Wall clock time and date at job start Wed Apr 1 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52024 * 2 1 4 4 N 1.46504 * 109.47324 * 299.91850 * 3 2 1 5 5 C 1.34776 * 120.00020 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00207 * 180.02562 * 5 4 3 8 8 C 1.54353 * 110.81537 * 295.89047 * 7 5 4 9 9 C 1.51675 * 105.01860 * 215.56781 * 8 7 5 10 10 C 1.38499 * 130.31073 * 197.10006 * 9 8 7 11 11 C 1.38109 * 120.21516 * 179.80016 * 10 9 8 12 12 C 1.38259 * 119.93200 * 0.02562 * 11 10 9 13 13 C 1.38102 * 119.93650 * 359.97438 * 12 11 10 14 14 C 1.38218 * 109.83711 * 16.91898 * 9 8 7 15 15 C 1.51361 * 109.76011 * 0.15899 * 14 9 8 16 16 C 1.53350 * 109.47423 * 120.29436 * 2 1 3 17 17 C 1.53044 * 109.60707 * 58.55238 * 16 2 1 18 18 C 1.53196 * 109.31376 * 61.37177 * 17 16 2 19 19 N 1.46928 * 108.77379 * 305.36656 * 18 17 16 20 20 C 1.36936 * 120.62867 * 233.63089 * 19 18 17 21 21 H 1.08002 * 120.00030 * 151.82096 * 20 19 18 22 22 C 1.38813 * 120.00044 * 331.81337 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08058 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.07948 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46924 * 118.73914 * 53.60715 * 19 18 17 29 29 H 1.09002 * 109.46902 * 180.08351 * 1 2 3 30 30 H 1.09002 * 109.47093 * 300.07627 * 1 2 3 31 31 H 1.08992 * 109.47392 * 60.08359 * 1 2 3 32 32 H 1.09004 * 109.47145 * 59.91989 * 3 2 1 33 33 H 1.08999 * 109.47335 * 179.97438 * 3 2 1 34 34 H 0.96996 * 119.99697 * 0.02562 * 4 3 2 35 35 H 1.08999 * 110.73204 * 59.29201 * 7 5 4 36 36 H 1.08997 * 110.30563 * 334.34707 * 8 7 5 37 37 H 1.09003 * 110.30336 * 96.50487 * 8 7 5 38 38 H 1.07991 * 119.89086 * 359.80544 * 10 9 8 39 39 H 1.07999 * 120.02958 * 180.02562 * 11 10 9 40 40 H 1.08001 * 120.02861 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.88810 * 180.02562 * 13 12 11 42 42 H 1.09002 * 110.30397 * 223.88405 * 15 14 9 43 43 H 1.09003 * 110.38231 * 101.77785 * 15 14 9 44 44 H 1.08995 * 109.41840 * 298.51416 * 16 2 1 45 45 H 1.08996 * 109.43236 * 178.59691 * 16 2 1 46 46 H 1.09000 * 109.49626 * 301.42206 * 17 16 2 47 47 H 1.08996 * 109.49701 * 181.31987 * 17 16 2 48 48 H 1.08997 * 109.59086 * 185.58003 * 18 17 16 49 49 H 1.09001 * 109.70482 * 65.22018 * 18 17 16 50 50 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58845 * 66.18040 * 28 19 18 52 52 H 1.09003 * 109.58558 * 186.46077 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5551 2.1325 -1.1972 5 6 1.8826 3.4223 -1.4108 6 8 2.5793 4.0115 -0.6118 7 6 1.3821 4.1328 -2.6420 8 6 1.9621 3.4904 -3.9199 9 6 2.1820 4.6469 -4.8763 10 6 2.3780 4.6510 -6.2473 11 6 2.5559 5.8438 -6.9204 12 6 2.5389 7.0381 -6.2241 13 6 2.3436 7.0360 -4.8569 14 6 2.1646 5.8409 -4.1802 15 6 1.9360 5.5719 -2.7083 16 6 2.0413 -0.7293 1.2483 17 6 1.5034 -2.1620 1.2625 18 6 2.0141 -2.9072 0.0253 19 7 1.6514 -2.1383 -1.1731 20 6 0.9628 -2.7287 -2.1989 21 1 0.3185 -2.1340 -2.8295 22 6 1.0929 -4.0915 -2.4284 23 7 2.1013 -4.7541 -1.9026 24 14 -0.1633 -4.9851 -3.4835 25 1 0.2725 -4.9566 -4.9028 26 1 -0.2785 -6.3942 -3.0293 27 1 -1.4823 -4.3148 -3.3570 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.6772 1.9566 0.8893 33 1 3.1313 1.4411 0.0005 34 1 0.9976 1.6614 -1.8360 35 1 0.2924 4.1354 -2.6698 36 1 2.9091 2.9978 -3.6994 37 1 1.2529 2.7772 -4.3402 38 1 2.3918 3.7185 -6.7918 39 1 2.7081 5.8435 -7.9896 40 1 2.6775 7.9718 -6.7489 41 1 2.3301 7.9694 -4.3138 42 1 1.2090 6.2761 -2.3036 43 1 2.8751 5.6414 -2.1594 44 1 1.6994 -0.2043 2.1402 45 1 3.1310 -0.7507 1.2350 46 1 0.4136 -2.1416 1.2508 47 1 1.8486 -2.6714 2.1622 48 1 1.5554 -3.8949 -0.0217 49 1 3.0979 -3.0099 0.0794 50 1 2.1919 -5.7065 -2.0627 51 1 3.1275 -0.6462 -1.2980 52 1 1.6027 -0.2714 -2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484170481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:32 Heat of formation + Delta-G solvation = -6.208439 kcal Electronic energy + Delta-G solvation = -30201.682295 eV Core-core repulsion = 26358.448260 eV Total energy + Delta-G solvation = -3843.234036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.73264 -39.47361 -38.35173 -35.60551 -34.93256 -33.20913 -31.61014 -30.96746 -30.49162 -29.47988 -27.47838 -26.69417 -25.69418 -25.28842 -23.43588 -22.16914 -21.53623 -21.11245 -20.60926 -19.92797 -17.98573 -17.33199 -16.67382 -16.40041 -16.06251 -15.82993 -15.10451 -14.96188 -14.89304 -14.39223 -14.09368 -13.88760 -13.70163 -13.44100 -13.36147 -13.16198 -13.07378 -12.90323 -12.72392 -12.51843 -12.21662 -12.14002 -11.73386 -11.45078 -11.40562 -11.34486 -11.29090 -10.99927 -10.97663 -10.93612 -10.63424 -10.49081 -10.24671 -10.12091 -9.92935 -9.81280 -9.52827 -9.38000 -8.99837 -8.91936 -8.68818 -8.48679 -6.68743 -5.82188 -3.24900 1.15844 1.19966 2.64833 3.23815 3.33738 3.41582 3.42721 3.56365 4.10493 4.31865 4.44939 4.72418 4.77752 4.80698 4.86156 5.00461 5.03548 5.16693 5.23041 5.28554 5.32079 5.39634 5.41164 5.54874 5.56715 5.58800 5.64296 5.79118 5.84933 5.86178 5.92555 5.95415 5.99854 6.02478 6.12495 6.18348 6.24650 6.31412 6.34677 6.43861 6.46096 6.55373 6.57036 6.62621 6.74871 6.80151 6.80791 6.87958 6.96194 7.37850 7.58680 7.65141 7.75498 8.26515 8.41292 9.17658 9.81317 10.38391 11.26019 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.002748 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.137809 B =10185.175061 C =12015.493430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C 0.133 3.867 4 N -0.718 5.718 5 C 0.521 3.479 6 O -0.545 6.545 7 C -0.111 4.111 8 C -0.073 4.073 9 C -0.094 4.094 10 C -0.104 4.104 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.093 4.093 15 C -0.066 4.066 16 C -0.095 4.095 17 C -0.143 4.143 18 C 0.169 3.831 19 N -0.587 5.587 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.161 3.839 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.404 0.596 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.017 0.983 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 19.333 -2.960 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C 0.009 3.991 4 N -0.370 5.370 5 C 0.306 3.694 6 O -0.423 6.423 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.094 4.094 10 C -0.122 4.122 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.127 4.127 14 C -0.093 4.093 15 C -0.103 4.103 16 C -0.133 4.133 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.309 5.309 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.034 3.966 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.235 19.532 -2.402 19.718 hybrid contribution -0.817 -0.789 -0.929 1.467 sum -2.052 18.743 -3.331 19.147 Atomic orbital electron populations 1.21763 0.94273 1.03087 0.99555 1.21389 0.96534 0.92296 0.99232 1.21445 0.98950 0.92026 0.86696 1.46101 1.53312 1.11708 1.25875 1.20263 0.80193 0.81944 0.86953 1.90680 1.38218 1.66250 1.47111 1.21990 1.02083 0.96011 0.93143 1.21074 1.02276 0.95963 0.91754 1.20579 0.99937 0.95256 0.93668 1.20670 1.00145 0.98436 0.92992 1.21041 1.00851 0.92360 0.99832 1.21032 1.00735 0.98127 0.94049 1.20608 1.00839 0.97019 0.94200 1.20610 0.99454 0.93419 0.95798 1.20918 1.03004 0.94346 0.92081 1.21407 0.99948 0.96521 0.95394 1.22222 1.00796 0.95227 1.00003 1.20789 0.96652 0.95566 0.82638 1.43970 1.65137 1.05184 1.16603 1.19108 1.18589 0.91744 1.08697 0.91839 1.25035 0.97115 0.98185 0.99208 1.70033 1.28297 1.08325 1.47864 0.86349 0.81476 0.79153 0.80091 1.21440 1.21606 1.20500 1.20866 0.96010 0.86496 0.93270 0.90486 0.94147 0.93882 0.91954 0.91704 0.76051 0.87461 0.89376 0.89471 0.86006 0.85927 0.85996 0.86244 0.90308 0.88275 0.93462 0.92579 0.92292 0.93330 0.89615 0.96522 0.93636 0.96498 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.82 37.16 0.29 -1.67 16 2 C -0.09 -1.44 0.53 -154.23 -0.08 -1.52 16 3 C 0.13 1.88 4.58 -4.04 -0.02 1.87 16 4 N -0.72 -9.16 4.98 -60.29 -0.30 -9.46 16 5 C 0.52 6.86 7.05 -10.99 -0.08 6.78 16 6 O -0.54 -9.04 15.53 5.55 0.09 -8.95 16 7 C -0.11 -1.15 3.46 -90.36 -0.31 -1.46 16 8 C -0.07 -0.75 6.32 -26.69 -0.17 -0.92 16 9 C -0.09 -1.01 6.15 -104.05 -0.64 -1.65 16 10 C -0.10 -1.04 10.04 -39.53 -0.40 -1.43 16 11 C -0.12 -1.10 10.05 -39.62 -0.40 -1.50 16 12 C -0.12 -1.06 10.05 -39.62 -0.40 -1.46 16 13 C -0.11 -1.03 10.04 -39.53 -0.40 -1.43 16 14 C -0.09 -0.99 6.14 -104.21 -0.64 -1.63 16 15 C -0.07 -0.70 6.09 -26.86 -0.16 -0.86 16 16 C -0.09 -1.51 4.73 -26.53 -0.13 -1.64 16 17 C -0.14 -2.60 5.74 -26.61 -0.15 -2.75 16 18 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 19 N -0.59 -13.68 2.44 -172.32 -0.42 -14.10 16 20 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 21 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16 22 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -25.44 11.20 55.49 0.62 -24.82 16 24 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.16 3.08 4.92 -3.71 -0.02 3.06 16 29 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.60 6.87 -51.93 -0.36 0.24 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.40 4.71 6.22 -40.82 -0.25 4.45 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.98 7.89 -51.93 -0.41 0.57 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.21 7.02 -51.93 -0.36 0.84 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.05 0.90 6.83 -51.93 -0.35 0.54 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -30.19 399.74 -11.55 -41.74 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.58 Total: 4.64 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.95 Total: -11.01 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.10 Total: -48.38 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.19 -11.55 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484170481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.533 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds