Wall clock time and date at job start Wed Apr 1 2020 02:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 115.55894 * 2 1 4 4 C 1.52997 * 117.49931 * 145.68410 * 2 1 3 5 5 H 1.09003 * 117.49628 * 359.97438 * 4 2 1 6 6 C 1.50694 * 117.50167 * 214.97912 * 4 2 1 7 7 O 1.21286 * 120.00211 * 264.13426 * 6 4 2 8 8 N 1.34781 * 120.00048 * 84.13200 * 6 4 2 9 9 C 1.46495 * 120.00156 * 180.02562 * 8 6 4 10 10 H 1.08995 * 112.85032 * 336.19719 * 9 8 6 11 11 C 1.53787 * 113.69035 * 107.46186 * 9 8 6 12 12 C 1.53787 * 87.07825 * 89.12636 * 11 9 8 13 13 H 1.08997 * 113.69240 * 270.87605 * 12 11 9 14 14 C 1.52995 * 113.61115 * 139.97792 * 12 11 9 15 15 N 1.46498 * 109.46947 * 87.50560 * 14 12 11 16 16 C 1.36939 * 120.00407 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99225 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00656 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99465 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00363 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47374 * 179.97438 * 20 18 16 22 22 H 1.48504 * 109.47170 * 299.99757 * 20 18 16 23 23 H 1.48502 * 109.47216 * 59.99477 * 20 18 16 24 24 C 1.53781 * 113.61381 * 204.99803 * 9 8 6 25 25 C 1.53003 * 60.02890 * 107.47859 * 4 2 1 26 26 H 1.09003 * 117.50025 * 107.50347 * 25 4 2 27 27 C 1.50699 * 117.50270 * 252.52202 * 25 4 2 28 28 C 1.38237 * 119.99888 * 8.33353 * 27 25 4 29 29 C 1.38231 * 120.00153 * 179.78513 * 28 27 25 30 30 C 1.38238 * 119.99960 * 0.44782 * 29 28 27 31 31 C 1.38238 * 119.99910 * 359.81089 * 30 29 28 32 32 C 1.38229 * 120.00120 * 188.61238 * 27 25 4 33 33 H 1.09001 * 109.47128 * 325.70746 * 1 2 3 34 34 H 1.08998 * 109.47053 * 85.70225 * 1 2 3 35 35 H 1.08990 * 109.47291 * 205.70271 * 1 2 3 36 36 H 1.09005 * 109.46976 * 204.28781 * 3 2 1 37 37 H 1.09003 * 109.47680 * 324.28352 * 3 2 1 38 38 H 1.09000 * 109.47533 * 84.28516 * 3 2 1 39 39 H 0.96999 * 119.99313 * 0.02562 * 8 6 4 40 40 H 1.09000 * 113.61310 * 334.58297 * 11 9 8 41 41 H 1.08996 * 113.61445 * 203.67623 * 11 9 8 42 42 H 1.09000 * 109.47784 * 327.50630 * 14 12 11 43 43 H 1.09005 * 109.47432 * 207.50176 * 14 12 11 44 44 H 0.97004 * 120.00007 * 359.97438 * 15 14 12 45 45 H 0.96999 * 119.99419 * 179.97438 * 19 18 16 46 46 H 1.08998 * 113.61173 * 156.24770 * 24 9 8 47 47 H 1.08999 * 113.61524 * 25.35389 * 24 9 8 48 48 H 1.08004 * 119.99864 * 0.02562 * 28 27 25 49 49 H 1.08001 * 120.00530 * 180.27420 * 29 28 27 50 50 H 1.07998 * 120.00040 * 179.83085 * 30 29 28 51 51 H 1.07995 * 119.99931 * 180.02562 * 31 30 29 52 52 H 1.07998 * 120.00291 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 0.7651 5 1 1.6112 -1.8581 1.2688 6 6 3.5292 -0.7810 1.4609 7 8 4.5887 -0.9997 0.9126 8 7 3.5081 -0.2340 2.6925 9 6 4.7648 0.0969 3.3687 10 1 5.6086 -0.4886 3.0039 11 6 5.0483 1.6067 3.4415 12 6 4.2719 1.6086 4.7690 13 1 3.2016 1.7770 4.6501 14 6 4.8979 2.4994 5.8438 15 7 4.3859 3.8650 5.7052 16 6 4.8074 4.8448 6.5640 17 1 5.5170 4.6106 7.3439 18 6 4.3220 6.1387 6.4330 19 7 3.4568 6.4238 5.4829 20 14 4.8975 7.4753 7.6041 21 1 4.2360 8.7581 7.2547 22 1 4.5444 7.0990 8.9967 23 1 6.3700 7.6315 7.4918 24 6 4.6507 0.1241 4.9020 25 6 2.2366 -1.1218 -0.7650 26 1 3.1719 -0.8766 -1.2683 27 6 1.3720 -2.1416 -1.4604 28 6 0.4892 -2.9135 -0.7285 29 6 -0.3071 -3.8458 -1.3669 30 6 -0.2140 -4.0127 -2.7360 31 6 0.6727 -3.2445 -3.4672 32 6 1.4659 -2.3091 -2.8293 33 1 -0.3633 0.8490 0.5790 34 1 -0.3633 0.0770 -1.0248 35 1 -0.3633 -0.9259 0.4457 36 1 3.1919 1.3039 -0.4227 37 1 1.5942 2.0681 -0.5999 38 1 2.2546 1.7523 1.0225 39 1 2.6607 -0.0594 3.1311 40 1 4.5639 2.1805 2.6516 41 1 6.1054 1.8475 3.5537 42 1 5.9815 2.5040 5.7262 43 1 4.6411 2.1136 6.8304 44 1 3.7484 4.0752 5.0050 45 1 3.1173 7.3279 5.3916 46 1 5.5991 -0.0405 5.4133 47 1 3.8454 -0.4990 5.2910 48 1 0.4188 -2.7855 0.3416 49 1 -1.0001 -4.4458 -0.7957 50 1 -0.8341 -4.7430 -3.2344 51 1 0.7452 -3.3745 -4.5368 52 1 2.1585 -1.7088 -3.4005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330598340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:57 Heat of formation + Delta-G solvation = 17.730578 kcal Electronic energy + Delta-G solvation = -29195.205544 eV Core-core repulsion = 25353.009582 eV Total energy + Delta-G solvation = -3842.195962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82481 -40.66279 -39.49328 -38.06116 -36.32588 -34.39172 -32.77609 -32.23534 -31.78960 -30.08226 -28.53266 -28.41025 -26.62794 -25.99739 -24.94118 -23.48633 -23.09581 -22.64057 -20.93208 -20.28496 -20.13340 -19.05759 -18.44652 -17.25098 -17.06312 -16.68710 -16.42631 -16.10394 -15.97530 -15.67463 -15.54103 -15.17041 -15.03707 -14.94187 -14.69367 -14.29450 -14.23732 -14.07903 -13.68942 -13.58138 -13.38875 -13.38693 -13.29627 -13.11413 -13.03182 -12.89387 -12.67026 -12.44377 -12.23145 -11.92330 -11.90008 -11.79646 -11.75231 -11.35990 -11.34890 -11.15866 -11.11603 -10.84722 -10.69753 -10.04429 -9.77802 -9.42320 -8.96989 -7.94416 -5.22488 0.41241 0.53397 1.46931 1.47823 1.49983 1.56069 2.03657 2.54285 2.56507 3.02484 3.38225 3.44501 3.56586 3.59186 3.60685 3.69467 3.92296 3.94502 3.95785 3.98025 4.10708 4.16897 4.25581 4.33200 4.34428 4.57200 4.58125 4.60457 4.67138 4.72498 4.77295 4.84650 4.89301 4.90360 4.92377 4.97219 4.98308 5.00675 5.02890 5.13172 5.15343 5.18993 5.24022 5.27989 5.35946 5.37372 5.49565 5.61696 5.66470 5.68180 5.73142 6.14147 6.28326 6.52904 7.21223 7.34329 8.12431 8.35001 9.28859 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.001943 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.093216 B =14409.848817 C =15117.641831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 C -0.124 4.124 4 C -0.175 4.175 5 H 0.154 0.846 6 C 0.548 3.452 7 O -0.582 6.582 8 N -0.694 5.694 9 C 0.125 3.875 10 H 0.091 0.909 11 C -0.142 4.142 12 C -0.108 4.108 13 H 0.087 0.913 14 C 0.159 3.841 15 N -0.744 5.744 16 C -0.247 4.247 17 H 0.074 0.926 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.295 1.295 22 H -0.277 1.277 23 H -0.280 1.280 24 C -0.116 4.116 25 C -0.083 4.083 26 H 0.100 0.900 27 C -0.057 4.057 28 C -0.125 4.125 29 C -0.122 4.122 30 C -0.131 4.131 31 C -0.124 4.124 32 C -0.128 4.128 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.414 0.586 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.134 0.866 49 H 0.142 0.858 50 H 0.141 0.859 51 H 0.138 0.862 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 -23.602 -14.999 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.182 4.182 4 C -0.196 4.196 5 H 0.172 0.828 6 C 0.335 3.665 7 O -0.462 6.462 8 N -0.344 5.344 9 C 0.019 3.981 10 H 0.109 0.891 11 C -0.180 4.180 12 C -0.127 4.127 13 H 0.105 0.895 14 C 0.033 3.967 15 N -0.386 5.386 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.221 1.221 22 H -0.203 1.203 23 H -0.206 1.206 24 C -0.155 4.155 25 C -0.102 4.102 26 H 0.118 0.882 27 C -0.057 4.057 28 C -0.143 4.143 29 C -0.140 4.140 30 C -0.149 4.149 31 C -0.142 4.142 32 C -0.146 4.146 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.040 0.960 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.151 0.849 49 H 0.160 0.840 50 H 0.159 0.841 51 H 0.156 0.844 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.015 -23.697 -15.221 29.572 hybrid contribution 0.130 1.404 0.452 1.481 sum -8.885 -22.292 -14.769 28.178 Atomic orbital electron populations 1.21437 0.89539 1.03373 1.02728 1.21741 0.96101 0.89848 0.99763 1.21440 0.99678 0.94519 1.02517 1.22687 0.96938 1.05125 0.94809 0.82836 1.19999 0.89972 0.75497 0.80985 1.90681 1.33874 1.55336 1.66333 1.45564 1.09528 1.62203 1.17088 1.21759 0.87345 0.95340 0.93615 0.89081 1.23403 1.00812 0.96377 0.97453 1.22659 0.99628 0.95620 0.94795 0.89492 1.20829 0.95612 0.83909 0.96346 1.42557 1.53069 1.05414 1.37609 1.19627 1.19810 0.89824 1.08642 0.90803 1.25568 1.00546 0.99802 1.00999 1.69810 1.36080 1.19852 1.36210 0.85216 0.77628 0.78304 0.78643 1.22124 1.20269 1.20582 1.23224 1.03965 0.94617 0.93667 1.21241 0.99596 0.98359 0.90976 0.88171 1.19071 0.96661 0.96170 0.93763 1.21235 0.96290 0.96296 1.00468 1.21429 0.99300 0.98109 0.95157 1.21481 0.98952 0.99893 0.94544 1.21391 0.96094 0.95805 1.00918 1.21140 1.00281 0.99262 0.93956 0.91023 0.91698 0.90632 0.93856 0.90327 0.92022 0.74916 0.92994 0.89906 0.96357 0.96046 0.79511 0.94048 0.87700 0.88905 0.84870 0.84000 0.84126 0.84418 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.59 71.98 0.62 -0.93 16 2 C -0.07 -1.30 2.70 -52.16 -0.14 -1.44 16 3 C -0.12 -2.59 8.83 71.98 0.64 -1.95 16 4 C -0.18 -3.24 5.16 -11.54 -0.06 -3.30 16 5 H 0.15 2.07 6.08 -2.39 -0.01 2.05 16 6 C 0.55 13.58 6.51 87.65 0.57 14.15 16 7 O -0.58 -19.50 16.20 -3.05 -0.05 -19.55 16 8 N -0.69 -14.96 5.27 -440.04 -2.32 -17.28 16 9 C 0.13 3.05 4.32 45.52 0.20 3.24 16 10 H 0.09 2.43 7.46 -2.39 -0.02 2.41 16 11 C -0.14 -4.20 7.43 31.12 0.23 -3.97 16 12 C -0.11 -3.20 3.63 -10.27 -0.04 -3.24 16 13 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.16 6.21 6.10 86.38 0.53 6.74 16 15 N -0.74 -37.89 5.60 -343.45 -1.92 -39.82 16 16 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 20 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 C -0.12 -2.52 7.39 31.12 0.23 -2.29 16 25 C -0.08 -1.65 5.21 -11.52 -0.06 -1.71 16 26 H 0.10 2.43 7.84 -2.39 -0.02 2.41 16 27 C -0.06 -0.99 5.04 -19.87 -0.10 -1.09 16 28 C -0.13 -1.80 7.78 22.27 0.17 -1.63 16 29 C -0.12 -1.50 10.05 22.27 0.22 -1.28 16 30 C -0.13 -1.59 10.05 22.27 0.22 -1.37 16 31 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 32 C -0.13 -2.16 9.74 22.27 0.22 -1.94 16 33 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.83 5.93 -2.39 -0.01 0.81 16 36 H 0.04 1.05 7.89 -2.38 -0.02 1.03 16 37 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.41 7.04 8.70 -92.71 -0.81 6.24 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 2.56 7.90 -2.39 -0.02 2.54 16 42 H 0.02 0.73 7.84 -2.39 -0.02 0.71 16 43 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.37 20.18 7.67 -92.70 -0.71 19.47 16 45 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.13 1.50 5.19 -2.91 -0.02 1.48 16 49 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 50 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 51 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 52 H 0.12 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -71.99 419.09 2.40 -69.59 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.60 Total: 38.45 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.98 Total: -20.58 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.96 Total: -116.32 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.99 2.40 -69.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330598340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.319 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds