Wall clock time and date at job start Wed Apr 1 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50697 * 115.55420 * 2 1 4 4 C 1.38233 * 120.00169 * 65.02146 * 3 2 1 5 5 C 1.38238 * 119.99846 * 179.79295 * 4 3 2 6 6 C 1.38234 * 119.99938 * 0.46366 * 5 4 3 7 7 C 1.38234 * 120.00121 * 359.76517 * 6 5 4 8 8 C 1.38230 * 119.99871 * 0.03063 * 7 6 5 9 9 C 1.53006 * 117.49724 * 214.32331 * 2 1 3 10 10 C 1.53002 * 60.00036 * 252.51368 * 9 2 1 11 11 H 1.08994 * 117.49648 * 107.49754 * 10 9 2 12 12 C 1.50696 * 117.49558 * 252.50740 * 10 9 2 13 13 O 1.21278 * 120.00365 * 344.42006 * 12 10 9 14 14 N 1.34783 * 119.99738 * 164.41374 * 12 10 9 15 15 C 1.47021 * 125.64863 * 0.02809 * 14 12 10 16 16 C 1.54324 * 107.26924 * 178.90131 * 15 14 12 17 17 C 1.55149 * 102.94267 * 337.80711 * 16 15 14 18 18 H 1.08995 * 111.00825 * 277.42476 * 17 16 15 19 19 C 1.53004 * 111.00194 * 153.61339 * 17 16 15 20 20 C 1.53006 * 109.46967 * 66.45512 * 19 17 16 21 21 N 1.46494 * 109.46710 * 179.97438 * 20 19 17 22 22 C 1.36944 * 119.99669 * 180.02562 * 21 20 19 23 23 H 1.07994 * 120.00100 * 359.97438 * 22 21 20 24 24 C 1.38816 * 120.00134 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99841 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47501 * 59.99684 * 26 24 22 28 28 H 1.48503 * 109.46977 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47088 * 299.99253 * 26 24 22 30 30 C 1.47422 * 125.64517 * 179.71668 * 14 12 10 31 31 H 1.08996 * 109.47483 * 154.28181 * 1 2 3 32 32 H 1.09004 * 109.47245 * 274.27926 * 1 2 3 33 33 H 1.09003 * 109.46971 * 34.27927 * 1 2 3 34 34 H 1.08001 * 119.99588 * 359.97438 * 4 3 2 35 35 H 1.07999 * 119.99790 * 180.25489 * 5 4 3 36 36 H 1.07995 * 119.99567 * 179.79304 * 6 5 4 37 37 H 1.07997 * 119.99947 * 179.97438 * 7 6 5 38 38 H 1.07999 * 119.99754 * 179.97438 * 8 7 6 39 39 H 1.09000 * 117.49527 * 0.02562 * 9 2 1 40 40 H 1.09002 * 117.49627 * 145.02125 * 9 2 1 41 41 H 1.08998 * 109.88120 * 298.32282 * 15 14 12 42 42 H 1.09000 * 109.87749 * 59.48597 * 15 14 12 43 43 H 1.09000 * 110.71763 * 96.17448 * 16 15 14 44 44 H 1.09000 * 110.71601 * 219.44023 * 16 15 14 45 45 H 1.09002 * 109.46819 * 186.45295 * 19 17 16 46 46 H 1.08998 * 109.47262 * 306.45135 * 19 17 16 47 47 H 1.08998 * 109.46940 * 300.00014 * 20 19 17 48 48 H 1.08994 * 109.47165 * 60.00137 * 20 19 17 49 49 H 0.97003 * 120.00674 * 0.02562 * 21 20 19 50 50 H 0.97000 * 120.00353 * 180.02562 * 25 24 22 51 51 H 1.08999 * 110.37168 * 323.00822 * 30 14 12 52 52 H 1.09000 * 110.36641 * 85.33191 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.0221 2.2012 1.0851 5 6 2.6220 3.4466 1.0869 6 6 3.3718 3.8542 -0.0006 7 6 3.5258 3.0144 -1.0877 8 6 2.9294 1.7674 -1.0877 9 6 2.2364 -1.1209 -0.7653 10 6 2.2364 -1.1213 0.7647 11 1 1.6112 -1.8589 1.2678 12 6 3.5292 -0.7817 1.4606 13 8 4.5729 -0.7989 0.8432 14 7 3.5255 -0.4587 2.7691 15 6 2.3379 -0.3995 3.6338 16 6 2.8201 -0.0163 5.0488 17 6 4.3142 -0.4339 5.0318 18 1 4.4248 -1.4984 5.2380 19 6 5.1283 0.4011 6.0223 20 6 4.6845 0.0748 7.4498 21 7 5.4644 0.8739 8.3981 22 6 5.2413 0.7500 9.7436 23 1 4.4901 0.0636 10.1054 24 6 5.9798 1.5075 10.6423 25 7 6.8950 2.3444 10.2013 26 14 5.6750 1.3391 12.4775 27 1 5.9303 -0.0629 12.8952 28 1 6.5859 2.2500 13.2162 29 1 4.2658 1.6969 12.7800 30 6 4.7125 -0.1125 3.5719 31 1 -0.3634 -0.9258 -0.4459 32 1 -0.3634 0.0767 1.0248 33 1 -0.3633 0.8492 -0.5788 34 1 1.4325 1.8845 1.9328 35 1 2.5020 4.1026 1.9365 36 1 3.8376 4.8285 -0.0005 37 1 4.1113 3.3330 -1.9375 38 1 3.0494 1.1114 -1.9372 39 1 1.6111 -1.8580 -1.2690 40 1 3.1715 -0.8749 -1.2685 41 1 1.6453 0.3551 3.2610 42 1 1.8494 -1.3735 3.6597 43 1 2.7213 1.0569 5.2124 44 1 2.2720 -0.5751 5.8074 45 1 6.1872 0.1689 5.9089 46 1 4.9654 1.4605 5.8243 47 1 3.6256 0.3070 7.5631 48 1 4.8474 -0.9845 7.6477 49 1 6.1389 1.4907 8.0732 50 1 7.4114 2.8735 10.8292 51 1 5.5658 -0.7193 3.2687 52 1 4.9441 0.9476 3.4690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484529402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:41 Heat of formation + Delta-G solvation = 18.364340 kcal Electronic energy + Delta-G solvation = -29835.934921 eV Core-core repulsion = 25993.766441 eV Total energy + Delta-G solvation = -3842.168480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.85865 -39.42787 -38.11289 -36.80333 -35.12659 -32.95910 -31.17264 -30.99761 -30.76975 -29.57183 -29.02205 -27.57916 -24.87572 -23.42331 -23.39504 -22.95653 -22.25665 -21.37360 -20.11921 -20.04153 -19.02207 -17.67368 -17.09962 -16.78394 -16.13345 -15.77096 -15.30665 -15.11927 -14.79295 -14.67191 -14.33628 -13.96296 -13.85303 -13.64834 -13.57029 -13.35808 -13.28073 -13.06297 -12.97054 -12.72477 -12.60959 -12.46113 -12.17272 -12.00311 -11.63717 -11.40315 -11.32948 -11.23777 -11.05356 -10.81370 -10.73233 -10.62445 -10.46705 -10.37747 -10.30363 -10.03911 -9.86512 -9.66730 -9.08580 -8.89841 -8.85647 -8.69460 -6.90977 -5.75438 -3.04201 1.13109 1.23522 2.40082 2.81315 3.36761 3.44317 3.48431 3.49782 3.60948 4.10680 4.28053 4.37908 4.48856 4.55316 4.59821 4.65753 4.73141 4.82765 4.83213 4.90496 4.94152 5.11066 5.21966 5.23548 5.31250 5.34508 5.40594 5.43788 5.46976 5.48236 5.55777 5.63653 5.68004 5.69913 5.74323 5.84050 5.85378 5.86006 5.87362 5.94027 6.13002 6.18143 6.27076 6.29364 6.34634 6.37170 6.38439 6.41988 6.80519 6.84976 6.89890 7.44252 7.69771 8.10005 8.43755 9.54379 10.13378 10.47504 11.47534 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.002174 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.549108 B =12874.977041 C =13513.642555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.065 4.065 3 C -0.054 4.054 4 C -0.104 4.104 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.137 4.137 10 C -0.172 4.172 11 H 0.127 0.873 12 C 0.561 3.439 13 O -0.539 6.539 14 N -0.610 5.610 15 C 0.102 3.898 16 C -0.127 4.127 17 C -0.093 4.093 18 H 0.083 0.917 19 C -0.115 4.115 20 C 0.156 3.844 21 N -0.735 5.735 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C 0.111 3.889 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.256 0.744 51 H 0.076 0.924 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.903 -3.625 -25.768 29.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.055 4.055 4 C -0.122 4.122 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.122 4.122 9 C -0.175 4.175 10 C -0.193 4.193 11 H 0.144 0.856 12 C 0.350 3.650 13 O -0.416 6.416 14 N -0.344 5.344 15 C -0.021 4.021 16 C -0.165 4.165 17 C -0.113 4.113 18 H 0.102 0.898 19 C -0.153 4.153 20 C 0.028 3.972 21 N -0.379 5.379 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.739 3.261 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.011 4.011 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.037 0.963 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.409 -3.700 -26.020 29.973 hybrid contribution 0.111 0.096 1.139 1.149 sum -14.298 -3.604 -24.881 28.922 Atomic orbital electron populations 1.21364 0.90406 1.02589 1.02505 1.20233 0.94696 0.87887 1.03751 1.18937 0.98152 0.93570 0.94792 1.20922 0.99772 0.93915 0.97562 1.21150 0.97645 0.96359 0.98438 1.21179 0.98853 0.99808 0.93909 1.21116 0.99725 0.94280 0.98654 1.20978 0.96972 0.96203 0.98006 1.23225 1.02846 0.99593 0.91790 1.22398 0.97761 1.03210 0.95950 0.85551 1.19131 0.89485 0.76218 0.80211 1.90693 1.33361 1.52979 1.64579 1.48352 1.09418 1.68093 1.08512 1.22094 0.88062 1.01094 0.90854 1.22736 0.96253 1.02740 0.94729 1.22283 0.94820 1.00978 0.93234 0.89814 1.21662 0.99517 0.99327 0.94831 1.20612 0.94665 0.94544 0.87370 1.42375 1.44372 1.48773 1.02372 1.19186 1.16137 1.18958 0.82817 0.91277 1.24753 0.98930 0.99370 0.98036 1.69651 1.26159 1.28982 1.33505 0.86260 0.77284 0.77242 0.85361 1.21269 1.21676 1.21278 1.22278 0.88328 1.00764 0.89720 0.91712 0.91702 0.91469 0.86323 0.85918 0.86120 0.86114 0.86136 0.87536 0.87324 0.91598 0.91618 0.90096 0.89634 0.91566 0.91620 0.96291 0.96580 0.78313 0.93457 0.90559 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.77 37.16 0.36 -0.29 16 2 C -0.07 -0.53 2.29 -155.66 -0.36 -0.89 16 3 C -0.05 -0.54 4.11 -104.62 -0.43 -0.97 16 4 C -0.10 -1.04 9.64 -39.58 -0.38 -1.42 16 5 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 7 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 8 C -0.10 -1.05 9.23 -39.58 -0.37 -1.42 16 9 C -0.14 -1.13 8.88 -26.73 -0.24 -1.37 16 10 C -0.17 -1.59 5.10 -91.77 -0.47 -2.06 16 11 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 12 C 0.56 7.23 6.59 -10.98 -0.07 7.16 16 13 O -0.54 -9.01 16.63 5.56 0.09 -8.92 16 14 N -0.61 -7.18 3.33 -170.66 -0.57 -7.75 16 15 C 0.10 0.93 6.49 -3.06 -0.02 0.91 16 16 C -0.13 -1.32 5.59 -24.90 -0.14 -1.46 16 17 C -0.09 -1.15 3.05 -88.59 -0.27 -1.42 16 18 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.12 -1.79 4.84 -26.73 -0.13 -1.91 16 20 C 0.16 3.05 6.11 -4.04 -0.02 3.02 16 21 N -0.73 -18.76 5.60 -59.91 -0.34 -19.10 16 22 C -0.24 -6.77 9.99 -15.05 -0.15 -6.92 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 26 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C 0.11 1.42 6.37 -2.65 -0.02 1.41 16 31 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.12 1.05 6.69 -52.49 -0.35 0.70 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.07 7.01 -52.49 -0.37 0.70 16 39 H 0.11 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.11 1.07 6.74 -51.93 -0.35 0.72 16 41 H 0.07 0.53 6.77 -51.93 -0.35 0.18 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 44 H 0.09 0.84 8.13 -51.93 -0.42 0.42 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 47 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 50 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 51 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 52 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 419.09 15.07 6.32 6.32 Total: -1.00 -34.00 419.09 -11.60 -45.60 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.82 Total: 7.05 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.99 Total: -12.86 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.18 Total: -54.64 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.00 -11.60 -45.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484529402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.964 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds