Wall clock time and date at job start Wed Apr 1 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50705 * 109.46836 * 2 1 4 4 C 1.38256 * 119.99756 * 264.97806 * 3 2 1 5 5 C 1.38219 * 119.99945 * 180.02562 * 4 3 2 6 6 C 1.38263 * 119.99742 * 359.95780 * 5 4 3 7 7 C 1.38217 * 120.00053 * 359.85316 * 6 5 4 8 8 C 1.38212 * 120.00194 * 85.00002 * 3 2 1 9 9 C 1.50705 * 119.99823 * 359.97438 * 8 3 2 10 10 H 1.08996 * 115.56177 * 334.30692 * 9 8 3 11 11 C 1.53001 * 117.49714 * 188.62229 * 9 8 3 12 12 C 1.52998 * 59.99974 * 252.51341 * 11 9 8 13 13 H 1.08998 * 117.50196 * 107.51357 * 12 11 9 14 14 C 1.50708 * 117.49678 * 252.51402 * 12 11 9 15 15 O 1.21276 * 119.99745 * 68.60660 * 14 12 11 16 16 N 1.34779 * 119.99887 * 248.60951 * 14 12 11 17 17 C 1.47417 * 125.64730 * 5.10114 * 16 14 12 18 18 C 1.54909 * 104.83369 * 155.83782 * 17 16 14 19 19 C 1.55155 * 101.57925 * 37.00914 * 18 17 16 20 20 C 1.47020 * 125.64656 * 185.06542 * 16 14 12 21 21 H 1.08994 * 109.88345 * 300.66323 * 20 16 14 22 22 C 1.52999 * 109.88519 * 61.67393 * 20 16 14 23 23 N 1.46499 * 109.47263 * 184.49498 * 22 20 16 24 24 C 1.36930 * 119.99969 * 185.05744 * 23 22 20 25 25 H 1.08007 * 120.00251 * 0.02562 * 24 23 22 26 26 C 1.38810 * 120.00323 * 180.02562 * 24 23 22 27 27 N 1.31625 * 119.99669 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00677 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.46533 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.46823 * 119.99693 * 28 26 24 31 31 H 1.48487 * 109.47252 * 240.00394 * 28 26 24 32 32 H 1.08999 * 109.47126 * 299.99689 * 1 2 3 33 33 H 1.08992 * 109.46959 * 59.99954 * 1 2 3 34 34 H 1.08993 * 109.46482 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47126 * 240.00311 * 2 1 3 36 36 H 1.08997 * 109.47070 * 119.99565 * 2 1 3 37 37 H 1.07992 * 119.99997 * 359.97438 * 4 3 2 38 38 H 1.07998 * 120.00027 * 179.97438 * 5 4 3 39 39 H 1.07995 * 119.99428 * 180.02562 * 6 5 4 40 40 H 1.07992 * 119.99745 * 180.21413 * 7 6 5 41 41 H 1.09000 * 117.49966 * 145.01815 * 11 9 8 42 42 H 1.09004 * 117.51866 * 359.97438 * 11 9 8 43 43 H 1.09000 * 110.36877 * 274.67608 * 17 16 14 44 44 H 1.09006 * 110.36810 * 36.89198 * 17 16 14 45 45 H 1.08999 * 111.00560 * 155.07857 * 18 17 16 46 46 H 1.09000 * 111.00697 * 278.90118 * 18 17 16 47 47 H 1.08997 * 110.72400 * 206.13366 * 19 18 17 48 48 H 1.09000 * 110.72061 * 82.85984 * 19 18 17 49 49 H 1.09002 * 109.47092 * 304.50061 * 22 20 16 50 50 H 1.09000 * 109.46993 * 64.49651 * 22 20 16 51 51 H 0.96996 * 119.99779 * 5.06417 * 23 22 20 52 52 H 0.97001 * 119.99861 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3616 2.0377 -1.1928 5 6 2.8227 3.3406 -1.1928 6 6 2.9540 4.0275 0.0000 7 6 2.6212 3.4121 1.1921 8 6 2.1643 2.1072 1.1924 9 6 1.8054 1.4349 2.4925 10 1 1.0735 0.6305 2.4196 11 6 1.7785 2.3024 3.7525 12 6 2.9090 1.2931 3.5426 13 1 3.8948 1.6859 3.2935 14 6 2.9010 0.0516 4.3971 15 8 2.0406 -0.7882 4.2383 16 7 3.8499 -0.1252 5.3377 17 6 4.8856 0.8562 5.7083 18 6 5.2843 0.4837 7.1582 19 6 5.2120 -1.0655 7.1127 20 6 4.0231 -1.3284 6.1645 21 1 3.1184 -1.5138 6.7433 22 6 4.3258 -2.5339 5.2723 23 7 4.3904 -3.7453 6.0934 24 6 4.7525 -4.9381 5.5267 25 1 4.9909 -4.9857 4.4743 26 6 4.8133 -6.0861 6.3046 27 7 4.5222 -6.0283 7.5870 28 14 5.3065 -7.7135 5.5314 29 1 5.5806 -7.5117 4.0859 30 1 6.5288 -8.2285 6.1993 31 1 4.2030 -8.6936 5.6943 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3632 -1.0276 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5137 0.8900 37 1 2.2592 1.5011 -2.1244 38 1 3.0803 3.8223 -2.1244 39 1 3.3139 5.0457 -0.0001 40 1 2.7204 3.9498 2.1233 41 1 1.0290 2.0687 4.5086 42 1 2.0208 3.3594 3.6416 43 1 5.7456 0.7694 5.0443 44 1 4.4802 1.8675 5.6726 45 1 6.2958 0.8211 7.3842 46 1 4.5703 0.8878 7.8758 47 1 5.0116 -1.4715 8.1042 48 1 6.1318 -1.4826 6.7027 49 1 3.5375 -2.6415 4.5272 50 1 5.2818 -2.3836 4.7706 51 1 4.1766 -3.7025 7.0386 52 1 4.5643 -6.8306 8.1305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482061504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:56 Heat of formation + Delta-G solvation = 19.824823 kcal Electronic energy + Delta-G solvation = -29844.883431 eV Core-core repulsion = 26002.778282 eV Total energy + Delta-G solvation = -3842.105149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.60474 -39.68647 -37.80431 -36.13306 -34.46568 -34.35131 -31.69622 -31.27493 -30.71655 -29.51226 -28.72531 -25.32896 -24.80417 -24.14400 -23.92532 -22.58325 -21.93914 -21.25009 -20.62768 -20.03883 -18.76161 -17.61310 -16.92792 -16.54368 -16.36977 -15.84485 -15.25766 -14.98952 -14.66665 -14.44622 -14.06208 -13.96283 -13.71160 -13.62041 -13.43204 -13.35960 -13.22879 -12.86837 -12.76261 -12.53735 -12.45881 -12.09938 -11.97442 -11.92489 -11.57473 -11.46765 -11.17998 -11.03626 -10.96536 -10.89814 -10.82114 -10.70624 -10.59426 -10.49738 -10.40764 -9.99395 -9.75627 -9.58595 -8.99053 -8.81413 -8.66962 -8.40577 -6.86079 -5.71728 -2.99711 1.07516 1.17452 2.60188 3.03478 3.43471 3.46990 3.52789 3.55142 3.88120 4.26410 4.49941 4.60204 4.61524 4.63614 4.66753 4.67895 4.78361 4.80686 4.97930 5.02340 5.04573 5.08464 5.25310 5.30949 5.32389 5.41771 5.43056 5.44279 5.49673 5.60794 5.63474 5.69890 5.73174 5.80737 5.83225 5.85581 5.91204 5.95760 5.99867 6.08695 6.11182 6.15377 6.21985 6.28935 6.32755 6.44801 6.51286 6.59080 6.79040 6.84596 7.01947 7.71346 7.76476 8.35931 8.47469 9.58266 10.15039 10.50823 11.51454 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002678 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.915732 B =10451.479763 C =12006.601561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.086 4.086 10 H 0.131 0.869 11 C -0.147 4.147 12 C -0.170 4.170 13 H 0.122 0.878 14 C 0.555 3.445 15 O -0.528 6.528 16 N -0.608 5.608 17 C 0.101 3.899 18 C -0.134 4.134 19 C -0.120 4.120 20 C 0.131 3.869 21 H 0.076 0.924 22 C 0.148 3.852 23 N -0.728 5.728 24 C -0.233 4.233 25 H 0.070 0.930 26 C -0.015 4.015 27 N -0.935 5.935 28 Si 0.907 3.093 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.292 1.292 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.029 0.971 50 H 0.020 0.980 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 25.385 -11.668 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.066 4.066 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.104 4.104 10 H 0.148 0.852 11 C -0.184 4.184 12 C -0.191 4.191 13 H 0.140 0.860 14 C 0.343 3.657 15 O -0.404 6.404 16 N -0.343 5.343 17 C -0.022 4.022 18 C -0.172 4.172 19 C -0.158 4.158 20 C 0.028 3.972 21 H 0.094 0.906 22 C 0.019 3.981 23 N -0.372 5.372 24 C -0.364 4.364 25 H 0.088 0.912 26 C -0.211 4.211 27 N -0.584 5.584 28 Si 0.738 3.262 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.219 1.219 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.047 0.953 50 H 0.038 0.962 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.254 24.809 -11.943 27.726 hybrid contribution 0.423 -0.866 -0.091 0.968 sum -2.831 23.943 -12.035 26.946 Atomic orbital electron populations 1.21733 0.94549 1.02070 1.01904 1.20628 0.96408 0.92405 1.03572 1.19771 0.98196 0.96295 0.92335 1.21042 0.99866 0.95163 0.97445 1.21125 0.99994 0.94831 0.98048 1.21071 1.00799 0.99881 0.92521 1.21032 0.99709 0.94485 0.98307 1.18981 0.99479 0.93694 0.92803 1.21144 1.00499 1.01711 0.87049 0.85158 1.23124 0.99343 0.96264 0.99664 1.22324 0.96729 0.97843 1.02170 0.85967 1.19179 0.80463 0.86768 0.79325 1.90743 1.36421 1.44792 1.68454 1.48418 1.30628 1.17549 1.37661 1.22301 0.91100 0.92445 0.96355 1.22798 1.01997 0.96984 0.95459 1.22657 0.98596 0.94354 1.00159 1.21815 0.98603 0.85021 0.91793 0.90639 1.20930 0.97944 0.85674 0.93527 1.42201 1.82880 1.03248 1.08914 1.19255 1.37410 0.85920 0.93804 0.91249 1.24721 1.02760 0.97862 0.95757 1.69672 1.55802 1.27967 1.04932 0.86107 0.77679 0.84189 0.78213 1.20581 1.21911 1.21867 0.92383 0.92849 0.92092 0.91073 0.89989 0.86074 0.86235 0.86196 0.85934 0.87735 0.87558 0.91486 0.90835 0.90013 0.90830 0.89786 0.89901 0.95284 0.96201 0.78330 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.74 37.16 0.36 -1.04 16 2 C -0.09 -0.98 5.38 -27.88 -0.15 -1.13 16 3 C -0.07 -0.70 5.13 -104.62 -0.54 -1.23 16 4 C -0.12 -1.09 9.68 -39.58 -0.38 -1.47 16 5 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 6 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 7 C -0.12 -1.05 9.30 -39.58 -0.37 -1.41 16 8 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 9 C -0.09 -0.96 4.66 -91.77 -0.43 -1.39 16 10 H 0.13 1.69 5.47 -51.93 -0.28 1.41 16 11 C -0.15 -1.37 9.56 -26.73 -0.26 -1.62 16 12 C -0.17 -1.95 4.91 -91.77 -0.45 -2.40 16 13 H 0.12 1.23 7.88 -51.93 -0.41 0.82 16 14 C 0.55 8.77 7.36 -10.98 -0.08 8.69 16 15 O -0.53 -10.58 15.44 5.56 0.09 -10.50 16 16 N -0.61 -9.10 3.06 -163.02 -0.50 -9.60 16 17 C 0.10 1.09 6.48 -2.53 -0.02 1.07 16 18 C -0.13 -1.42 7.09 -24.58 -0.17 -1.59 16 19 C -0.12 -1.77 6.20 -24.90 -0.15 -1.92 16 20 C 0.13 2.32 2.90 -66.95 -0.19 2.13 16 21 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 22 C 0.15 3.29 5.65 -4.04 -0.02 3.27 16 23 N -0.73 -19.30 5.40 -59.91 -0.32 -19.63 16 24 C -0.23 -6.79 9.99 -15.06 -0.15 -6.94 16 25 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 26 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 27 N -0.93 -28.82 13.06 55.49 0.72 -28.09 16 28 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 31 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 32 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.08 1.03 6.94 -51.93 -0.36 0.67 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.86 6.02 -52.49 -0.32 0.55 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.11 0.73 6.17 -51.93 -0.32 0.41 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.32 7.78 -51.93 -0.40 0.92 16 49 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 50 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 51 H 0.38 10.48 7.59 -40.82 -0.31 10.17 16 52 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -34.30 414.32 -11.85 -46.14 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.57 Total: 8.88 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -4.48 Total: -11.51 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.10 Total: -57.32 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.30 -11.85 -46.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482061504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.968 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds