Wall clock time and date at job start Wed Apr 1 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.45950 * 2 1 4 4 C 1.36927 * 119.99962 * 60.00650 * 3 2 1 5 5 H 1.08004 * 120.00221 * 359.97438 * 4 3 2 6 6 C 1.38813 * 119.99941 * 179.97438 * 4 3 2 7 7 N 1.31617 * 120.00119 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99849 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46902 * 269.99719 * 8 6 4 10 10 H 1.48490 * 109.47162 * 29.99887 * 8 6 4 11 11 H 1.48505 * 109.46972 * 150.00231 * 8 6 4 12 12 C 1.53045 * 109.45906 * 119.97495 * 2 1 3 13 13 C 1.53164 * 109.32356 * 181.38271 * 12 2 1 14 14 N 1.46921 * 108.76966 * 305.35651 * 13 12 2 15 15 C 1.34775 * 120.62833 * 233.58878 * 14 13 12 16 16 O 1.21287 * 120.00437 * 174.62359 * 15 14 13 17 17 C 1.50705 * 120.00458 * 354.62489 * 15 14 13 18 18 H 1.09001 * 109.67401 * 334.18924 * 17 15 14 19 19 C 1.53315 * 109.68618 * 213.67169 * 17 15 14 20 20 C 1.52720 * 108.39358 * 170.44136 * 19 17 15 21 21 C 1.50632 * 110.61184 * 51.05396 * 20 19 17 22 22 C 1.38914 * 117.75045 * 162.57288 * 21 20 19 23 23 C 1.37932 * 120.54344 * 179.39341 * 22 21 20 24 24 C 1.38268 * 119.76969 * 0.05806 * 23 22 21 25 25 C 1.37927 * 119.77157 * 0.11236 * 24 23 22 26 26 C 1.37669 * 122.56371 * 342.24367 * 21 20 19 27 27 C 1.50628 * 122.56404 * 0.72051 * 26 21 20 28 28 C 1.46925 * 118.74213 * 53.61077 * 14 13 12 29 29 C 1.53040 * 109.45646 * 240.02796 * 2 1 3 30 30 H 1.08997 * 109.46939 * 59.99416 * 1 2 3 31 31 H 1.08993 * 109.46860 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46953 * 299.99986 * 1 2 3 33 33 H 0.96997 * 119.99441 * 239.99795 * 3 2 1 34 34 H 0.97002 * 120.00375 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.49642 * 301.31653 * 12 2 1 36 36 H 1.08995 * 109.49857 * 61.41775 * 12 2 1 37 37 H 1.09003 * 109.58868 * 185.57029 * 13 12 2 38 38 H 1.08998 * 109.71133 * 65.21251 * 13 12 2 39 39 H 1.09001 * 109.68099 * 290.13487 * 19 17 15 40 40 H 1.09004 * 109.68219 * 50.68586 * 19 17 15 41 41 H 1.09000 * 109.21872 * 290.78143 * 20 19 17 42 42 H 1.08999 * 109.23426 * 171.34389 * 20 19 17 43 43 H 1.08004 * 119.72652 * 359.40749 * 22 21 20 44 44 H 1.08000 * 120.11427 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.11162 * 180.13749 * 24 23 22 46 46 H 1.08005 * 119.72444 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.25330 * 221.94911 * 27 26 21 48 48 H 1.08998 * 109.22058 * 102.49623 * 27 26 21 49 49 H 1.09004 * 109.58593 * 186.60381 * 28 14 13 50 50 H 1.08997 * 109.70492 * 66.25017 * 28 14 13 51 51 H 1.08997 * 109.50075 * 298.57986 * 29 2 1 52 52 H 1.09003 * 109.50048 * 58.67952 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0661 1.8711 1.8369 6 6 2.1501 3.5330 1.0273 7 7 1.8317 4.3435 2.0142 8 14 3.2250 4.1438 -0.3731 9 1 4.6525 3.9014 -0.0434 10 1 2.8744 3.4168 -1.6195 11 1 3.0025 5.5989 -0.5695 12 6 2.0399 -0.7210 1.2500 13 6 3.5711 -0.6890 1.2644 14 7 4.0676 -1.2493 0.0002 15 6 4.9616 -2.2579 0.0004 16 8 5.2902 -2.7772 -1.0453 17 6 5.5530 -2.7406 1.2998 18 1 5.5316 -1.9354 2.0342 19 6 6.9999 -3.1934 1.0720 20 6 7.6451 -3.4480 2.4326 21 6 6.7794 -4.3538 3.2688 22 6 7.3650 -4.9800 4.3618 23 6 6.6225 -5.8116 5.1740 24 6 5.2846 -6.0253 4.8980 25 6 4.7023 -5.4072 3.8111 26 6 5.4485 -4.5703 2.9912 27 6 4.7505 -3.9320 1.8190 28 6 3.5714 -0.6890 -1.2641 29 6 2.0398 -0.7209 -1.2500 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5757 1.6986 -0.7275 34 1 2.1555 5.2579 2.0146 35 1 1.6575 -0.2209 2.1398 36 1 1.6976 -1.7557 1.2382 37 1 3.9413 -1.2850 2.0987 38 1 3.9164 0.3396 1.3687 39 1 7.0091 -4.1115 0.4844 40 1 7.5498 -2.4139 0.5445 41 1 7.7767 -2.4980 2.9506 42 1 8.6187 -3.9156 2.2865 43 1 8.4102 -4.8141 4.5776 44 1 7.0847 -6.2946 6.0222 45 1 4.6975 -6.6737 5.5315 46 1 3.6573 -5.5750 3.5960 47 1 3.7629 -3.5918 2.1305 48 1 4.6424 -4.6674 1.0218 49 1 3.9417 -1.2851 -2.0982 50 1 3.9145 0.3401 -1.3697 51 1 1.6976 -1.7557 -1.2383 52 1 1.6574 -0.2208 -2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484924998.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:57 Heat of formation + Delta-G solvation = -9.715235 kcal Electronic energy + Delta-G solvation = -31066.064699 eV Core-core repulsion = 27222.678597 eV Total energy + Delta-G solvation = -3843.386102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.75499 -39.64496 -38.03624 -35.85655 -34.61261 -32.84015 -32.33435 -31.13421 -30.31033 -29.74830 -29.07031 -27.77852 -24.69407 -23.73694 -23.35125 -22.99389 -22.33799 -22.19761 -20.12317 -19.07323 -17.98797 -17.81058 -17.08080 -16.65196 -15.88970 -15.67704 -14.99198 -14.89993 -14.58999 -14.49558 -14.31272 -13.88008 -13.76832 -13.63420 -13.49854 -13.40282 -13.13347 -12.95526 -12.64496 -12.53343 -12.25238 -12.16148 -11.93613 -11.66688 -11.59287 -11.39328 -11.29867 -11.09571 -11.03825 -10.97531 -10.88461 -10.78875 -10.59800 -10.35135 -10.19741 -9.82528 -9.51622 -9.42683 -8.98288 -8.92365 -8.71301 -8.32000 -7.30423 -5.80725 -3.16110 1.19544 1.20330 2.74664 3.20005 3.33177 3.36183 3.42654 3.57565 4.35319 4.44774 4.55033 4.64344 4.75571 4.80800 4.87720 4.96375 5.00006 5.09196 5.14145 5.22869 5.26604 5.31905 5.36889 5.42963 5.45362 5.51362 5.59752 5.60807 5.65680 5.69010 5.73632 5.83424 5.86360 5.92281 5.94085 6.02467 6.05941 6.12236 6.17499 6.28517 6.32291 6.34182 6.35120 6.40374 6.50066 6.52267 6.64325 6.70080 6.84645 6.94514 6.99180 7.66990 7.95064 8.34635 8.38662 9.16595 9.89630 10.09673 11.37440 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003031 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.403709 B = 9235.192798 C = 9346.784018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.204 3.796 3 N -0.742 5.742 4 C -0.236 4.236 5 H 0.092 0.908 6 C 0.006 3.994 7 N -0.933 5.933 8 Si 0.877 3.123 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.292 1.292 12 C -0.132 4.132 13 C 0.111 3.889 14 N -0.600 5.600 15 C 0.520 3.480 16 O -0.553 6.553 17 C -0.108 4.108 18 H 0.098 0.902 19 C -0.098 4.098 20 C -0.082 4.082 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.070 4.070 27 C -0.067 4.067 28 C 0.114 3.886 29 C -0.132 4.132 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.108 -19.764 2.555 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 N -0.386 5.386 4 C -0.366 4.366 5 H 0.110 0.890 6 C -0.189 4.189 7 N -0.581 5.581 8 Si 0.708 3.292 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.219 1.219 12 C -0.172 4.172 13 C -0.011 4.011 14 N -0.332 5.332 15 C 0.307 3.693 16 O -0.432 6.432 17 C -0.129 4.129 18 H 0.116 0.884 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.070 4.070 27 C -0.105 4.105 28 C -0.008 4.008 29 C -0.171 4.171 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.194 0.806 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.179 -19.900 2.205 21.628 hybrid contribution 0.599 0.766 -0.744 1.225 sum 8.778 -19.134 1.461 21.102 Atomic orbital electron populations 1.22189 0.96976 0.99251 1.02494 1.19485 0.92422 0.85030 0.91734 1.42893 1.61528 1.07688 1.26515 1.18960 1.26339 0.91415 0.99879 0.89009 1.24624 1.00538 0.96335 0.97431 1.69685 1.49717 1.06421 1.32301 0.86668 0.81155 0.78265 0.83105 1.21214 1.20404 1.21873 1.22261 0.94398 0.99270 1.01311 1.21817 0.95345 1.00096 0.83847 1.48168 1.42336 1.34543 1.08158 1.20480 0.78818 0.79183 0.90775 1.90647 1.61765 1.57009 1.33785 1.21354 0.96693 0.99111 0.95768 0.88422 1.21372 0.93208 1.02533 0.96510 1.20518 0.97818 0.98752 0.94767 1.19651 0.93545 0.98084 0.96171 1.21147 0.99894 0.97706 0.95127 1.21054 0.94483 0.99014 0.99652 1.21050 0.95249 1.00181 0.97655 1.21155 0.99877 0.97315 0.95204 1.19531 0.93229 0.97709 0.96553 1.20368 0.98268 0.96072 0.95767 1.21531 0.94274 0.98780 0.86236 1.22130 0.94864 1.00827 0.99255 0.93178 0.94363 0.91994 0.80606 0.93116 0.90050 0.93077 0.90818 0.89467 0.90620 0.90970 0.90286 0.90388 0.86231 0.86248 0.86167 0.86072 0.90024 0.89860 0.89670 0.91487 0.91444 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.44 37.16 0.31 -2.21 16 2 C 0.20 3.51 0.74 -131.77 -0.10 3.41 16 3 N -0.74 -15.72 3.94 -47.19 -0.19 -15.91 16 4 C -0.24 -6.01 9.16 -15.06 -0.14 -6.15 16 5 H 0.09 2.51 6.93 -52.48 -0.36 2.15 16 6 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 7 N -0.93 -28.01 13.97 55.49 0.78 -27.23 16 8 Si 0.88 21.26 27.74 -169.99 -4.71 16.54 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 C -0.13 -2.09 4.71 -26.62 -0.13 -2.21 16 13 C 0.11 1.69 5.89 -3.73 -0.02 1.66 16 14 N -0.60 -9.12 2.97 -172.78 -0.51 -9.63 16 15 C 0.52 7.78 6.69 -10.98 -0.07 7.70 16 16 O -0.55 -9.82 15.86 5.55 0.09 -9.73 16 17 C -0.11 -1.29 1.72 -91.74 -0.16 -1.45 16 18 H 0.10 1.13 6.19 -51.93 -0.32 0.81 16 19 C -0.10 -1.09 4.80 -26.71 -0.13 -1.21 16 20 C -0.08 -0.76 5.67 -28.06 -0.16 -0.92 16 21 C -0.07 -0.77 5.74 -104.61 -0.60 -1.37 16 22 C -0.12 -1.12 9.61 -39.44 -0.38 -1.50 16 23 C -0.12 -1.09 10.05 -39.68 -0.40 -1.49 16 24 C -0.12 -1.11 10.05 -39.68 -0.40 -1.51 16 25 C -0.12 -1.16 9.61 -39.45 -0.38 -1.53 16 26 C -0.07 -0.75 5.74 -104.62 -0.60 -1.35 16 27 C -0.07 -0.74 4.92 -28.05 -0.14 -0.87 16 28 C 0.11 1.79 6.17 -3.71 -0.02 1.76 16 29 C -0.13 -1.99 4.96 -26.61 -0.13 -2.12 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 33 H 0.36 7.75 4.32 -40.82 -0.18 7.58 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.08 1.42 7.31 -51.93 -0.38 1.04 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.95 5.33 -51.93 -0.28 0.67 16 38 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 39 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.62 8.13 -51.93 -0.42 0.19 16 43 H 0.12 0.88 8.05 -52.48 -0.42 0.46 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.02 8.05 -52.48 -0.42 0.59 16 47 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 48 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 49 H 0.08 1.33 7.00 -51.93 -0.36 0.96 16 50 H 0.07 1.12 6.94 -51.93 -0.36 0.76 16 51 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -30.63 394.10 -10.86 -41.49 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.51 Total: 9.81 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.73 Total: -11.27 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.08 Total: -52.77 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.63 -10.86 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484924998.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds