Wall clock time and date at job start Wed Apr 1 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.49206 * 2 1 4 4 N 1.46497 * 109.46959 * 59.94126 * 3 2 1 5 5 C 1.34784 * 119.99614 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00459 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99447 * 179.97438 * 5 4 3 8 8 C 1.54342 * 110.82530 * 292.96924 * 7 5 4 9 9 C 1.51369 * 105.17020 * 215.43070 * 8 7 5 10 10 C 1.38496 * 130.39084 * 197.18595 * 9 8 7 11 11 C 1.38106 * 120.21702 * 179.97438 * 10 9 8 12 12 C 1.38255 * 119.93172 * 0.02562 * 11 10 9 13 13 C 1.38100 * 119.93564 * 359.97438 * 12 11 10 14 14 C 1.38217 * 109.76384 * 17.18889 * 9 8 7 15 15 C 1.51377 * 109.75533 * 359.97438 * 14 9 8 16 16 C 1.53037 * 109.49977 * 239.94037 * 2 1 3 17 17 C 1.53046 * 109.53496 * 301.37860 * 16 2 1 18 18 C 1.53191 * 109.30918 * 298.63217 * 17 16 2 19 19 N 1.46923 * 108.77337 * 54.63839 * 18 17 16 20 20 C 1.36942 * 120.62751 * 126.39286 * 19 18 17 21 21 H 1.07998 * 120.00299 * 332.74398 * 20 19 18 22 22 C 1.38814 * 119.99872 * 152.75732 * 20 19 18 23 23 N 1.31624 * 119.99846 * 159.74775 * 22 20 19 24 24 Si 1.86796 * 119.99842 * 339.74297 * 22 20 19 25 25 H 1.48501 * 109.47216 * 94.92244 * 24 22 20 26 26 H 1.48505 * 109.47022 * 214.91632 * 24 22 20 27 27 H 1.48500 * 109.47384 * 334.91488 * 24 22 20 28 28 C 1.46917 * 118.74108 * 306.38819 * 19 18 17 29 29 H 1.08997 * 109.47439 * 60.00200 * 1 2 3 30 30 H 1.09002 * 109.46425 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47414 * 299.99526 * 1 2 3 32 32 H 1.08991 * 109.47495 * 299.93049 * 3 2 1 33 33 H 1.09003 * 109.46709 * 179.97438 * 3 2 1 34 34 H 0.96995 * 120.00363 * 359.97438 * 4 3 2 35 35 H 1.09001 * 110.73471 * 56.59533 * 7 5 4 36 36 H 1.09003 * 110.30429 * 334.35167 * 8 7 5 37 37 H 1.09001 * 110.30650 * 96.50564 * 8 7 5 38 38 H 1.08004 * 119.89639 * 0.02562 * 10 9 8 39 39 H 1.08004 * 120.03400 * 180.02562 * 11 10 9 40 40 H 1.08003 * 120.02637 * 180.02562 * 12 11 10 41 41 H 1.08000 * 119.88980 * 180.02562 * 13 12 11 42 42 H 1.09000 * 110.30612 * 223.88934 * 15 14 9 43 43 H 1.08994 * 110.30085 * 101.73357 * 15 14 9 44 44 H 1.09004 * 109.46201 * 61.39777 * 16 2 1 45 45 H 1.09001 * 109.46226 * 181.35725 * 16 2 1 46 46 H 1.08995 * 109.49624 * 58.58643 * 17 16 2 47 47 H 1.09007 * 109.49479 * 178.68463 * 17 16 2 48 48 H 1.09007 * 109.58069 * 174.42340 * 18 17 16 49 49 H 1.08991 * 109.58960 * 294.84516 * 18 17 16 50 50 H 0.96999 * 119.99648 * 179.97438 * 23 22 20 51 51 H 1.09009 * 109.58375 * 293.82003 * 28 19 18 52 52 H 1.08999 * 109.58892 * 173.39811 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 7 1.5513 2.1335 1.1954 5 6 1.8776 3.4237 1.4088 6 8 2.5766 4.0123 0.6115 7 6 1.3738 4.1348 2.6383 8 6 -0.1587 4.3089 2.5822 9 6 -0.4292 5.6486 3.2329 10 6 -1.6036 6.1789 3.7406 11 6 -1.6120 7.4427 4.2973 12 6 -0.4447 8.1820 4.3479 13 6 0.7273 7.6549 3.8422 14 6 0.7376 6.3877 3.2835 15 6 1.8724 5.5951 2.6708 16 6 2.0408 -0.7226 -1.2486 17 6 1.5037 -2.1556 -1.2663 18 6 2.0155 -2.9037 -0.0313 19 7 1.6530 -2.1381 1.1692 20 6 0.9656 -2.7319 2.1941 21 1 0.3154 -3.5706 1.9937 22 6 1.1043 -2.2554 3.4905 23 7 0.1870 -2.5292 4.3939 24 14 2.5927 -1.2259 3.9529 25 1 2.2536 0.2151 3.8360 26 1 2.9891 -1.5291 5.3516 27 1 3.7188 -1.5452 3.0390 28 6 2.0420 -0.7237 1.2493 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6785 1.9560 -0.8905 33 1 3.1306 1.4419 0.0005 34 1 0.9926 1.6627 1.8334 35 1 1.6736 3.6034 3.5415 36 1 -0.5010 4.3152 1.5473 37 1 -0.6506 3.5116 3.1393 38 1 -2.5158 5.6019 3.7018 39 1 -2.5294 7.8532 4.6927 40 1 -0.4494 9.1704 4.7832 41 1 1.6388 8.2328 3.8825 42 1 2.7670 5.6762 3.2881 43 1 2.0765 5.9469 1.6596 44 1 1.6983 -0.1954 -2.1390 45 1 3.1306 -0.7434 -1.2358 46 1 0.4140 -2.1358 -1.2540 47 1 1.8488 -2.6624 -2.1675 48 1 1.5574 -3.8918 0.0132 49 1 3.0994 -3.0034 -0.0876 50 1 0.2841 -2.1965 5.2998 51 1 3.1282 -0.6456 1.2975 52 1 1.6014 -0.2733 2.1388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484170482.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:36 Heat of formation + Delta-G solvation = -0.340493 kcal Electronic energy + Delta-G solvation = -30749.959529 eV Core-core repulsion = 26906.979946 eV Total energy + Delta-G solvation = -3842.979582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.71588 -39.55212 -38.53093 -35.59446 -34.95966 -33.28879 -31.69590 -31.49556 -30.66696 -29.49186 -27.45331 -26.76480 -25.96942 -25.36732 -23.52648 -22.48265 -21.50733 -21.07463 -20.52951 -19.89571 -18.41164 -17.38316 -16.77090 -16.38005 -16.07715 -15.87027 -15.34504 -15.08249 -14.80759 -14.46950 -14.26969 -13.91468 -13.60945 -13.58577 -13.39270 -13.37361 -13.13312 -13.01249 -12.84693 -12.49995 -12.36376 -12.18449 -12.00587 -11.70698 -11.40960 -11.34212 -11.29210 -11.23204 -11.08064 -10.94838 -10.78984 -10.57617 -10.41574 -10.06930 -9.93925 -9.71839 -9.65986 -9.47870 -8.97114 -8.90857 -8.67775 -8.65436 -7.01488 -6.01141 -3.36458 1.18609 1.22703 2.67790 3.19799 3.27736 3.42925 3.45425 3.59058 4.15277 4.35973 4.44835 4.74468 4.78745 4.83150 4.84088 4.88890 5.04816 5.06812 5.18146 5.19137 5.23340 5.35050 5.37819 5.44736 5.56803 5.57466 5.61082 5.68359 5.72665 5.77846 5.89562 5.92802 5.95099 5.96336 6.00276 6.03874 6.21867 6.24434 6.27280 6.30692 6.33634 6.34855 6.48995 6.49460 6.57243 6.58628 6.61074 6.70342 6.79165 6.83384 6.99435 7.61065 7.90048 8.26950 8.28779 8.88304 9.65875 10.04478 11.14711 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.003150 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.115614 B = 8886.370276 C = 9839.057296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C 0.131 3.869 4 N -0.721 5.721 5 C 0.523 3.477 6 O -0.545 6.545 7 C -0.114 4.114 8 C -0.072 4.072 9 C -0.094 4.094 10 C -0.104 4.104 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.108 4.108 14 C -0.092 4.092 15 C -0.067 4.067 16 C -0.096 4.096 17 C -0.137 4.137 18 C 0.146 3.854 19 N -0.603 5.603 20 C -0.256 4.256 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.878 3.122 25 H -0.291 1.291 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.140 3.860 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.406 0.594 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.021 0.979 50 H 0.262 0.738 51 H 0.025 0.975 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 16.207 -4.835 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C 0.007 3.993 4 N -0.372 5.372 5 C 0.309 3.691 6 O -0.423 6.423 7 C -0.136 4.136 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.122 4.122 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.126 4.126 14 C -0.092 4.092 15 C -0.104 4.104 16 C -0.134 4.134 17 C -0.176 4.176 18 C 0.021 3.979 19 N -0.326 5.326 20 C -0.384 4.384 21 H 0.104 0.896 22 C -0.175 4.175 23 N -0.550 5.550 24 Si 0.709 3.291 25 H -0.219 1.219 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.014 3.986 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.043 0.957 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.622 16.567 -5.234 17.385 hybrid contribution 0.571 0.378 0.861 1.100 sum -0.051 16.945 -4.373 17.500 Atomic orbital electron populations 1.21740 0.93629 1.03272 0.99901 1.21356 0.97160 0.92512 0.98515 1.21452 0.98895 0.91946 0.87028 1.46147 1.53235 1.11810 1.26055 1.20242 0.80096 0.81827 0.86947 1.90661 1.38241 1.66274 1.47144 1.22015 0.96586 0.97122 0.97843 1.20988 0.93669 0.94833 1.01451 1.20511 0.93796 0.96325 0.98800 1.20648 0.97199 0.95745 0.98638 1.21030 0.98284 0.94541 1.00254 1.21029 0.92700 0.99861 1.00334 1.20607 0.98392 0.94609 0.99029 1.20621 0.95825 0.94541 0.98175 1.20932 0.95968 0.91070 1.02422 1.21362 0.99994 0.96157 0.95896 1.22048 1.01435 0.95430 0.98654 1.20956 0.96590 0.94594 0.85803 1.44300 1.65944 1.04547 1.17770 1.18928 1.18782 1.15567 0.85112 0.89615 1.25257 0.97695 0.98864 0.95667 1.69830 1.32934 1.48203 1.04052 0.87044 0.85930 0.79191 0.76968 1.21859 1.23187 1.19588 1.21362 0.96624 0.85484 0.95116 0.94007 0.90462 0.93414 0.91614 0.91756 0.75815 0.87352 0.89540 0.89441 0.86050 0.85918 0.85976 0.86220 0.90243 0.88197 0.92752 0.92430 0.91481 0.92706 0.91936 0.96072 0.92795 0.95691 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 7.81 37.16 0.29 -1.74 16 2 C -0.09 -1.49 0.53 -154.39 -0.08 -1.58 16 3 C 0.13 1.98 4.57 -4.04 -0.02 1.96 16 4 N -0.72 -10.83 5.00 -60.30 -0.30 -11.14 16 5 C 0.52 7.87 7.04 -10.98 -0.08 7.79 16 6 O -0.55 -9.63 15.51 5.56 0.09 -9.54 16 7 C -0.11 -1.44 3.47 -90.37 -0.31 -1.76 16 8 C -0.07 -0.83 6.31 -26.85 -0.17 -1.00 16 9 C -0.09 -1.11 6.14 -104.21 -0.64 -1.75 16 10 C -0.10 -1.10 10.04 -39.53 -0.40 -1.50 16 11 C -0.12 -1.17 10.05 -39.62 -0.40 -1.56 16 12 C -0.12 -1.14 10.05 -39.63 -0.40 -1.53 16 13 C -0.11 -1.12 10.04 -39.54 -0.40 -1.52 16 14 C -0.09 -1.08 6.14 -104.21 -0.64 -1.72 16 15 C -0.07 -0.80 6.10 -26.85 -0.16 -0.97 16 16 C -0.10 -1.39 4.71 -26.69 -0.13 -1.52 16 17 C -0.14 -2.07 5.74 -26.61 -0.15 -2.22 16 18 C 0.15 2.72 6.52 -3.71 -0.02 2.69 16 19 N -0.60 -13.34 2.21 -172.33 -0.38 -13.72 16 20 C -0.26 -6.73 10.04 -15.06 -0.15 -6.88 16 21 H 0.09 2.43 8.05 -52.49 -0.42 2.01 16 22 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 23 N -0.91 -26.57 13.97 55.49 0.78 -25.80 16 24 Si 0.88 21.50 24.35 -169.99 -4.14 17.36 16 25 H -0.29 -6.63 6.70 56.52 0.38 -6.25 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.66 6.46 56.52 0.36 -6.30 16 28 C 0.14 2.83 2.61 -3.72 -0.01 2.82 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 31 H 0.05 0.76 6.86 -51.93 -0.36 0.41 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.41 6.12 6.22 -40.82 -0.25 5.87 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.31 6.98 -51.93 -0.36 0.95 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.05 6.33 -51.93 -0.33 0.72 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.03 0.53 6.98 -51.92 -0.36 0.17 16 52 H 0.07 1.49 3.41 -51.93 -0.18 1.32 16 LS Contribution 393.03 15.07 5.92 5.92 Total: -1.00 -30.64 393.03 -10.50 -41.14 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.51 Total: 7.19 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.96 Total: -11.42 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.09 Total: -50.65 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.14 Total: 17.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.64 -10.50 -41.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484170482.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds