Wall clock time and date at job start Wed Apr 1 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 115.56143 * 2 1 4 4 C 1.38244 * 120.00202 * 84.29041 * 3 2 1 5 5 C 1.38231 * 120.00054 * 179.74193 * 4 3 2 6 6 C 1.38236 * 119.99775 * 0.54980 * 5 4 3 7 7 C 1.38231 * 120.00275 * 359.70339 * 6 5 4 8 8 C 1.38229 * 120.00008 * 0.02562 * 7 6 5 9 9 C 1.53004 * 117.49812 * 214.30983 * 2 1 3 10 10 C 1.53003 * 60.00079 * 252.51486 * 9 2 1 11 11 H 1.09000 * 117.49972 * 107.48814 * 10 9 2 12 12 C 1.50701 * 117.51490 * 252.52395 * 10 9 2 13 13 O 1.21278 * 119.99825 * 349.10709 * 12 10 9 14 14 N 1.34781 * 119.99887 * 169.10832 * 12 10 9 15 15 C 1.47015 * 125.64656 * 0.02562 * 14 12 10 16 16 C 1.54324 * 107.27146 * 181.02011 * 15 14 12 17 17 C 1.55159 * 102.93998 * 22.18896 * 16 15 14 18 18 H 1.09004 * 111.00343 * 82.57507 * 17 16 15 19 19 C 1.52999 * 111.00689 * 206.42316 * 17 16 15 20 20 C 1.53003 * 109.47147 * 293.54853 * 19 17 16 21 21 N 1.46505 * 109.47267 * 179.97438 * 20 19 17 22 22 C 1.36937 * 119.99922 * 180.02562 * 21 20 19 23 23 H 1.07992 * 119.99936 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99716 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00161 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99945 * 359.97438 * 24 22 21 27 27 H 1.48491 * 109.47263 * 90.00098 * 26 24 22 28 28 H 1.48502 * 109.46779 * 210.00212 * 26 24 22 29 29 H 1.48495 * 109.47109 * 329.99480 * 26 24 22 30 30 C 1.47423 * 125.64767 * 179.71381 * 14 12 10 31 31 H 1.09001 * 109.47312 * 274.30883 * 1 2 3 32 32 H 1.09004 * 109.47177 * 34.31229 * 1 2 3 33 33 H 1.09002 * 109.47218 * 154.30622 * 1 2 3 34 34 H 1.07998 * 119.99254 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99767 * 180.27264 * 5 4 3 36 36 H 1.08005 * 119.99494 * 179.72204 * 6 5 4 37 37 H 1.08002 * 120.00292 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.00499 * 179.97438 * 8 7 6 39 39 H 1.09005 * 117.49538 * 359.97438 * 9 2 1 40 40 H 1.08995 * 117.50029 * 145.02160 * 9 2 1 41 41 H 1.09003 * 109.88242 * 300.43685 * 15 14 12 42 42 H 1.09004 * 109.89108 * 61.60487 * 15 14 12 43 43 H 1.08997 * 110.72351 * 140.55084 * 16 15 14 44 44 H 1.09000 * 110.71920 * 263.65005 * 16 15 14 45 45 H 1.08999 * 109.47022 * 53.54513 * 19 17 16 46 46 H 1.08999 * 109.47262 * 173.55160 * 19 17 16 47 47 H 1.09002 * 109.47570 * 299.99994 * 20 19 17 48 48 H 1.09007 * 109.46918 * 59.99689 * 20 19 17 49 49 H 0.96994 * 119.99328 * 359.97438 * 21 20 19 50 50 H 0.97000 * 120.00764 * 179.97438 * 25 24 22 51 51 H 1.09008 * 110.36237 * 274.74933 * 30 14 12 52 52 H 1.08999 * 110.36852 * 37.06634 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3594 0.0000 4 6 2.3710 2.0344 1.1913 5 6 2.9723 3.2791 1.1918 6 6 3.3725 3.8538 -0.0001 7 6 3.1769 3.1812 -1.1918 8 6 2.5808 1.9341 -1.1917 9 6 2.2364 -1.1210 -0.7650 10 6 2.2364 -1.1211 0.7650 11 1 1.6111 -1.8585 1.2683 12 6 3.5289 -0.7810 1.4613 13 8 4.5603 -0.7149 0.8267 14 7 3.5386 -0.5504 2.7892 15 6 2.3667 -0.5976 3.6756 16 6 2.8525 -0.2427 5.0967 17 6 4.1672 0.5369 4.8299 18 1 3.9613 1.5813 4.5953 19 6 5.1236 0.4225 6.0186 20 6 4.5228 1.1425 7.2277 21 7 5.4383 1.0324 8.3661 22 6 5.1100 1.6039 9.5665 23 1 4.1765 2.1360 9.6738 24 6 5.9772 1.4991 10.6453 25 7 5.6620 2.0488 11.7988 26 14 7.5917 0.5780 10.4598 27 1 8.6512 1.5200 10.0180 28 1 7.9733 -0.0197 11.7645 29 1 7.4340 -0.4988 9.4494 30 6 4.7272 -0.2155 3.5944 31 1 -0.3634 0.0772 1.0248 32 1 -0.3634 0.8489 -0.5793 33 1 -0.3634 -0.9261 -0.4456 34 1 2.0537 1.5875 2.1218 35 1 3.1253 3.8045 2.1229 36 1 3.8382 4.8283 0.0000 37 1 3.4900 3.6301 -2.1229 38 1 2.4276 1.4087 -2.1228 39 1 1.6111 -1.8588 -1.2679 40 1 3.1715 -0.8753 -1.2683 41 1 1.6231 0.1280 3.3460 42 1 1.9376 -1.5997 3.6701 43 1 2.1256 0.3899 5.6061 44 1 3.0472 -1.1462 5.6746 45 1 5.2773 -0.6289 6.2614 46 1 6.0791 0.8797 5.7615 47 1 4.3690 2.1939 6.9851 48 1 3.5672 0.6854 7.4848 49 1 6.2766 0.5541 8.2698 50 1 6.2678 1.9753 12.5529 51 1 5.2447 -1.1239 3.9030 52 1 5.3985 0.4310 3.0291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484529401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:35 Heat of formation + Delta-G solvation = 4.040223 kcal Electronic energy + Delta-G solvation = -29990.467452 eV Core-core repulsion = 26147.677832 eV Total energy + Delta-G solvation = -3842.789620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.71699 -40.22177 -39.06342 -37.65760 -36.95606 -34.54890 -32.97027 -31.81347 -31.65059 -30.67216 -29.75874 -29.03712 -26.17452 -24.66353 -24.08490 -23.78295 -23.20594 -22.74244 -21.29061 -20.76992 -19.94017 -19.58698 -18.42455 -17.55260 -17.27238 -16.63531 -16.55495 -16.24850 -15.83477 -15.78086 -15.54915 -15.33123 -14.92186 -14.78392 -14.54779 -14.37993 -14.24915 -14.11602 -13.80387 -13.70791 -13.63375 -13.46299 -13.20072 -13.06133 -12.91384 -12.84471 -12.72683 -12.37356 -12.11278 -12.06261 -11.95893 -11.88872 -11.75933 -11.55323 -11.49135 -11.34291 -11.11590 -10.95645 -10.70997 -9.84511 -9.65803 -9.64967 -9.28824 -8.02960 -5.36301 0.40841 0.47840 1.38134 1.41397 1.47496 1.48774 1.91852 2.48451 2.70526 2.84289 3.28745 3.31136 3.48381 3.59936 3.67481 3.73881 3.77056 3.92501 3.99072 4.05805 4.12411 4.19081 4.22622 4.32743 4.34674 4.44474 4.52802 4.56367 4.60659 4.68021 4.73110 4.75844 4.83231 4.83490 4.87730 4.92973 4.95471 4.96983 5.05496 5.13099 5.14130 5.15634 5.21211 5.33384 5.34691 5.35870 5.45385 5.56417 5.60776 5.63743 5.76220 6.09137 6.21500 6.51432 7.08410 7.14136 7.85543 8.03557 9.18562 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002298 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.097394 B =12179.154586 C =12721.460740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.133 4.133 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.133 4.133 10 C -0.180 4.180 11 H 0.153 0.847 12 C 0.556 3.444 13 O -0.587 6.587 14 N -0.612 5.612 15 C 0.102 3.898 16 C -0.125 4.125 17 C -0.083 4.083 18 H 0.087 0.913 19 C -0.107 4.107 20 C 0.156 3.844 21 N -0.763 5.763 22 C -0.235 4.235 23 H 0.057 0.943 24 C -0.066 4.066 25 N -0.984 5.984 26 Si 0.956 3.044 27 H -0.280 1.280 28 H -0.296 1.296 29 H -0.250 1.250 30 C 0.113 3.887 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.021 0.979 48 H 0.034 0.966 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 -6.035 -31.079 34.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.056 4.056 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.137 4.137 9 C -0.170 4.170 10 C -0.201 4.201 11 H 0.170 0.830 12 C 0.346 3.654 13 O -0.468 6.468 14 N -0.344 5.344 15 C -0.020 4.020 16 C -0.163 4.163 17 C -0.102 4.102 18 H 0.105 0.895 19 C -0.146 4.146 20 C 0.031 3.969 21 N -0.409 5.409 22 C -0.366 4.366 23 H 0.076 0.924 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.783 3.217 27 H -0.206 1.206 28 H -0.222 1.222 29 H -0.174 1.174 30 C -0.010 4.010 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.052 0.948 49 H 0.198 0.802 50 H 0.067 0.933 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.711 -5.906 -31.361 34.351 hybrid contribution 1.447 -0.093 0.776 1.645 sum -11.263 -5.999 -30.586 33.141 Atomic orbital electron populations 1.21398 0.88253 1.03554 1.03256 1.20294 0.95882 0.86580 1.02828 1.19239 0.98911 0.94768 0.93516 1.21157 0.99437 0.95214 0.97895 1.21373 0.98876 0.95974 0.98887 1.21441 1.00082 1.00824 0.92733 1.21418 0.99094 0.95222 0.98906 1.21201 0.98593 0.95797 0.98064 1.23292 1.02326 1.00260 0.91155 1.22482 0.96494 1.04704 0.96426 0.82966 1.19756 0.89992 0.75305 0.80352 1.90670 1.36255 1.54249 1.65625 1.48447 1.10621 1.68752 1.06565 1.22258 0.87653 1.03077 0.89004 1.22754 0.96800 1.01203 0.95549 1.22175 0.95476 0.99955 0.92627 0.89486 1.21565 0.98679 1.01084 0.93228 1.20782 0.92822 0.97497 0.85836 1.42792 1.22482 1.66438 1.09147 1.19058 1.03096 1.26114 0.88291 0.92448 1.25537 1.02632 1.02292 0.95304 1.69881 1.39284 1.51653 1.02696 0.85392 0.79940 0.79233 0.77130 1.20603 1.22232 1.17444 1.22231 0.88334 0.99124 0.91295 0.90953 0.91633 0.89757 0.85907 0.85447 0.84708 0.84224 0.84884 0.84633 0.89762 0.89927 0.89292 0.88733 0.90027 0.91118 0.91791 0.96078 0.94846 0.80179 0.93335 0.91412 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.84 71.98 0.71 -0.19 16 2 C -0.06 -0.76 2.18 -52.93 -0.12 -0.88 16 3 C -0.06 -1.21 4.37 -19.87 -0.09 -1.30 16 4 C -0.12 -2.40 8.57 22.27 0.19 -2.21 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 6 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 7 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 8 C -0.12 -2.18 9.44 22.27 0.21 -1.97 16 9 C -0.13 -1.89 9.13 30.60 0.28 -1.61 16 10 C -0.18 -2.80 5.11 -11.54 -0.06 -2.86 16 11 H 0.15 1.52 8.09 -2.39 -0.02 1.50 16 12 C 0.56 13.13 5.73 87.66 0.50 13.63 16 13 O -0.59 -19.33 16.57 -3.02 -0.05 -19.38 16 14 N -0.61 -12.46 3.10 -811.37 -2.51 -14.98 16 15 C 0.10 1.42 6.21 86.73 0.54 1.96 16 16 C -0.13 -2.08 5.59 31.78 0.18 -1.90 16 17 C -0.08 -1.72 3.09 -9.33 -0.03 -1.75 16 18 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 19 C -0.11 -2.84 4.84 30.59 0.15 -2.69 16 20 C 0.16 5.55 6.11 86.38 0.53 6.08 16 21 N -0.76 -35.27 5.41 -343.43 -1.86 -37.13 16 22 C -0.23 -13.41 10.47 84.03 0.88 -12.52 16 23 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 24 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 25 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 26 Si 0.96 45.55 27.74 68.60 1.90 47.45 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 28 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.25 -10.66 6.52 99.48 0.65 -10.02 16 30 C 0.11 2.56 6.38 86.93 0.55 3.11 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.60 8.08 -2.38 -0.02 0.58 16 33 H 0.08 0.40 7.90 -2.39 -0.02 0.38 16 34 H 0.12 2.27 5.97 -2.91 -0.02 2.25 16 35 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.13 1.97 8.04 -2.91 -0.02 1.95 16 39 H 0.14 1.08 8.05 -2.38 -0.02 1.06 16 40 H 0.08 1.65 7.68 -2.39 -0.02 1.63 16 41 H 0.08 0.95 6.59 -2.39 -0.02 0.94 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.09 1.47 8.13 -2.39 -0.02 1.45 16 44 H 0.08 1.39 8.02 -2.39 -0.02 1.38 16 45 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.03 1.17 7.51 -2.38 -0.02 1.15 16 49 H 0.37 16.11 5.53 -92.71 -0.51 15.59 16 50 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 51 H 0.07 1.54 8.04 -2.38 -0.02 1.53 16 52 H 0.06 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -77.04 415.24 3.67 -73.36 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.32 Total: 29.14 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 5.57 Total: -15.43 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -4.07 Total: -115.15 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Total: -77.04 3.67 -73.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484529401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.404 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds