Wall clock time and date at job start Wed Apr 1 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 115.56114 * 2 1 4 4 C 1.52996 * 117.49692 * 214.31420 * 2 1 3 5 5 H 1.09000 * 117.50205 * 145.01983 * 4 2 1 6 6 C 1.50699 * 117.50024 * 359.97438 * 4 2 1 7 7 O 1.21280 * 119.99948 * 51.60589 * 6 4 2 8 8 N 1.34773 * 120.00302 * 231.60801 * 6 4 2 9 9 C 1.46497 * 120.00288 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47142 * 179.97438 * 9 8 6 11 11 H 1.09006 * 109.46733 * 65.00546 * 10 9 8 12 12 N 1.46494 * 109.47576 * 305.00182 * 10 9 8 13 13 C 1.36943 * 120.00434 * 154.99662 * 12 10 9 14 14 H 1.08006 * 119.99446 * 0.02562 * 13 12 10 15 15 C 1.38807 * 120.00265 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99790 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99946 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46925 * 90.00043 * 17 15 13 19 19 H 1.48504 * 109.47245 * 209.99669 * 17 15 13 20 20 H 1.48493 * 109.47420 * 330.00218 * 17 15 13 21 21 C 1.52998 * 109.47217 * 184.99888 * 10 9 8 22 22 C 1.53003 * 117.50348 * 248.62387 * 21 10 9 23 23 C 1.52999 * 60.00200 * 252.50884 * 22 21 10 24 24 C 1.53001 * 117.49730 * 145.69152 * 2 1 3 25 25 H 1.08993 * 117.51954 * 0.02562 * 24 2 1 26 26 C 1.50697 * 117.49516 * 214.97445 * 24 2 1 27 27 C 1.38235 * 119.99588 * 119.99150 * 26 24 2 28 28 C 1.38242 * 119.99948 * 179.97438 * 27 26 24 29 29 C 1.38236 * 119.99936 * 0.06841 * 28 27 26 30 30 C 1.38227 * 119.99863 * 359.90580 * 29 28 27 31 31 C 1.38223 * 120.00369 * 299.96721 * 26 24 2 32 32 H 1.09005 * 109.47165 * 278.86758 * 1 2 3 33 33 H 1.08997 * 109.47178 * 38.86413 * 1 2 3 34 34 H 1.09000 * 109.47133 * 158.86670 * 1 2 3 35 35 H 1.08997 * 109.46954 * 205.68732 * 3 2 1 36 36 H 1.09001 * 109.46944 * 325.69286 * 3 2 1 37 37 H 1.08999 * 109.46712 * 85.69120 * 3 2 1 38 38 H 0.97007 * 119.99694 * 359.97438 * 8 6 4 39 39 H 1.08998 * 109.47466 * 299.99767 * 9 8 6 40 40 H 1.09006 * 109.47277 * 60.00255 * 9 8 6 41 41 H 0.97004 * 120.00282 * 335.00348 * 12 10 9 42 42 H 0.97003 * 119.99569 * 179.97438 * 16 15 13 43 43 H 1.09001 * 115.55182 * 34.33857 * 21 10 9 44 44 H 1.08996 * 117.49722 * 0.02562 * 22 21 10 45 45 H 1.08995 * 117.49542 * 145.01865 * 22 21 10 46 46 H 1.08999 * 117.49855 * 252.50863 * 23 22 21 47 47 H 1.09000 * 117.51583 * 107.47911 * 23 22 21 48 48 H 1.07997 * 120.00058 * 359.69386 * 27 26 24 49 49 H 1.07997 * 119.99896 * 179.97438 * 28 27 26 50 50 H 1.08001 * 119.99922 * 180.02562 * 29 28 27 51 51 H 1.08000 * 119.99963 * 180.02562 * 30 29 28 52 52 H 1.08005 * 120.00344 * 0.02562 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 1 3.1715 -0.8752 -1.2684 6 6 1.3720 -2.1408 -1.4604 7 8 0.4895 -1.7783 -2.2092 8 7 1.5795 -3.4558 -1.2502 9 6 0.7388 -4.4473 -1.9258 10 6 1.1810 -5.8539 -1.5176 11 1 0.9974 -5.9978 -0.4528 12 7 2.6107 -6.0156 -1.7929 13 6 3.3451 -6.9301 -1.0859 14 1 2.8701 -7.5324 -0.3256 15 6 4.6999 -7.0828 -1.3464 16 7 5.4058 -7.9614 -0.6665 17 14 5.5216 -6.0406 -2.6609 18 1 6.0339 -4.7875 -2.0505 19 1 6.6508 -6.7975 -3.2588 20 1 4.5336 -5.7081 -3.7184 21 6 0.3875 -6.8899 -2.3164 22 6 -0.6221 -7.7491 -1.5525 23 6 0.6859 -8.3669 -2.0506 24 6 2.2364 -1.1210 0.7650 25 1 1.6115 -1.8589 1.2679 26 6 3.5293 -0.7812 1.4607 27 6 3.6392 -0.9376 2.8297 28 6 4.8253 -0.6264 3.4680 29 6 5.9010 -0.1573 2.7373 30 6 5.7912 -0.0014 1.3682 31 6 4.6053 -0.3135 0.7299 32 1 -0.3634 0.1584 1.0154 33 1 -0.3633 0.8002 -0.6448 34 1 -0.3633 -0.9585 -0.3705 35 1 3.1824 1.3084 -0.4454 36 1 1.5811 2.0743 -0.5792 37 1 2.2773 1.7413 1.0248 38 1 2.2856 -3.7458 -0.6516 39 1 -0.3022 -4.2961 -1.6402 40 1 0.8396 -4.3341 -3.0053 41 1 3.0374 -5.4749 -2.4760 42 1 6.3525 -8.0684 -0.8489 43 1 0.1345 -6.6034 -3.3372 44 1 -0.7214 -7.5759 -0.4809 45 1 -1.5397 -8.0277 -2.0706 46 1 0.6289 -9.0520 -2.8965 47 1 1.4478 -8.6005 -1.3070 48 1 2.7971 -1.2987 3.4013 49 1 4.9111 -0.7482 4.5376 50 1 6.8278 0.0854 3.2358 51 1 6.6316 0.3647 0.7973 52 1 4.5194 -0.1912 -0.3398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480022179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:18 Heat of formation + Delta-G solvation = 46.228001 kcal Electronic energy + Delta-G solvation = -30283.280410 eV Core-core repulsion = 26442.320189 eV Total energy + Delta-G solvation = -3840.960221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.69856 -39.13405 -37.84999 -37.04284 -34.74670 -33.44719 -31.42943 -31.25147 -30.99364 -29.51461 -28.17571 -27.52009 -24.88898 -23.47429 -22.61798 -22.30908 -21.73379 -21.34954 -20.10731 -19.57734 -19.05757 -17.73770 -17.16469 -16.43386 -15.70773 -15.68416 -15.28609 -15.12331 -14.74296 -14.55449 -14.29724 -14.11087 -13.97627 -13.49455 -13.46462 -13.31906 -12.98837 -12.81225 -12.66796 -12.60529 -12.41462 -12.27214 -12.15896 -11.60454 -11.53432 -11.37168 -11.12835 -10.95755 -10.94656 -10.90139 -10.74742 -10.49882 -10.28478 -9.97574 -9.77136 -9.72024 -9.49685 -9.38558 -9.02651 -8.97384 -8.76651 -8.55813 -7.37351 -5.83622 -3.19737 1.23016 1.33839 2.77501 3.21887 3.32613 3.36732 3.41435 3.49096 3.89246 4.33101 4.39050 4.53143 4.55284 4.62162 4.77781 4.90670 4.92893 5.01634 5.05767 5.08977 5.24037 5.31727 5.37929 5.42313 5.47334 5.50159 5.55049 5.55726 5.65242 5.74247 5.76445 5.80383 5.83229 5.88384 5.90598 5.93206 5.96304 5.97379 6.03616 6.11767 6.17610 6.26032 6.40400 6.44671 6.47499 6.54343 6.54593 6.71709 6.77882 6.92029 6.98060 7.81316 7.90394 8.34247 8.44763 9.11851 9.84648 10.03764 11.34089 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003886 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.333387 B = 7204.198286 C = 9097.210349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.171 4.171 5 H 0.132 0.868 6 C 0.542 3.458 7 O -0.544 6.544 8 N -0.712 5.712 9 C 0.115 3.885 10 C 0.199 3.801 11 H 0.063 0.937 12 N -0.742 5.742 13 C -0.241 4.241 14 H 0.092 0.908 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.878 3.122 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.164 4.164 22 C -0.193 4.193 23 C -0.154 4.154 24 C -0.097 4.097 25 H 0.119 0.881 26 C -0.045 4.045 27 C -0.110 4.110 28 C -0.117 4.117 29 C -0.125 4.125 30 C -0.117 4.117 31 C -0.117 4.117 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 16.758 5.244 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.078 4.078 3 C -0.173 4.173 4 C -0.192 4.192 5 H 0.150 0.850 6 C 0.327 3.673 7 O -0.422 6.422 8 N -0.364 5.364 9 C -0.009 4.009 10 C 0.089 3.911 11 H 0.081 0.919 12 N -0.384 5.384 13 C -0.371 4.371 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.578 5.578 17 Si 0.709 3.291 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.186 4.186 22 C -0.231 4.231 23 C -0.191 4.191 24 C -0.115 4.115 25 H 0.137 0.863 26 C -0.045 4.045 27 C -0.128 4.128 28 C -0.135 4.135 29 C -0.143 4.143 30 C -0.135 4.135 31 C -0.135 4.135 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.248 0.752 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.129 0.871 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.724 16.820 4.877 18.759 hybrid contribution 1.274 0.217 -0.893 1.571 sum -5.450 17.037 3.984 18.325 Atomic orbital electron populations 1.21448 0.91141 1.03676 1.01359 1.21610 0.95290 0.90798 1.00127 1.21413 1.00196 0.93532 1.02142 1.22706 1.02045 1.00238 0.94171 0.85026 1.19530 0.83586 0.82735 0.81407 1.90669 1.33256 1.80604 1.37675 1.46063 1.37017 1.05170 1.48129 1.21660 0.94118 0.87976 0.97168 1.20008 0.84539 0.89242 0.97275 0.91872 1.42833 1.03870 1.46809 1.44905 1.18992 0.90673 1.13256 1.14149 0.89027 1.24620 0.96356 0.98707 0.98914 1.69688 1.07519 1.37191 1.43354 0.86652 0.79430 0.80447 0.82603 1.21069 1.21835 1.20387 1.22954 1.01497 0.94413 0.99708 1.22938 0.93596 1.06670 0.99880 1.22838 0.97995 0.94900 1.03404 1.21377 0.96566 1.02011 0.91526 0.86324 1.19011 0.93408 0.98615 0.93433 1.20940 0.97968 1.00159 0.93718 1.21117 0.93265 0.99252 0.99887 1.21134 0.98699 1.00155 0.94317 1.21111 0.97451 1.00126 0.94790 1.21066 0.92979 0.99613 0.99829 0.92358 0.91744 0.91212 0.92014 0.91885 0.91809 0.75214 0.91253 0.91856 0.80503 0.93039 0.89181 0.89425 0.90054 0.90214 0.87102 0.86001 0.86081 0.86266 0.86162 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.28 37.16 0.34 -0.98 16 2 C -0.08 -0.86 2.70 -154.51 -0.42 -1.28 16 3 C -0.12 -1.10 8.62 37.16 0.32 -0.77 16 4 C -0.17 -2.17 5.11 -91.77 -0.47 -2.64 16 5 H 0.13 1.60 6.08 -51.93 -0.32 1.28 16 6 C 0.54 8.34 6.36 -10.99 -0.07 8.27 16 7 O -0.54 -9.77 15.38 5.56 0.09 -9.69 16 8 N -0.71 -11.04 5.39 -60.30 -0.32 -11.36 16 9 C 0.12 1.82 5.22 -4.04 -0.02 1.80 16 10 C 0.20 3.50 2.70 -67.93 -0.18 3.32 16 11 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 12 N -0.74 -15.89 4.34 -53.43 -0.23 -16.13 16 13 C -0.24 -6.19 9.11 -15.06 -0.14 -6.33 16 14 H 0.09 2.53 7.14 -52.48 -0.37 2.16 16 15 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 16 N -0.93 -27.93 13.97 55.49 0.78 -27.16 16 17 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C -0.16 -2.74 5.36 -90.62 -0.49 -3.23 16 22 C -0.19 -2.87 10.18 -26.73 -0.27 -3.14 16 23 C -0.15 -2.72 9.78 -26.73 -0.26 -2.98 16 24 C -0.10 -1.11 5.47 -91.77 -0.50 -1.61 16 25 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 26 C -0.04 -0.52 5.04 -104.63 -0.53 -1.04 16 27 C -0.11 -1.21 9.74 -39.58 -0.39 -1.59 16 28 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 29 C -0.13 -1.29 10.05 -39.59 -0.40 -1.68 16 30 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 31 C -0.12 -1.33 7.78 -39.58 -0.31 -1.64 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.07 0.92 5.66 -51.93 -0.29 0.63 16 35 H 0.06 0.57 5.91 -51.93 -0.31 0.26 16 36 H 0.06 0.55 7.98 -51.93 -0.41 0.14 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.41 6.55 8.14 -40.82 -0.33 6.22 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 44 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.11 2.29 6.23 -51.93 -0.32 1.96 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 49 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 52 H 0.12 1.28 5.17 -52.48 -0.27 1.01 16 LS Contribution 413.11 15.07 6.23 6.23 Total: -1.00 -30.41 413.11 -11.19 -41.60 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -8.34 Total: 18.39 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -4.66 Total: -18.60 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.22 Total: -54.64 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.41 -11.19 -41.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480022179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.831 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds