Wall clock time and date at job start Wed Apr 1 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 115.54902 * 2 1 4 4 C 1.38235 * 120.00047 * 86.92206 * 3 2 1 5 5 C 1.38240 * 119.99620 * 179.74479 * 4 3 2 6 6 C 1.38234 * 120.00120 * 0.54584 * 5 4 3 7 7 C 1.38232 * 119.99780 * 359.70560 * 6 5 4 8 8 C 1.38233 * 120.00328 * 0.02562 * 7 6 5 9 9 C 1.52999 * 117.49571 * 214.28703 * 2 1 3 10 10 C 1.52993 * 60.00222 * 252.51168 * 9 2 1 11 11 H 1.08999 * 117.51778 * 107.48215 * 10 9 2 12 12 C 1.50695 * 117.50223 * 252.51334 * 10 9 2 13 13 O 1.21276 * 120.00139 * 28.00872 * 12 10 9 14 14 N 1.34784 * 120.00084 * 208.01347 * 12 10 9 15 15 C 1.46499 * 119.99697 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.46852 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47306 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47333 * 180.02562 * 17 16 15 19 19 C 1.36938 * 119.99935 * 90.00215 * 18 17 16 20 20 H 1.07998 * 119.99820 * 216.87594 * 19 18 17 21 21 C 1.38812 * 120.00017 * 37.14947 * 19 18 17 22 22 N 1.31620 * 119.99803 * 19.83229 * 21 19 18 23 23 Si 1.86799 * 120.00123 * 199.83139 * 21 19 18 24 24 H 1.48497 * 109.47202 * 60.00062 * 23 21 19 25 25 H 1.48499 * 109.46957 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46762 * 299.99984 * 23 21 19 27 27 C 1.46498 * 120.00091 * 269.99997 * 18 17 16 28 28 C 1.53000 * 117.50168 * 193.72593 * 27 18 17 29 29 C 1.53002 * 117.49660 * 125.06960 * 27 18 17 30 30 H 1.09003 * 109.47125 * 274.33229 * 1 2 3 31 31 H 1.09000 * 109.46975 * 34.33013 * 1 2 3 32 32 H 1.09001 * 109.46922 * 154.33609 * 1 2 3 33 33 H 1.07994 * 120.00414 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.99532 * 180.27671 * 5 4 3 35 35 H 1.08004 * 120.00027 * 179.72821 * 6 5 4 36 36 H 1.08007 * 120.00103 * 179.97438 * 7 6 5 37 37 H 1.08005 * 119.99898 * 179.97438 * 8 7 6 38 38 H 1.09004 * 117.49566 * 145.01832 * 9 2 1 39 39 H 1.08997 * 117.50438 * 0.02562 * 9 2 1 40 40 H 0.97000 * 119.99733 * 359.97438 * 14 12 10 41 41 H 1.09003 * 109.47263 * 60.00442 * 15 14 12 42 42 H 1.08994 * 109.47757 * 299.99934 * 15 14 12 43 43 H 1.09007 * 109.47062 * 60.00291 * 16 15 14 44 44 H 1.09005 * 109.47509 * 300.00409 * 16 15 14 45 45 H 1.09007 * 109.46726 * 60.00203 * 17 16 15 46 46 H 1.08997 * 109.47443 * 300.00908 * 17 16 15 47 47 H 0.97004 * 120.00362 * 184.93459 * 22 21 19 48 48 H 1.09000 * 115.54912 * 339.40565 * 27 18 17 49 49 H 1.09003 * 117.49263 * 0.02562 * 28 27 18 50 50 H 1.08993 * 117.50037 * 145.02139 * 28 27 18 51 51 H 1.09004 * 117.49740 * 214.98087 * 29 27 18 52 52 H 1.09000 * 117.49950 * 359.97182 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 2.4200 2.0109 1.1954 5 6 3.0211 3.2558 1.1956 6 6 3.3717 3.8543 -0.0001 7 6 3.1268 3.2052 -1.1958 8 6 2.5309 1.9579 -1.1957 9 6 2.2364 -1.1213 -0.7645 10 6 2.2365 -1.1208 0.7654 11 1 1.6112 -1.8578 1.2693 12 6 3.5292 -0.7806 1.4611 13 8 4.3381 -0.0582 0.9184 14 7 3.7865 -1.2794 2.6865 15 6 5.0436 -0.9492 3.3626 16 6 5.0843 -1.6378 4.7282 17 6 6.3974 -1.2935 5.4341 18 7 6.4367 -1.9533 6.7415 19 6 6.9691 -3.2095 6.8587 20 1 6.5286 -3.9211 7.5414 21 6 8.0782 -3.5664 6.1042 22 7 8.8498 -2.6341 5.5868 23 14 8.4758 -5.3699 5.8233 24 1 7.3408 -6.0239 5.1240 25 1 9.7013 -5.4830 4.9923 26 1 8.7018 -6.0363 7.1310 27 6 5.9064 -1.2693 7.9235 28 6 6.2571 -1.8523 9.2939 29 6 4.8373 -1.9973 8.7407 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 0.8487 -0.5796 32 1 -0.3633 -0.9263 -0.4451 33 1 2.1415 1.5456 2.1293 34 1 3.2127 3.7627 2.1298 35 1 3.8372 4.8288 -0.0002 36 1 3.4003 3.6729 -2.1301 37 1 2.3392 1.4510 -2.1300 38 1 3.1715 -0.8757 -1.2680 39 1 1.6112 -1.8588 -1.2679 40 1 3.1394 -1.8570 3.1207 41 1 5.1105 0.1303 3.4983 42 1 5.8827 -1.2919 2.7573 43 1 5.0172 -2.7173 4.5930 44 1 4.2452 -1.2946 5.3334 45 1 6.4649 -0.2139 5.5693 46 1 7.2362 -1.6369 4.8288 47 1 9.5826 -2.8808 5.0010 48 1 5.8270 -0.1852 7.8431 49 1 6.8827 -2.7447 9.3159 50 1 6.4081 -1.1518 10.1151 51 1 4.0547 -1.3920 9.1983 52 1 4.5281 -2.9850 8.3986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479872487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:40 Heat of formation + Delta-G solvation = 53.835683 kcal Electronic energy + Delta-G solvation = -29581.824969 eV Core-core repulsion = 25741.194642 eV Total energy + Delta-G solvation = -3840.630327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.58288 -38.76393 -37.25506 -36.87924 -35.09735 -33.54590 -31.59650 -30.87190 -30.74746 -29.50935 -28.77117 -25.77666 -24.30732 -23.22112 -22.96195 -22.16814 -21.38392 -20.94718 -20.24481 -19.81119 -19.33594 -17.46650 -16.57561 -16.36442 -15.68306 -15.58201 -15.10024 -14.94971 -14.78744 -14.56242 -14.37205 -14.06809 -13.96634 -13.51835 -13.38885 -13.30125 -12.97219 -12.80376 -12.65457 -12.32662 -12.01590 -11.98705 -11.86788 -11.48429 -11.18177 -11.10743 -10.99076 -10.82150 -10.78993 -10.59992 -10.55238 -10.40362 -10.17590 -10.12517 -9.88611 -9.57961 -9.50315 -9.26376 -8.88972 -8.80024 -8.58193 -8.44171 -6.58456 -5.79214 -3.45849 1.38118 1.45907 2.54128 3.31137 3.34699 3.40307 3.41084 3.67642 3.80658 4.37894 4.41452 4.52443 4.60564 4.80601 4.93191 4.96054 5.00313 5.03347 5.11468 5.14332 5.34360 5.36557 5.40696 5.43403 5.51266 5.63962 5.64688 5.68855 5.73810 5.82257 5.89511 5.90757 6.02735 6.03688 6.04571 6.12657 6.23806 6.39596 6.45462 6.48434 6.49386 6.53780 6.60107 6.60608 6.71118 6.82355 6.95341 7.02827 7.10777 7.16011 7.64513 7.74564 7.75650 8.44359 8.46223 9.12614 9.74616 10.30790 11.14457 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002450 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.609287 B =11427.940377 C =11938.082028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.061 4.061 3 C -0.034 4.034 4 C -0.094 4.094 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.106 4.106 9 C -0.134 4.134 10 C -0.181 4.181 11 H 0.120 0.880 12 C 0.534 3.466 13 O -0.529 6.529 14 N -0.724 5.724 15 C 0.124 3.876 16 C -0.144 4.144 17 C 0.150 3.850 18 N -0.550 5.550 19 C -0.259 4.259 20 H 0.062 0.938 21 C 0.013 3.987 22 N -0.883 5.883 23 Si 0.897 3.103 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.127 3.873 28 C -0.198 4.198 29 C -0.228 4.228 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.397 0.603 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.027 0.973 46 H 0.101 0.899 47 H 0.256 0.744 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 7.755 -11.864 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.034 4.034 4 C -0.112 4.112 5 C -0.134 4.134 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.124 4.124 9 C -0.171 4.171 10 C -0.202 4.202 11 H 0.138 0.862 12 C 0.320 3.680 13 O -0.406 6.406 14 N -0.375 5.375 15 C 0.001 3.999 16 C -0.184 4.184 17 C 0.024 3.976 18 N -0.265 5.265 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.187 4.187 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.207 1.207 27 C 0.018 3.982 28 C -0.237 4.237 29 C -0.269 4.269 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.231 0.769 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.045 0.955 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.105 0.895 49 H 0.116 0.884 50 H 0.091 0.909 51 H 0.090 0.910 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.265 8.274 -12.319 22.017 hybrid contribution -0.017 -1.435 0.310 1.468 sum -16.282 6.839 -12.009 21.356 Atomic orbital electron populations 1.21365 0.90561 1.02445 1.02480 1.20159 0.94361 0.88080 1.03540 1.18764 0.98095 0.93123 0.93444 1.20817 0.98384 0.94855 0.97136 1.21053 0.98747 0.95551 0.98015 1.21080 1.00337 0.99944 0.92704 1.21033 0.99646 0.95394 0.97906 1.20825 0.99041 0.95345 0.97218 1.23198 1.02988 0.99620 0.91310 1.22472 0.98185 1.03478 0.96092 0.86199 1.19499 0.86956 0.80183 0.81408 1.90729 1.48055 1.36513 1.65301 1.46085 1.21956 1.51498 1.17940 1.21408 0.84906 0.99786 0.93841 1.22434 1.02007 1.00728 0.93252 1.20852 0.95391 0.94018 0.87366 1.43382 1.67213 1.15675 1.00249 1.18924 1.06547 0.88236 1.25136 0.92043 1.25169 0.94284 0.97463 1.01799 1.70016 1.16881 1.31892 1.33681 0.86469 0.77444 0.85376 0.78110 1.20884 1.21491 1.20661 1.21137 0.98040 0.93210 0.85841 1.23073 0.98301 1.04227 0.98078 1.23369 0.91928 1.03111 1.08481 0.91754 0.91515 0.91787 0.86987 0.86360 0.86457 0.86406 0.86472 0.87502 0.87683 0.76905 0.92152 0.91668 0.91695 0.93089 0.95472 0.88178 0.93389 0.89533 0.88381 0.90856 0.91037 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.84 37.16 0.37 -0.45 16 2 C -0.06 -0.60 2.17 -155.66 -0.34 -0.94 16 3 C -0.03 -0.41 3.58 -104.63 -0.37 -0.79 16 4 C -0.09 -1.20 7.81 -39.58 -0.31 -1.51 16 5 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 6 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 7 C -0.12 -1.35 10.05 -39.59 -0.40 -1.74 16 8 C -0.11 -1.21 9.52 -39.58 -0.38 -1.59 16 9 C -0.13 -1.30 9.20 -26.73 -0.25 -1.54 16 10 C -0.18 -1.93 5.89 -91.78 -0.54 -2.47 16 11 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 12 C 0.53 7.72 6.37 -10.98 -0.07 7.65 16 13 O -0.53 -9.56 14.28 5.56 0.08 -9.48 16 14 N -0.72 -10.13 5.56 -60.30 -0.33 -10.47 16 15 C 0.12 2.08 5.67 -4.04 -0.02 2.05 16 16 C -0.14 -2.63 5.65 -26.73 -0.15 -2.78 16 17 C 0.15 3.35 5.33 -4.04 -0.02 3.33 16 18 N -0.55 -13.19 2.79 -165.66 -0.46 -13.65 16 19 C -0.26 -6.79 8.09 -15.06 -0.12 -6.92 16 20 H 0.06 1.63 7.18 -52.49 -0.38 1.25 16 21 C 0.01 0.36 5.00 -17.43 -0.09 0.27 16 22 N -0.88 -24.78 11.33 55.49 0.63 -24.15 16 23 Si 0.90 21.15 29.60 -169.99 -5.03 16.12 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.69 6.61 -67.93 -0.45 2.24 16 28 C -0.20 -3.95 9.80 -26.70 -0.26 -4.21 16 29 C -0.23 -4.29 10.09 -26.69 -0.27 -4.55 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 33 H 0.11 1.41 7.89 -52.49 -0.41 1.00 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.11 1.23 7.94 -51.93 -0.41 0.82 16 39 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.40 4.59 8.47 -40.82 -0.35 4.25 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.03 0.58 8.04 -51.92 -0.42 0.16 16 46 H 0.10 2.55 5.42 -51.93 -0.28 2.27 16 47 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 48 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 49 H 0.10 2.17 6.92 -51.93 -0.36 1.81 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.08 1.67 8.03 -51.93 -0.42 1.26 16 LS Contribution 423.36 15.07 6.38 6.38 Total: -1.00 -30.74 423.36 -12.11 -42.85 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.90 Total: 9.98 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -4.47 Total: -17.58 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.17 Total: -48.28 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -30.74 -12.11 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479872487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.689 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds