 0.90952 0.85915 1.19067 0.96055 0.95751 0.93467 1.21072 0.96415 0.96285 0.99861 1.21120 0.99321 0.98326 0.94799 1.21148 0.99128 0.99852 0.94331 1.21135 0.96350 0.96188 0.99891 1.20975 0.99621 0.98508 0.93782 0.91438 0.91666 0.91990 0.91970 0.91283 0.91197 0.76331 0.91353 0.89190 0.96240 0.96448 0.78349 0.93532 0.88767 0.91298 0.86030 0.86095 0.86229 0.86053 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 8.59 37.16 0.32 -0.58 16 2 C -0.08 -0.76 2.70 -154.48 -0.42 -1.17 16 3 C -0.12 -1.26 8.83 37.16 0.33 -0.93 16 4 C -0.18 -1.72 5.16 -91.77 -0.47 -2.20 16 5 H 0.13 1.02 6.08 -51.93 -0.32 0.71 16 6 C 0.55 6.86 6.51 -10.99 -0.07 6.78 16 7 O -0.54 -8.80 16.20 5.55 0.09 -8.71 16 8 N -0.70 -7.92 5.27 -53.02 -0.28 -8.20 16 9 C 0.12 1.45 4.32 -67.12 -0.29 1.16 16 10 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16 11 C -0.14 -2.03 7.43 -25.91 -0.19 -2.22 16 12 C -0.11 -1.71 3.63 -89.81 -0.33 -2.03 16 13 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.16 3.21 6.10 -4.05 -0.02 3.18 16 15 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.14 -1.66 7.39 -25.92 -0.19 -1.85 16 25 C -0.08 -0.79 5.21 -91.74 -0.48 -1.26 16 26 H 0.12 1.37 7.84 -51.93 -0.41 0.96 16 27 C -0.04 -0.39 5.04 -104.63 -0.53 -0.92 16 28 C -0.12 -0.96 7.78 -39.58 -0.31 -1.27 16 29 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 30 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 31 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 32 C -0.11 -0.94 9.74 -39.58 -0.39 -1.33 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.42 5.93 -51.93 -0.31 0.11 16 36 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 3.78 8.70 -40.82 -0.36 3.43 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 42 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.38 10.17 7.67 -40.82 -0.31 9.85 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.12 0.84 5.19 -52.48 -0.27 0.57 16 49 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 51 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 52 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 419.09 15.07 6.32 6.32 Total: -1.00 -33.12 419.09 -11.61 -44.72 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -8.62 Total: 10.73 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -4.48 Total: -15.93 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.11 Total: -54.64 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.12 -11.61 -44.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330598340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.657 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds