Wall clock time and date at job start Wed Apr 1 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 115.56143 * 2 1 4 4 C 1.38244 * 120.00202 * 84.29041 * 3 2 1 5 5 C 1.38231 * 120.00054 * 179.74193 * 4 3 2 6 6 C 1.38236 * 119.99775 * 0.54980 * 5 4 3 7 7 C 1.38231 * 120.00275 * 359.70339 * 6 5 4 8 8 C 1.38229 * 120.00008 * 0.02562 * 7 6 5 9 9 C 1.53004 * 117.49812 * 214.30983 * 2 1 3 10 10 C 1.53003 * 60.00079 * 252.51486 * 9 2 1 11 11 H 1.09000 * 117.49972 * 107.48814 * 10 9 2 12 12 C 1.50701 * 117.51490 * 252.52395 * 10 9 2 13 13 O 1.21278 * 119.99825 * 349.10709 * 12 10 9 14 14 N 1.34781 * 119.99887 * 169.10832 * 12 10 9 15 15 C 1.47015 * 125.64656 * 0.02562 * 14 12 10 16 16 C 1.54324 * 107.27146 * 181.02011 * 15 14 12 17 17 C 1.55159 * 102.93998 * 22.18896 * 16 15 14 18 18 H 1.09004 * 111.00343 * 82.57507 * 17 16 15 19 19 C 1.52999 * 111.00689 * 206.42316 * 17 16 15 20 20 C 1.53003 * 109.47147 * 293.54853 * 19 17 16 21 21 N 1.46505 * 109.47267 * 179.97438 * 20 19 17 22 22 C 1.36937 * 119.99922 * 180.02562 * 21 20 19 23 23 H 1.07992 * 119.99936 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99716 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00161 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99945 * 359.97438 * 24 22 21 27 27 H 1.48491 * 109.47263 * 90.00098 * 26 24 22 28 28 H 1.48502 * 109.46779 * 210.00212 * 26 24 22 29 29 H 1.48495 * 109.47109 * 329.99480 * 26 24 22 30 30 C 1.47423 * 125.64767 * 179.71381 * 14 12 10 31 31 H 1.09001 * 109.47312 * 274.30883 * 1 2 3 32 32 H 1.09004 * 109.47177 * 34.31229 * 1 2 3 33 33 H 1.09002 * 109.47218 * 154.30622 * 1 2 3 34 34 H 1.07998 * 119.99254 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99767 * 180.27264 * 5 4 3 36 36 H 1.08005 * 119.99494 * 179.72204 * 6 5 4 37 37 H 1.08002 * 120.00292 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.00499 * 179.97438 * 8 7 6 39 39 H 1.09005 * 117.49538 * 359.97438 * 9 2 1 40 40 H 1.08995 * 117.50029 * 145.02160 * 9 2 1 41 41 H 1.09003 * 109.88242 * 300.43685 * 15 14 12 42 42 H 1.09004 * 109.89108 * 61.60487 * 15 14 12 43 43 H 1.08997 * 110.72351 * 140.55084 * 16 15 14 44 44 H 1.09000 * 110.71920 * 263.65005 * 16 15 14 45 45 H 1.08999 * 109.47022 * 53.54513 * 19 17 16 46 46 H 1.08999 * 109.47262 * 173.55160 * 19 17 16 47 47 H 1.09002 * 109.47570 * 299.99994 * 20 19 17 48 48 H 1.09007 * 109.46918 * 59.99689 * 20 19 17 49 49 H 0.96994 * 119.99328 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00764 * 179.97438 * 25 24 22 51 51 H 1.09008 * 110.36237 * 274.74933 * 30 14 12 52 52 H 1.08999 * 110.36852 * 37.06634 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3594 0.0000 4 6 2.3710 2.0344 1.1913 5 6 2.9723 3.2791 1.1918 6 6 3.3725 3.8538 -0.0001 7 6 3.1769 3.1812 -1.1918 8 6 2.5808 1.9341 -1.1917 9 6 2.2364 -1.1210 -0.7650 10 6 2.2364 -1.1211 0.7650 11 1 1.6111 -1.8585 1.2683 12 6 3.5289 -0.7810 1.4613 13 8 4.5603 -0.7149 0.8267 14 7 3.5386 -0.5504 2.7892 15 6 2.3667 -0.5976 3.6756 16 6 2.8525 -0.2427 5.0967 17 6 4.1672 0.5369 4.8299 18 1 3.9613 1.5813 4.5953 19 6 5.1236 0.4225 6.0186 20 6 4.5228 1.1425 7.2277 21 7 5.4383 1.0324 8.3661 22 6 5.1100 1.6039 9.5665 23 1 4.1765 2.1360 9.6738 24 6 5.9772 1.4991 10.6453 25 7 5.6620 2.0488 11.7988 26 14 7.5917 0.5780 10.4598 27 1 8.6512 1.5200 10.0180 28 1 7.9733 -0.0197 11.7645 29 1 7.4340 -0.4988 9.4494 30 6 4.7272 -0.2155 3.5944 31 1 -0.3634 0.0772 1.0248 32 1 -0.3634 0.8489 -0.5793 33 1 -0.3634 -0.9261 -0.4456 34 1 2.0537 1.5875 2.1218 35 1 3.1253 3.8045 2.1229 36 1 3.8382 4.8283 0.0000 37 1 3.4900 3.6301 -2.1229 38 1 2.4276 1.4087 -2.1228 39 1 1.6111 -1.8588 -1.2679 40 1 3.1715 -0.8753 -1.2683 41 1 1.6231 0.1280 3.3460 42 1 1.9376 -1.5997 3.6701 43 1 2.1256 0.3899 5.6061 44 1 3.0472 -1.1462 5.6746 45 1 5.2773 -0.6289 6.2614 46 1 6.0791 0.8797 5.7615 47 1 4.3690 2.1939 6.9851 48 1 3.5672 0.6854 7.4848 49 1 6.2766 0.5541 8.2698 50 1 6.2678 1.9753 12.5529 51 1 5.2447 -1.1239 3.9030 52 1 5.3985 0.4310 3.0291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484529401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:37 Heat of formation + Delta-G solvation = 23.228757 kcal Electronic energy + Delta-G solvation = -29989.635375 eV Core-core repulsion = 26147.677832 eV Total energy + Delta-G solvation = -3841.957543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.93341 -39.42988 -38.18309 -36.84098 -35.33476 -33.01743 -31.20954 -31.09312 -30.91646 -29.71572 -29.09526 -27.88902 -24.96828 -23.42205 -23.26187 -22.99685 -22.29231 -21.29494 -20.26817 -20.08386 -19.11952 -17.68693 -17.51926 -16.80137 -16.37010 -15.70926 -15.35730 -15.12259 -14.81619 -14.60452 -14.51908 -14.14332 -13.88463 -13.80092 -13.61036 -13.38547 -13.21133 -13.07947 -12.93464 -12.79410 -12.71215 -12.51088 -12.27321 -12.08579 -11.81249 -11.58307 -11.37556 -11.33364 -11.23250 -10.89341 -10.78685 -10.68060 -10.51214 -10.42338 -10.37079 -10.10398 -9.88382 -9.59577 -9.10671 -8.94447 -8.89625 -8.77373 -7.23405 -5.77313 -3.12802 1.12589 1.21455 2.32577 2.74758 3.36354 3.37502 3.40562 3.45350 3.56304 4.06324 4.24892 4.35291 4.42488 4.47206 4.59033 4.63858 4.70698 4.74105 4.80587 4.83950 4.89247 5.05003 5.18942 5.21655 5.26877 5.28271 5.32460 5.37721 5.44252 5.45006 5.49091 5.49677 5.60463 5.66072 5.72660 5.73555 5.76269 5.82977 5.83807 5.84913 5.97229 6.01136 6.12576 6.14872 6.27202 6.30013 6.33816 6.36455 6.71722 6.76295 6.79131 7.36714 7.99045 8.04099 8.41876 9.21203 9.93765 10.13523 11.41146 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002298 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.097394 B =12179.154586 C =12721.460740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.064 4.064 3 C -0.053 4.053 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.134 4.134 10 C -0.176 4.176 11 H 0.126 0.874 12 C 0.562 3.438 13 O -0.537 6.537 14 N -0.613 5.613 15 C 0.100 3.900 16 C -0.128 4.128 17 C -0.092 4.092 18 H 0.086 0.914 19 C -0.120 4.120 20 C 0.159 3.841 21 N -0.758 5.758 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.111 3.889 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.025 0.975 48 H 0.027 0.973 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.069 0.931 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 -4.339 -29.251 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.064 4.064 3 C -0.053 4.053 4 C -0.123 4.123 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.172 4.172 10 C -0.197 4.197 11 H 0.144 0.856 12 C 0.350 3.650 13 O -0.414 6.414 14 N -0.347 5.347 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.112 4.112 18 H 0.104 0.896 19 C -0.158 4.158 20 C 0.032 3.968 21 N -0.404 5.404 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.583 5.583 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.011 4.011 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.087 0.913 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.670 -4.199 -29.498 31.999 hybrid contribution 1.193 -0.706 0.238 1.406 sum -10.477 -4.905 -29.260 31.464 Atomic orbital electron populations 1.21371 0.90332 1.02576 1.02582 1.20217 0.94691 0.87860 1.03664 1.18941 0.98992 0.93785 0.93600 1.21033 0.98887 0.94949 0.97470 1.21158 0.98396 0.95539 0.98289 1.21180 0.99892 1.00018 0.92692 1.21106 0.99471 0.95149 0.98151 1.20918 0.98559 0.95448 0.97425 1.23222 1.02826 0.99472 0.91648 1.22407 0.97757 1.03478 0.96032 0.85620 1.19135 0.89373 0.76211 0.80251 1.90697 1.34245 1.51919 1.64557 1.48378 1.10160 1.69621 1.06529 1.22115 0.88434 1.01283 0.90440 1.22752 0.97778 1.01417 0.94644 1.22339 0.95171 0.99586 0.94086 0.89553 1.21720 0.98405 1.01548 0.94163 1.20599 0.93188 0.97088 0.85903 1.42732 1.21416 1.66873 1.09350 1.19058 1.04546 1.27314 0.86484 0.89259 1.24684 0.98410 1.00542 0.95634 1.69699 1.37604 1.49369 1.01623 0.86529 0.85055 0.80009 0.76831 1.21068 1.21737 1.20323 1.22364 0.87981 0.99507 0.91287 0.91665 0.91444 0.91704 0.86191 0.85897 0.86120 0.86117 0.86169 0.87553 0.87334 0.91455 0.91489 0.89464 0.90042 0.91652 0.91583 0.95672 0.95472 0.80704 0.93060 0.91323 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.84 37.16 0.37 -0.28 16 2 C -0.06 -0.51 2.18 -155.66 -0.34 -0.85 16 3 C -0.05 -0.52 4.37 -104.62 -0.46 -0.98 16 4 C -0.11 -1.09 8.57 -39.58 -0.34 -1.43 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 7 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 8 C -0.11 -1.00 9.44 -39.58 -0.37 -1.38 16 9 C -0.13 -1.08 9.13 -26.73 -0.24 -1.33 16 10 C -0.18 -1.57 5.11 -91.77 -0.47 -2.04 16 11 H 0.13 0.87 8.09 -51.93 -0.42 0.45 16 12 C 0.56 6.91 5.73 -10.98 -0.06 6.85 16 13 O -0.54 -8.73 16.57 5.56 0.09 -8.64 16 14 N -0.61 -6.71 3.10 -170.39 -0.53 -7.23 16 15 C 0.10 0.84 6.21 -3.07 -0.02 0.82 16 16 C -0.13 -1.22 5.59 -24.90 -0.14 -1.36 16 17 C -0.09 -1.03 3.09 -88.36 -0.27 -1.30 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 C -0.12 -1.69 4.84 -26.73 -0.13 -1.82 16 20 C 0.16 2.92 6.11 -4.04 -0.02 2.90 16 21 N -0.76 -17.94 5.41 -59.90 -0.32 -18.26 16 22 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 26 Si 0.89 22.19 27.74 -169.99 -4.71 17.47 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 30 C 0.11 1.30 6.38 -2.42 -0.02 1.28 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 34 H 0.12 1.17 5.97 -52.49 -0.31 0.86 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.95 8.04 -52.48 -0.42 0.52 16 39 H 0.11 0.60 8.05 -51.93 -0.42 0.18 16 40 H 0.11 1.08 7.68 -51.93 -0.40 0.68 16 41 H 0.07 0.50 6.59 -51.93 -0.34 0.15 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.79 8.13 -51.93 -0.42 0.37 16 44 H 0.08 0.81 8.02 -51.93 -0.42 0.39 16 45 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.03 0.50 7.51 -51.93 -0.39 0.11 16 49 H 0.36 8.33 5.53 -40.82 -0.23 8.11 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 51 H 0.07 0.82 8.04 -51.92 -0.42 0.40 16 52 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 LS Contribution 415.24 15.07 6.26 6.26 Total: -1.00 -34.70 415.24 -11.24 -45.94 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.83 Total: 5.79 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.97 Total: -12.64 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.08 Total: -54.18 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.70 -11.24 -45.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484529401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds