Wall clock time and date at job start Wed Apr 1 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.52024 * 2 1 4 4 N 1.46504 * 109.47324 * 299.91850 * 3 2 1 5 5 C 1.34776 * 120.00020 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00207 * 180.02562 * 5 4 3 8 8 C 1.54353 * 110.81537 * 295.89047 * 7 5 4 9 9 C 1.51675 * 105.01860 * 215.56781 * 8 7 5 10 10 C 1.38499 * 130.31073 * 197.10006 * 9 8 7 11 11 C 1.38109 * 120.21516 * 179.80016 * 10 9 8 12 12 C 1.38259 * 119.93200 * 0.02562 * 11 10 9 13 13 C 1.38102 * 119.93650 * 359.97438 * 12 11 10 14 14 C 1.38218 * 109.83711 * 16.91898 * 9 8 7 15 15 C 1.51361 * 109.76011 * 0.15899 * 14 9 8 16 16 C 1.53350 * 109.47423 * 120.29436 * 2 1 3 17 17 C 1.53044 * 109.60707 * 58.55238 * 16 2 1 18 18 C 1.53196 * 109.31376 * 61.37177 * 17 16 2 19 19 N 1.46928 * 108.77379 * 305.36656 * 18 17 16 20 20 C 1.36936 * 120.62867 * 233.63089 * 19 18 17 21 21 H 1.08002 * 120.00030 * 151.82096 * 20 19 18 22 22 C 1.38813 * 120.00044 * 331.81337 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08058 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.07948 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46924 * 118.73914 * 53.60715 * 19 18 17 29 29 H 1.09002 * 109.46902 * 180.08351 * 1 2 3 30 30 H 1.09002 * 109.47093 * 300.07627 * 1 2 3 31 31 H 1.08992 * 109.47392 * 60.08359 * 1 2 3 32 32 H 1.09004 * 109.47145 * 59.91989 * 3 2 1 33 33 H 1.08999 * 109.47335 * 179.97438 * 3 2 1 34 34 H 0.96996 * 119.99697 * 0.02562 * 4 3 2 35 35 H 1.08999 * 110.73204 * 59.29201 * 7 5 4 36 36 H 1.08997 * 110.30563 * 334.34707 * 8 7 5 37 37 H 1.09003 * 110.30336 * 96.50487 * 8 7 5 38 38 H 1.07991 * 119.89086 * 359.80544 * 10 9 8 39 39 H 1.07999 * 120.02958 * 180.02562 * 11 10 9 40 40 H 1.08001 * 120.02861 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.88810 * 180.02562 * 13 12 11 42 42 H 1.09002 * 110.30397 * 223.88405 * 15 14 9 43 43 H 1.09003 * 110.38231 * 101.77785 * 15 14 9 44 44 H 1.08995 * 109.41840 * 298.51416 * 16 2 1 45 45 H 1.08996 * 109.43236 * 178.59691 * 16 2 1 46 46 H 1.09000 * 109.49626 * 301.42206 * 17 16 2 47 47 H 1.08996 * 109.49701 * 181.31987 * 17 16 2 48 48 H 1.08997 * 109.59086 * 185.58003 * 18 17 16 49 49 H 1.09001 * 109.70482 * 65.22018 * 18 17 16 50 50 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58845 * 66.18040 * 28 19 18 52 52 H 1.09003 * 109.58558 * 186.46077 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5551 2.1325 -1.1972 5 6 1.8826 3.4223 -1.4108 6 8 2.5793 4.0115 -0.6118 7 6 1.3821 4.1328 -2.6420 8 6 1.9621 3.4904 -3.9199 9 6 2.1820 4.6469 -4.8763 10 6 2.3780 4.6510 -6.2473 11 6 2.5559 5.8438 -6.9204 12 6 2.5389 7.0381 -6.2241 13 6 2.3436 7.0360 -4.8569 14 6 2.1646 5.8409 -4.1802 15 6 1.9360 5.5719 -2.7083 16 6 2.0413 -0.7293 1.2483 17 6 1.5034 -2.1620 1.2625 18 6 2.0141 -2.9072 0.0253 19 7 1.6514 -2.1383 -1.1731 20 6 0.9628 -2.7287 -2.1989 21 1 0.3185 -2.1340 -2.8295 22 6 1.0929 -4.0915 -2.4284 23 7 2.1013 -4.7541 -1.9026 24 14 -0.1633 -4.9851 -3.4835 25 1 0.2725 -4.9566 -4.9028 26 1 -0.2785 -6.3942 -3.0293 27 1 -1.4823 -4.3148 -3.3570 28 6 2.0413 -0.7238 -1.2496 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.6772 1.9566 0.8893 33 1 3.1313 1.4411 0.0005 34 1 0.9976 1.6614 -1.8360 35 1 0.2924 4.1354 -2.6698 36 1 2.9091 2.9978 -3.6994 37 1 1.2529 2.7772 -4.3402 38 1 2.3918 3.7185 -6.7918 39 1 2.7081 5.8435 -7.9896 40 1 2.6775 7.9718 -6.7489 41 1 2.3301 7.9694 -4.3138 42 1 1.2090 6.2761 -2.3036 43 1 2.8751 5.6414 -2.1594 44 1 1.6994 -0.2043 2.1402 45 1 3.1310 -0.7507 1.2350 46 1 0.4136 -2.1416 1.2508 47 1 1.8486 -2.6714 2.1622 48 1 1.5554 -3.8949 -0.0217 49 1 3.0979 -3.0099 0.0794 50 1 2.1919 -5.7065 -2.0627 51 1 3.1275 -0.6462 -1.2980 52 1 1.6027 -0.2714 -2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484170481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:31 Heat of formation + Delta-G solvation = -20.763815 kcal Electronic energy + Delta-G solvation = -30202.313464 eV Core-core repulsion = 26358.448260 eV Total energy + Delta-G solvation = -3843.865204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.63933 -40.55361 -39.63646 -36.56620 -36.25824 -34.75971 -32.55180 -32.30617 -32.20441 -30.32874 -28.25986 -27.94588 -27.27232 -26.85868 -24.42239 -23.75039 -22.49956 -22.09400 -21.78616 -20.95862 -19.39626 -18.62976 -18.22577 -17.16738 -16.98812 -16.87207 -16.76383 -16.11737 -15.82763 -15.67918 -15.36852 -15.34110 -15.11237 -14.74316 -14.35377 -14.19113 -14.11194 -13.91185 -13.80085 -13.73062 -13.61803 -13.26991 -13.08332 -12.95588 -12.70589 -12.55917 -12.28002 -12.18819 -12.15914 -12.12458 -12.09216 -11.94790 -11.73746 -11.67098 -11.43831 -11.21933 -10.97127 -10.81513 -10.48143 -10.04538 -9.71061 -9.42659 -8.62000 -7.83214 -5.27992 0.43890 0.48507 1.48026 1.50435 1.58898 1.60828 2.20558 2.53594 2.84752 3.31377 3.32200 3.48788 3.61016 3.87301 3.93920 3.98251 4.00041 4.03267 4.14094 4.18516 4.31150 4.32865 4.41890 4.48914 4.61008 4.64248 4.68827 4.73079 4.74127 4.79007 4.83736 4.85363 4.90400 4.95971 5.02625 5.07175 5.12259 5.17339 5.18644 5.23589 5.24765 5.36199 5.40539 5.50320 5.54522 5.55613 5.62868 5.65335 5.71260 5.72396 5.83026 6.12333 6.42454 6.55178 7.18731 7.22486 7.90456 8.43030 9.23106 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.002748 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.137809 B =10185.175061 C =12015.493430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C 0.142 3.858 4 N -0.713 5.713 5 C 0.523 3.477 6 O -0.580 6.580 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.127 4.127 12 C -0.124 4.124 13 C -0.118 4.118 14 C -0.109 4.109 15 C -0.063 4.063 16 C -0.094 4.094 17 C -0.131 4.131 18 C 0.174 3.826 19 N -0.601 5.601 20 C -0.251 4.251 21 H 0.071 0.929 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.962 3.038 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.267 1.267 28 C 0.160 3.840 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.411 0.589 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.051 0.949 49 H -0.012 1.012 50 H 0.247 0.753 51 H 0.000 1.000 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 21.560 -3.492 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C 0.018 3.982 4 N -0.364 5.364 5 C 0.310 3.690 6 O -0.461 6.461 7 C -0.124 4.124 8 C -0.108 4.108 9 C -0.112 4.112 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.142 4.142 13 C -0.136 4.136 14 C -0.109 4.109 15 C -0.101 4.101 16 C -0.132 4.132 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.323 5.323 20 C -0.381 4.381 21 H 0.089 0.911 22 C -0.248 4.248 23 N -0.584 5.584 24 Si 0.791 3.209 25 H -0.214 1.214 26 H -0.225 1.225 27 H -0.192 1.192 28 C 0.034 3.966 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.248 0.752 35 H 0.149 0.851 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.153 0.847 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.006 0.994 50 H 0.056 0.944 51 H 0.018 0.982 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.933 21.785 -2.943 22.178 hybrid contribution -0.225 -1.418 -0.805 1.646 sum -3.158 20.367 -3.747 20.948 Atomic orbital electron populations 1.21690 0.93234 1.01852 1.01325 1.21182 0.97124 0.92612 0.97074 1.21248 0.98242 0.91001 0.87720 1.46040 1.53152 1.11678 1.25577 1.20690 0.79330 0.81729 0.87238 1.90669 1.39813 1.67013 1.48570 1.21984 1.03302 0.95473 0.91626 1.21039 1.01873 0.96151 0.91698 1.20720 1.00835 0.95400 0.94222 1.20914 1.00383 0.99430 0.92921 1.21378 0.99985 0.92089 1.01040 1.21382 0.99720 0.99182 0.93889 1.20901 1.00493 0.97324 0.94853 1.20725 1.00417 0.94012 0.95713 1.20856 1.02298 0.94792 0.92132 1.21412 0.99665 0.95270 0.96812 1.22039 1.00772 0.96212 0.97952 1.20601 0.94694 0.94933 0.84926 1.44184 1.65133 1.06662 1.16364 1.19483 1.18068 0.91997 1.08587 0.91089 1.25764 0.98815 0.99154 1.01080 1.70197 1.30243 1.08012 1.49975 0.85359 0.79794 0.77476 0.78317 1.21405 1.22496 1.19195 1.20979 0.95117 0.84740 0.95723 0.93108 0.91969 0.92606 0.90953 0.92904 0.75221 0.85055 0.90899 0.88116 0.85154 0.83789 0.83552 0.84727 0.89118 0.90426 0.90399 0.93102 0.92052 0.91737 0.93079 0.99351 0.94378 0.98233 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 7.82 71.98 0.56 -2.86 16 2 C -0.08 -2.30 0.53 -52.00 -0.03 -2.33 16 3 C 0.14 3.77 4.58 86.38 0.40 4.17 16 4 N -0.71 -16.89 4.98 -463.06 -2.30 -19.19 16 5 C 0.52 13.11 7.05 87.66 0.62 13.73 16 6 O -0.58 -18.90 15.53 -3.05 -0.05 -18.94 16 7 C -0.10 -1.97 3.46 -10.63 -0.04 -2.01 16 8 C -0.07 -1.36 6.32 30.62 0.19 -1.16 16 9 C -0.11 -2.29 6.15 -19.50 -0.12 -2.41 16 10 C -0.12 -2.20 10.04 22.30 0.22 -1.97 16 11 C -0.13 -2.01 10.05 22.24 0.22 -1.79 16 12 C -0.12 -1.88 10.05 22.24 0.22 -1.66 16 13 C -0.12 -2.04 10.04 22.30 0.22 -1.82 16 14 C -0.11 -2.20 6.14 -19.60 -0.12 -2.32 16 15 C -0.06 -1.28 6.09 30.51 0.19 -1.10 16 16 C -0.09 -2.82 4.73 30.73 0.15 -2.68 16 17 C -0.13 -4.64 5.74 30.67 0.18 -4.46 16 18 C 0.17 8.18 5.30 86.36 0.46 8.63 16 19 N -0.60 -28.30 2.44 -699.09 -1.70 -30.01 16 20 C -0.25 -13.01 9.58 84.03 0.81 -12.21 16 21 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 22 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 23 N -0.94 -54.82 11.20 21.65 0.24 -54.58 16 24 Si 0.96 43.60 29.59 68.60 2.03 45.63 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 C 0.16 6.08 4.92 86.36 0.43 6.51 16 29 H 0.05 1.71 5.97 -2.39 -0.01 1.69 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.39 6.87 -2.39 -0.02 1.37 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 8.65 6.22 -92.71 -0.58 8.07 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 1.61 7.89 -2.39 -0.02 1.59 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.13 2.07 8.06 -2.92 -0.02 2.05 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.91 7.02 -2.39 -0.02 1.89 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 2.16 6.34 -2.39 -0.02 2.15 16 47 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.05 2.74 6.06 -2.39 -0.01 2.73 16 49 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 51 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 52 H 0.06 2.05 6.83 -2.39 -0.02 2.04 16 Total: -1.00 -66.93 399.74 3.52 -63.41 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.33 Total: 23.88 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.97 Total: -10.20 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -3.77 Total: -103.78 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.93 3.52 -63.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484170481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.646 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds