Wall clock time and date at job start Wed Apr 1 2020 01:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 120.00006 * 2 1 4 4 C 1.38206 * 119.99982 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00001 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00033 * 180.02562 * 5 4 3 7 7 H 1.09000 * 115.55924 * 154.29563 * 6 5 4 8 8 C 1.53002 * 117.49668 * 8.61157 * 6 5 4 9 9 C 1.53000 * 60.02940 * 252.51929 * 8 6 5 10 10 H 1.09007 * 117.49605 * 107.50099 * 9 8 6 11 11 C 1.50690 * 117.50063 * 252.49714 * 9 8 6 12 12 O 1.21283 * 120.00042 * 68.61154 * 11 9 8 13 13 N 1.34777 * 120.00347 * 248.60878 * 11 9 8 14 14 C 1.46501 * 120.00401 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.47245 * 34.99921 * 14 13 11 16 16 C 1.53002 * 109.47544 * 155.00208 * 14 13 11 17 17 N 1.46504 * 109.46617 * 305.00286 * 16 14 13 18 18 C 1.36936 * 119.99232 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00390 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99407 * 179.97438 * 18 17 16 21 21 N 1.31616 * 120.00540 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00070 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46786 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47219 * 119.99976 * 22 20 18 25 25 H 1.48493 * 109.47412 * 240.00628 * 22 20 18 26 26 C 1.53006 * 109.47103 * 275.00465 * 14 13 11 27 27 C 1.52999 * 117.50033 * 128.62182 * 26 14 13 28 28 C 1.52992 * 117.50026 * 59.99664 * 26 14 13 29 29 C 1.38218 * 120.00069 * 0.27499 * 5 4 3 30 30 C 1.38206 * 120.00034 * 179.97438 * 2 1 3 31 31 C 1.50701 * 119.99852 * 0.02562 * 30 2 1 32 32 H 1.09000 * 109.47063 * 89.99861 * 1 2 3 33 33 H 1.08993 * 109.47252 * 210.00078 * 1 2 3 34 34 H 1.09003 * 109.47417 * 330.00321 * 1 2 3 35 35 H 1.08006 * 119.99908 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.00017 * 180.02562 * 4 3 2 37 37 H 1.09002 * 117.49918 * 145.01964 * 8 6 5 38 38 H 1.09002 * 117.49754 * 0.02562 * 8 6 5 39 39 H 0.97000 * 120.00030 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.46868 * 64.99819 * 16 14 13 41 41 H 1.08999 * 109.47126 * 184.99980 * 16 14 13 42 42 H 0.96993 * 120.00339 * 359.97438 * 17 16 14 43 43 H 0.96992 * 120.00921 * 179.97438 * 21 20 18 44 44 H 1.08995 * 115.54449 * 274.32660 * 26 14 13 45 45 H 1.08997 * 117.49449 * 359.97438 * 27 26 14 46 46 H 1.08998 * 117.50225 * 145.01854 * 27 26 14 47 47 H 1.09000 * 117.50279 * 214.97959 * 28 26 14 48 48 H 1.08998 * 117.50287 * 359.97438 * 28 26 14 49 49 H 1.07995 * 120.00084 * 179.72274 * 29 5 4 50 50 H 1.08999 * 109.47196 * 90.00171 * 31 30 2 51 51 H 1.09005 * 109.47215 * 210.00139 * 31 30 2 52 52 H 1.09003 * 109.47678 * 329.99708 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0028 7 1 6.2486 -0.8858 0.4300 8 6 6.4850 1.3420 0.2059 9 6 6.4863 0.6786 -1.1728 10 1 5.8618 1.1250 -1.9467 11 6 7.7796 0.0711 -1.6514 12 8 8.2222 -0.9189 -1.1083 13 7 8.4446 0.6279 -2.6830 14 6 9.7022 0.0376 -3.1480 15 1 9.6527 -1.0468 -3.0502 16 6 9.9275 0.4076 -4.6154 17 7 8.7634 0.0000 -5.4060 18 6 8.7376 0.2308 -6.7555 19 1 9.5754 0.7129 -7.2371 20 6 7.6348 -0.1559 -7.5047 21 7 6.6139 -0.7438 -6.9180 22 14 7.5997 0.1582 -9.3458 23 1 8.8599 0.8272 -9.7579 24 1 7.4673 -1.1336 -10.0659 25 1 6.4445 1.0305 -9.6772 26 6 10.8601 0.5734 -2.3034 27 6 11.8142 -0.4491 -1.6829 28 6 10.8196 0.3047 -0.7978 29 6 3.5806 -1.1970 -0.0036 30 6 2.1980 -1.1969 0.0005 31 6 1.4445 -2.5020 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3634 0.8900 0.5138 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1327 0.0010 37 1 7.4196 1.3390 0.7668 38 1 5.8596 2.2247 0.3392 39 1 8.0909 1.4199 -3.1172 40 1 10.0657 1.4854 -4.7013 41 1 10.8159 -0.1034 -4.9867 42 1 8.0111 -0.4333 -4.9736 43 1 5.8431 -1.0137 -7.4413 44 1 11.2838 1.5216 -2.6342 45 1 11.6168 -1.5035 -1.8761 46 1 12.8660 -0.1738 -1.6055 47 1 11.2171 1.0759 -0.1380 48 1 9.9680 -0.2534 -0.4088 49 1 4.1206 -2.1322 -0.0073 50 1 1.2633 -2.8169 -1.0271 51 1 2.0334 -3.2616 0.5148 52 1 0.4919 -2.3716 0.5140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483593214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:50 Heat of formation + Delta-G solvation = 38.321273 kcal Electronic energy + Delta-G solvation = -29389.168958 eV Core-core repulsion = 25547.865876 eV Total energy + Delta-G solvation = -3841.303082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.34576 -39.53877 -37.70143 -36.25169 -34.98699 -33.34354 -32.89967 -32.19189 -31.07782 -28.27474 -27.85815 -26.53401 -24.45344 -23.61650 -22.84271 -22.16105 -22.06863 -21.48528 -20.23333 -19.92349 -19.33612 -17.51332 -17.07533 -16.23847 -16.09197 -15.70027 -15.18546 -14.98253 -14.84642 -14.42540 -14.40294 -14.00752 -13.97626 -13.36070 -13.22660 -13.14283 -12.94482 -12.86219 -12.79780 -12.38097 -12.22989 -12.11251 -12.05266 -11.88229 -11.65113 -11.25163 -11.15204 -11.02008 -10.94496 -10.90386 -10.83114 -10.53900 -10.42216 -10.16222 -10.08906 -9.92411 -9.69648 -9.47345 -8.92702 -8.76805 -8.58955 -8.36428 -6.96790 -5.78599 -3.08634 1.22040 1.35251 2.75896 3.33617 3.41683 3.47331 3.49607 3.59395 4.02508 4.15064 4.52382 4.55240 4.66867 4.76649 4.78601 4.87056 4.91243 4.93035 5.06251 5.08346 5.18539 5.23655 5.27643 5.32551 5.35567 5.46054 5.51233 5.54963 5.56073 5.57831 5.69645 5.70963 5.74051 5.79436 5.85650 5.91998 5.94423 5.99385 6.09098 6.10251 6.13771 6.23666 6.37616 6.40748 6.50728 6.52807 6.57389 6.61893 6.69122 6.97083 6.97837 7.67936 7.92058 8.38871 8.58875 9.50882 10.06616 10.42145 11.43651 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007532 B = 0.003128 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3716.777771 B = 8949.357560 C =11814.184705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.050 4.050 6 C -0.082 4.082 7 H 0.125 0.875 8 C -0.146 4.146 9 C -0.173 4.173 10 H 0.126 0.874 11 C 0.548 3.452 12 O -0.548 6.548 13 N -0.701 5.701 14 C 0.169 3.831 15 H 0.087 0.913 16 C 0.148 3.852 17 N -0.732 5.732 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.162 4.162 27 C -0.171 4.171 28 C -0.185 4.185 29 C -0.104 4.104 30 C -0.085 4.085 31 C -0.118 4.118 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.405 0.595 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.124 0.876 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 4.135 18.837 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.051 4.051 6 C -0.101 4.101 7 H 0.143 0.857 8 C -0.183 4.183 9 C -0.194 4.194 10 H 0.144 0.856 11 C 0.335 3.665 12 O -0.427 6.427 13 N -0.350 5.350 14 C 0.064 3.936 15 H 0.105 0.895 16 C 0.020 3.980 17 N -0.376 5.376 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.182 4.182 27 C -0.209 4.209 28 C -0.222 4.222 29 C -0.122 4.122 30 C -0.085 4.085 31 C -0.174 4.174 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.240 0.760 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.135 0.865 49 H 0.141 0.859 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.688 3.479 19.016 20.151 hybrid contribution -0.355 0.504 -1.388 1.518 sum -6.042 3.983 17.628 19.056 Atomic orbital electron populations 1.20843 0.91492 1.02568 1.02351 1.19736 0.95872 0.92730 1.01042 1.20944 0.94025 0.97351 1.00973 1.21002 0.94112 0.97641 1.01124 1.19083 0.92938 0.93278 0.99752 1.21035 0.90370 0.97989 1.00686 0.85687 1.23094 1.02700 0.96240 0.96315 1.22373 0.97790 1.05715 0.93491 0.85600 1.19447 0.84096 0.83318 0.79649 1.90589 1.68701 1.25942 1.57477 1.45862 1.23810 1.31833 1.33490 1.20801 0.81085 0.98404 0.93320 0.89492 1.20918 0.92242 0.97461 0.87378 1.42356 1.17544 1.72412 1.05337 1.19253 1.01452 1.32596 0.84031 0.91086 1.24749 0.96713 1.01270 0.98050 1.69674 1.07444 1.45978 1.34716 0.86128 0.77238 0.77356 0.85518 1.20549 1.21856 1.21875 1.22646 0.99831 1.00402 0.95283 1.22882 0.95609 0.97781 1.04637 1.23243 1.03059 1.03271 0.92630 1.20865 0.93294 0.97788 1.00259 1.19722 0.93559 0.94919 1.00290 1.20863 0.99902 0.94083 1.02552 0.91175 0.91285 0.91817 0.86178 0.85935 0.87907 0.87662 0.76036 0.95763 0.94735 0.77986 0.93532 0.87934 0.88780 0.89249 0.89968 0.86518 0.85851 0.90986 0.91591 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.01 0.35 -0.59 16 2 C -0.09 -1.01 5.88 -104.63 -0.62 -1.62 16 3 C -0.11 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.36 9.30 -39.59 -0.37 -1.73 16 5 C -0.05 -0.63 5.61 -104.62 -0.59 -1.22 16 6 C -0.08 -1.04 5.56 -91.73 -0.51 -1.55 16 7 H 0.13 1.69 7.67 -51.93 -0.40 1.30 16 8 C -0.15 -1.55 9.56 -26.73 -0.26 -1.81 16 9 C -0.17 -2.32 5.82 -91.74 -0.53 -2.85 16 10 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 11 C 0.55 8.91 6.94 -10.99 -0.08 8.83 16 12 O -0.55 -10.20 13.29 5.56 0.07 -10.12 16 13 N -0.70 -11.34 4.50 -53.81 -0.24 -11.58 16 14 C 0.17 2.88 2.43 -67.93 -0.17 2.71 16 15 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 16 C 0.15 2.91 5.80 -4.04 -0.02 2.89 16 17 N -0.73 -18.18 5.43 -59.90 -0.33 -18.51 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C -0.16 -2.32 5.36 -90.62 -0.49 -2.81 16 27 C -0.17 -2.29 10.18 -26.73 -0.27 -2.56 16 28 C -0.19 -2.55 9.73 -26.74 -0.26 -2.81 16 29 C -0.10 -1.30 9.39 -39.58 -0.37 -1.67 16 30 C -0.08 -0.97 5.88 -104.63 -0.62 -1.58 16 31 C -0.12 -1.05 9.60 36.01 0.35 -0.71 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 34 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.12 1.16 6.02 -52.49 -0.32 0.84 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.11 0.91 6.18 -51.93 -0.32 0.59 16 39 H 0.40 6.29 8.60 -40.82 -0.35 5.94 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.39 10.28 7.33 -40.82 -0.30 9.98 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 45 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 46 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.12 1.85 5.02 -51.93 -0.26 1.59 16 49 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 52 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 LS Contribution 418.78 15.07 6.31 6.31 Total: -1.00 -31.91 418.78 -11.96 -43.87 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -8.40 Total: 18.05 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -5.08 Total: -17.95 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.16 Total: -57.42 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.91 -11.96 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483593214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.192 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds