Wall clock time and date at job start Wed Apr 1 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.45257 * 2 1 4 4 C 1.36940 * 120.00137 * 299.97085 * 3 2 1 5 5 H 1.08006 * 119.99601 * 359.97438 * 4 3 2 6 6 C 1.38812 * 120.00179 * 179.97438 * 4 3 2 7 7 N 1.31613 * 119.99824 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99757 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47447 * 60.00057 * 8 6 4 10 10 H 1.48503 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47126 * 299.99425 * 8 6 4 12 12 C 1.53038 * 109.45752 * 119.96736 * 2 1 3 13 13 C 1.53202 * 109.33724 * 181.36766 * 12 2 1 14 14 N 1.46938 * 108.76999 * 305.41280 * 13 12 2 15 15 C 1.34766 * 120.60371 * 233.53098 * 14 13 12 16 16 O 1.21286 * 120.00114 * 174.59756 * 15 14 13 17 17 C 1.50702 * 120.00175 * 354.60211 * 15 14 13 18 18 H 1.08998 * 109.67847 * 335.19625 * 17 15 14 19 19 C 1.53321 * 109.68317 * 95.75036 * 17 15 14 20 20 C 1.52727 * 108.39424 * 189.58099 * 19 17 15 21 21 C 1.50628 * 110.59015 * 308.90021 * 20 19 17 22 22 C 1.38912 * 117.74739 * 197.41960 * 21 20 19 23 23 C 1.37938 * 120.54051 * 180.60316 * 22 21 20 24 24 C 1.38266 * 119.77337 * 359.96247 * 23 22 21 25 25 C 1.37935 * 119.77185 * 359.88269 * 24 23 22 26 26 C 1.37660 * 122.56325 * 17.78442 * 21 20 19 27 27 C 1.50631 * 122.56667 * 359.25787 * 26 21 20 28 28 C 1.46927 * 118.76152 * 53.55663 * 14 13 12 29 29 C 1.53043 * 109.45768 * 240.03662 * 2 1 3 30 30 H 1.09001 * 109.46621 * 300.03544 * 1 2 3 31 31 H 1.09000 * 109.46743 * 60.03414 * 1 2 3 32 32 H 1.08996 * 109.46870 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00443 * 119.95833 * 3 2 1 34 34 H 0.97000 * 119.99993 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.50232 * 301.33361 * 12 2 1 36 36 H 1.09000 * 109.50194 * 61.40275 * 12 2 1 37 37 H 1.08999 * 109.58477 * 65.16851 * 13 12 2 38 38 H 1.08999 * 109.58144 * 185.59538 * 13 12 2 39 39 H 1.09000 * 109.67990 * 309.31800 * 19 17 15 40 40 H 1.09009 * 109.68220 * 69.86328 * 19 17 15 41 41 H 1.08998 * 109.25186 * 188.60625 * 20 19 17 42 42 H 1.09004 * 109.21950 * 69.16508 * 20 19 17 43 43 H 1.07994 * 119.73334 * 0.56909 * 22 21 20 44 44 H 1.07999 * 120.11320 * 179.97438 * 23 22 21 45 45 H 1.07991 * 120.11579 * 179.86595 * 24 23 22 46 46 H 1.07990 * 119.72775 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.25160 * 257.50333 * 27 26 21 48 48 H 1.08994 * 109.22163 * 138.05050 * 27 26 21 49 49 H 1.09006 * 109.58398 * 186.62095 * 28 14 13 50 50 H 1.08997 * 109.58546 * 66.19854 * 28 14 13 51 51 H 1.09004 * 109.49590 * 298.56478 * 29 2 1 52 52 H 1.08999 * 109.49922 * 58.63146 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0179 1.3813 0.0000 4 6 1.6873 2.2243 -1.0273 5 1 1.0672 1.8705 -1.8378 6 6 2.1492 3.5333 -1.0271 7 7 2.9044 3.9645 -0.0392 8 14 1.6987 4.6829 -2.4289 9 1 0.2221 4.8235 -2.4988 10 1 2.3116 6.0148 -2.1932 11 1 2.2041 4.1245 -3.7088 12 6 2.0398 -0.7208 1.2501 13 6 3.5715 -0.6893 1.2646 14 7 4.0679 -1.2489 -0.0001 15 6 4.9624 -2.2570 -0.0001 16 8 5.2908 -2.7763 -1.0458 17 6 5.5544 -2.7391 1.2992 18 1 5.5165 -1.9394 2.0389 19 6 4.7657 -3.9516 1.8077 20 6 5.2295 -4.2670 3.2282 21 6 6.7312 -4.3690 3.2848 22 6 7.2955 -5.0018 4.3852 23 6 8.6651 -5.1164 4.5018 24 6 9.4839 -4.5981 3.5156 25 6 8.9255 -3.9722 2.4206 26 6 7.5463 -3.8568 2.3007 27 6 7.0040 -3.1659 1.0770 28 6 3.5714 -0.6886 -1.2643 29 6 2.0399 -0.7207 -1.2502 30 1 -0.3632 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 2.5750 1.6990 0.7278 34 1 3.2268 4.8793 -0.0388 35 1 1.6573 -0.2208 2.1398 36 1 1.6973 -1.7555 1.2386 37 1 3.9148 0.3400 1.3680 38 1 3.9412 -1.2857 2.0988 39 1 3.7004 -3.7210 1.8118 40 1 4.9536 -4.8091 1.1614 41 1 4.7926 -5.2133 3.5472 42 1 4.8976 -3.4740 3.8984 43 1 6.6567 -5.4069 5.1559 44 1 9.0965 -5.6094 5.3605 45 1 10.5570 -4.6828 3.6023 46 1 9.5656 -3.5681 1.6505 47 1 7.0516 -3.8482 0.2283 48 1 7.6095 -2.2850 0.8643 49 1 3.9417 -1.2846 -2.0985 50 1 3.9143 0.3409 -1.3673 51 1 1.6978 -1.7556 -1.2384 52 1 1.6568 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484924997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:50 Heat of formation + Delta-G solvation = -13.407647 kcal Electronic energy + Delta-G solvation = -30812.456815 eV Core-core repulsion = 26968.910598 eV Total energy + Delta-G solvation = -3843.546217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -40.69895 -39.57299 -37.89384 -35.85922 -34.49109 -32.72946 -32.32949 -31.11007 -30.23288 -29.16685 -28.92040 -27.69340 -24.60003 -23.99773 -23.38681 -22.82833 -22.31275 -22.22831 -20.10435 -19.05654 -17.99726 -17.12945 -17.07770 -16.58383 -15.88155 -15.38686 -15.07169 -14.94647 -14.54520 -14.46642 -14.06714 -13.84678 -13.78236 -13.68573 -13.41108 -13.29409 -13.03341 -12.80654 -12.69806 -12.46651 -12.30614 -12.14343 -11.61902 -11.60765 -11.53914 -11.32161 -11.23558 -11.05164 -10.93319 -10.88612 -10.79542 -10.68034 -10.54897 -10.34422 -10.11107 -9.75626 -9.56897 -9.30801 -8.93080 -8.91464 -8.68660 -8.18015 -6.97594 -5.78926 -3.06881 1.20130 1.21101 2.85122 3.31227 3.42254 3.47500 3.48011 3.58388 4.40377 4.43103 4.57118 4.67775 4.76284 4.82872 4.86837 4.96596 5.01108 5.10711 5.22046 5.31017 5.34059 5.38293 5.38916 5.46990 5.58369 5.61493 5.66559 5.72395 5.72684 5.79294 5.81748 5.84997 5.86097 5.94815 6.04622 6.06851 6.11793 6.19736 6.29463 6.33466 6.34715 6.36933 6.46936 6.51806 6.52148 6.65394 6.78223 6.85499 6.89689 7.04116 7.07813 7.69875 7.79636 8.39720 8.45906 9.51444 10.07567 10.42881 11.43686 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002606 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.583643 B =10740.918299 C =11118.375999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 N -0.716 5.716 4 C -0.231 4.231 5 H 0.070 0.930 6 C -0.012 4.012 7 N -0.934 5.934 8 Si 0.902 3.098 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.287 1.287 12 C -0.129 4.129 13 C 0.107 3.893 14 N -0.597 5.597 15 C 0.518 3.482 16 O -0.553 6.553 17 C -0.107 4.107 18 H 0.096 0.904 19 C -0.105 4.105 20 C -0.079 4.079 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.068 4.068 27 C -0.067 4.067 28 C 0.120 3.880 29 C -0.133 4.133 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.046 0.954 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -18.193 9.793 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 N -0.358 5.358 4 C -0.362 4.362 5 H 0.087 0.913 6 C -0.208 4.208 7 N -0.582 5.582 8 Si 0.733 3.267 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.213 1.213 12 C -0.167 4.167 13 C -0.016 4.016 14 N -0.328 5.328 15 C 0.305 3.695 16 O -0.432 6.432 17 C -0.129 4.129 18 H 0.114 0.886 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.138 4.138 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.068 4.068 27 C -0.104 4.104 28 C -0.001 4.001 29 C -0.173 4.173 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.065 0.935 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.126 -18.338 9.091 21.673 hybrid contribution -0.077 1.003 -0.454 1.104 sum 7.049 -17.335 8.637 20.611 Atomic orbital electron populations 1.22222 0.97640 0.98962 1.02121 1.19532 0.92096 0.86224 0.91525 1.42474 1.60734 1.05728 1.26883 1.19069 1.25415 0.91592 1.00152 0.91255 1.24678 1.00610 0.97354 0.98140 1.69627 1.39434 1.16840 1.32309 0.86352 0.77803 0.80494 0.82046 1.21419 1.21834 1.21338 1.22077 0.94642 1.00463 0.99559 1.21796 0.94863 0.99889 0.85019 1.48113 1.42244 1.34255 1.08223 1.20411 0.79126 0.79296 0.90649 1.90645 1.61829 1.56904 1.33809 1.21333 0.96109 0.99349 0.96062 0.88618 1.21465 0.99571 0.97172 0.96121 1.20484 0.91236 1.02545 0.97308 1.19635 0.95494 0.98315 0.94311 1.21139 0.95140 0.99878 0.97665 1.21042 0.93729 1.00527 0.99107 1.21050 0.99674 0.98843 0.94545 1.21172 0.94366 0.99860 0.98323 1.19626 0.93202 0.98284 0.95704 1.20351 0.93777 1.00559 0.95733 1.21580 0.94402 0.99569 0.84586 1.22292 0.95007 0.98964 1.01047 0.93169 0.92554 0.94622 0.78219 0.93550 0.90731 0.91897 0.90226 0.90531 0.90757 0.90774 0.90356 0.90220 0.86246 0.86290 0.86229 0.86098 0.88998 0.90428 0.90614 0.89584 0.93481 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.44 37.16 0.31 -2.27 16 2 C 0.20 3.53 0.74 -131.78 -0.10 3.43 16 3 N -0.72 -16.00 4.13 -47.19 -0.20 -16.20 16 4 C -0.23 -5.89 8.68 -15.06 -0.13 -6.02 16 5 H 0.07 1.74 6.70 -52.48 -0.35 1.39 16 6 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 7 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 8 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C -0.13 -1.88 4.96 -26.61 -0.13 -2.01 16 13 C 0.11 1.53 5.88 -3.70 -0.02 1.51 16 14 N -0.60 -9.55 2.97 -172.75 -0.51 -10.07 16 15 C 0.52 8.12 6.70 -10.99 -0.07 8.04 16 16 O -0.55 -10.45 15.50 5.55 0.09 -10.37 16 17 C -0.11 -1.29 1.73 -91.74 -0.16 -1.44 16 18 H 0.10 1.07 6.14 -51.93 -0.32 0.75 16 19 C -0.11 -1.07 5.21 -26.71 -0.14 -1.21 16 20 C -0.08 -0.68 5.67 -28.06 -0.16 -0.83 16 21 C -0.08 -0.78 5.74 -104.62 -0.60 -1.38 16 22 C -0.12 -1.08 9.61 -39.44 -0.38 -1.46 16 23 C -0.13 -1.09 10.05 -39.68 -0.40 -1.49 16 24 C -0.12 -1.11 10.05 -39.68 -0.40 -1.51 16 25 C -0.12 -1.21 9.61 -39.44 -0.38 -1.58 16 26 C -0.07 -0.75 5.74 -104.61 -0.60 -1.35 16 27 C -0.07 -0.79 4.81 -28.05 -0.13 -0.93 16 28 C 0.12 2.19 6.18 -3.71 -0.02 2.17 16 29 C -0.13 -2.34 4.71 -26.61 -0.13 -2.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.05 7.27 -51.93 -0.38 0.67 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.38 9.18 6.47 -40.82 -0.26 8.91 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.31 6.94 -51.93 -0.36 0.95 16 38 H 0.08 0.86 5.57 -51.93 -0.29 0.58 16 39 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 40 H 0.07 0.82 8.10 -51.92 -0.42 0.40 16 41 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.07 8.05 -52.49 -0.42 0.65 16 47 H 0.09 1.20 7.52 -51.93 -0.39 0.81 16 48 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 49 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 50 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 51 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -30.06 397.04 -11.22 -41.28 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.55 Total: 9.92 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.73 Total: -11.22 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.02 Total: -52.38 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.06 -11.22 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484924997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.873 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds