Wall clock time and date at job start Wed Apr 1 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00363 * 2 1 4 4 H 1.07998 * 119.99662 * 32.50720 * 3 2 1 5 5 C 1.38814 * 119.99981 * 212.50184 * 3 2 1 6 6 N 1.31613 * 120.00039 * 26.68859 * 5 3 2 7 7 Si 1.86796 * 120.00000 * 206.68855 * 5 3 2 8 8 H 1.48504 * 109.47223 * 65.04415 * 7 5 3 9 9 H 1.48502 * 109.47486 * 185.04349 * 7 5 3 10 10 H 1.48501 * 109.47371 * 305.04350 * 7 5 3 11 11 C 1.46506 * 119.99705 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47003 * 279.16710 * 11 2 1 13 13 H 1.09002 * 110.00305 * 65.33785 * 12 11 2 14 14 C 1.54315 * 109.77263 * 186.49429 * 12 11 2 15 15 C 1.55160 * 102.86544 * 141.88246 * 14 12 11 16 16 C 1.54907 * 101.57969 * 324.29896 * 15 14 12 17 17 N 1.47026 * 109.88207 * 304.23647 * 12 11 2 18 18 C 1.34778 * 125.64604 * 61.68111 * 17 12 11 19 19 O 1.21285 * 119.99858 * 0.18519 * 18 17 12 20 20 C 1.50694 * 120.00203 * 180.18324 * 18 17 12 21 21 H 1.09001 * 115.56051 * 53.85534 * 20 18 17 22 22 C 1.53004 * 117.50009 * 268.17166 * 20 18 17 23 23 C 1.52996 * 117.50045 * 199.55044 * 20 18 17 24 24 C 1.53002 * 117.49720 * 214.97858 * 23 20 18 25 25 C 1.50704 * 117.50017 * 359.96991 * 23 20 18 26 26 C 1.38233 * 120.00114 * 242.94526 * 25 23 20 27 27 C 1.38239 * 119.99466 * 179.80774 * 26 25 23 28 28 C 1.38240 * 120.00159 * 0.42484 * 27 26 25 29 29 C 1.38235 * 119.99923 * 359.80844 * 28 27 26 30 30 C 1.38238 * 120.00227 * 0.02562 * 29 28 27 31 31 H 1.08995 * 109.47449 * 269.05862 * 1 2 3 32 32 H 1.09004 * 109.46988 * 29.05470 * 1 2 3 33 33 H 1.08999 * 109.47468 * 149.05191 * 1 2 3 34 34 H 0.96997 * 120.00054 * 184.97509 * 6 5 3 35 35 H 1.09000 * 109.47285 * 159.16163 * 11 2 1 36 36 H 1.09002 * 109.46771 * 39.16113 * 11 2 1 37 37 H 1.09000 * 110.92860 * 23.46254 * 14 12 11 38 38 H 1.09007 * 110.74305 * 260.21319 * 14 12 11 39 39 H 1.09000 * 110.99807 * 206.22835 * 15 14 12 40 40 H 1.09000 * 111.00131 * 82.37729 * 15 14 12 41 41 H 1.08997 * 110.37223 * 278.17351 * 16 15 14 42 42 H 1.09003 * 110.45686 * 155.89330 * 16 15 14 43 43 H 1.09001 * 117.49179 * 359.97438 * 22 20 18 44 44 H 1.08992 * 117.49797 * 145.01774 * 22 20 18 45 45 H 1.09000 * 109.47124 * 65.48842 * 24 23 20 46 46 H 1.09003 * 109.47032 * 185.48223 * 24 23 20 47 47 H 1.08998 * 109.47184 * 305.48460 * 24 23 20 48 48 H 1.07995 * 120.00304 * 0.02562 * 26 25 23 49 49 H 1.07994 * 119.99648 * 180.20963 * 27 26 25 50 50 H 1.07997 * 119.99755 * 179.78957 * 28 27 26 51 51 H 1.08003 * 120.00071 * 179.97438 * 29 28 27 52 52 H 1.08000 * 120.00137 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7366 2.0479 0.5026 5 6 3.3748 1.2799 -0.6460 6 7 3.6482 0.4836 -1.6575 7 14 4.6353 2.5367 -0.0795 8 1 5.0865 2.2005 1.2948 9 1 5.7998 2.5199 -1.0008 10 1 4.0217 3.8890 -0.0821 11 6 2.1974 -1.2688 0.0006 12 6 2.2534 -1.8247 1.4249 13 1 1.2500 -2.0820 1.7644 14 6 3.1594 -3.0734 1.4627 15 6 3.8958 -2.9248 2.8203 16 6 4.0801 -1.3893 2.9077 17 7 2.8465 -0.8275 2.3279 18 6 2.3428 0.3954 2.5871 19 8 1.3114 0.7512 2.0573 20 6 3.0610 1.3207 3.5352 21 1 4.1102 1.5071 3.3060 22 6 2.6579 1.2727 5.0104 23 6 2.2565 2.4697 4.1462 24 6 2.9862 3.7924 4.3887 25 6 0.8065 2.5899 3.7534 26 6 0.3650 3.7100 3.0742 27 6 -0.9643 3.8184 2.7104 28 6 -1.8537 2.8106 3.0335 29 6 -1.4131 1.6927 3.7169 30 6 -0.0831 1.5827 4.0777 31 1 -0.3634 -0.0169 1.0275 32 1 -0.3633 0.8984 -0.4991 33 1 -0.3634 -0.8813 -0.5285 34 1 4.5295 0.4990 -2.0625 35 1 3.2109 -1.1035 -0.3651 36 1 1.6889 -1.9821 -0.6481 37 1 3.8694 -3.0644 0.6358 38 1 2.5616 -3.9848 1.4460 39 1 4.8597 -3.4335 2.7995 40 1 3.2797 -3.2919 3.6412 41 1 4.9483 -1.0776 2.3271 42 1 4.1873 -1.0770 3.9466 43 1 1.8729 0.5720 5.2950 44 1 3.4418 1.4274 5.7516 45 1 3.2797 4.2261 3.4327 46 1 2.3241 4.4819 4.9125 47 1 3.8747 3.6116 4.9937 48 1 1.0592 4.4988 2.8248 49 1 -1.3085 4.6919 2.1769 50 1 -2.8928 2.8969 2.7522 51 1 -2.1080 0.9056 3.9697 52 1 0.2610 0.7095 4.6120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485065768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:15 Heat of formation + Delta-G solvation = 86.077386 kcal Electronic energy + Delta-G solvation = -33551.614678 eV Core-core repulsion = 29712.382456 eV Total energy + Delta-G solvation = -3839.232222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.14491 -38.76909 -37.08715 -35.79899 -34.70561 -31.21137 -30.94156 -30.59345 -29.93758 -29.35171 -28.23593 -25.53040 -24.87560 -24.01956 -22.78175 -22.14961 -21.71723 -20.66490 -20.28546 -19.00151 -17.97778 -16.84781 -16.57484 -16.00757 -15.68108 -14.91983 -14.65866 -14.40109 -14.14502 -13.81530 -13.52122 -13.45732 -13.14649 -13.09839 -13.01317 -12.85549 -12.65866 -12.65050 -12.10196 -11.92637 -11.70770 -11.63571 -11.59135 -11.42325 -11.16984 -10.94056 -10.84410 -10.69148 -10.55425 -10.55169 -10.49946 -10.29096 -9.98128 -9.87112 -9.81056 -9.67298 -9.47537 -8.58173 -8.31235 -8.14013 -7.81830 -7.41547 -6.13909 -5.48990 -2.93671 1.88950 1.98632 3.42738 3.50950 3.52408 3.57203 3.91486 4.13061 4.45944 4.71730 4.86214 4.98001 4.99597 5.04974 5.14658 5.20889 5.31068 5.44006 5.45639 5.52299 5.53091 5.75281 5.78672 5.79625 5.83326 5.87159 5.90221 5.96095 5.99545 6.02609 6.08811 6.16574 6.18201 6.26472 6.31612 6.32749 6.41070 6.53511 6.55524 6.60641 6.69061 6.81290 6.90845 6.99782 7.01995 7.15841 7.18893 7.29696 7.51719 7.54928 7.75918 8.15371 8.66355 8.79138 9.45209 9.55505 10.15637 10.74206 11.47962 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.006250 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.566036 B = 4478.577010 C = 4763.128693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.569 5.569 3 C -0.190 4.190 4 H 0.066 0.934 5 C -0.009 4.009 6 N -0.896 5.896 7 Si 0.867 3.133 8 H -0.288 1.288 9 H -0.297 1.297 10 H -0.284 1.284 11 C 0.142 3.858 12 C 0.121 3.879 13 H 0.049 0.951 14 C -0.127 4.127 15 C -0.131 4.131 16 C 0.105 3.895 17 N -0.603 5.603 18 C 0.547 3.453 19 O -0.441 6.441 20 C -0.153 4.153 21 H 0.115 0.885 22 C -0.160 4.160 23 C -0.064 4.064 24 C -0.113 4.113 25 C -0.008 4.008 26 C -0.106 4.106 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.116 4.116 30 C -0.088 4.088 31 H 0.016 0.984 32 H 0.025 0.975 33 H 0.002 0.998 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.109 0.891 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -2.031 14.467 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.289 5.289 3 C -0.320 4.320 4 H 0.083 0.917 5 C -0.206 4.206 6 N -0.542 5.542 7 Si 0.698 3.302 8 H -0.216 1.216 9 H -0.223 1.223 10 H -0.210 1.210 11 C 0.014 3.986 12 C 0.015 3.985 13 H 0.067 0.933 14 C -0.166 4.166 15 C -0.169 4.169 16 C -0.019 4.019 17 N -0.340 5.340 18 C 0.332 3.668 19 O -0.309 6.309 20 C -0.175 4.175 21 H 0.133 0.867 22 C -0.197 4.197 23 C -0.064 4.064 24 C -0.170 4.170 25 C -0.008 4.008 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.134 4.134 30 C -0.106 4.106 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.130 0.870 49 H 0.130 0.870 50 H 0.128 0.872 51 H 0.127 0.873 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.556 -1.643 13.999 14.325 hybrid contribution 1.255 0.435 0.056 1.330 sum -1.300 -1.208 14.056 14.167 Atomic orbital electron populations 1.20894 0.85585 0.96619 0.97082 1.43456 0.99618 1.01462 1.84395 1.19069 1.01065 0.89968 1.21948 0.91658 1.24770 1.01642 0.98244 0.95917 1.70211 1.20469 1.42717 1.20789 0.86837 0.82556 0.82617 0.78211 1.21561 1.22343 1.21045 1.21235 1.00632 0.86765 0.90017 1.22375 0.94583 0.86696 0.94798 0.93268 1.22660 0.99041 0.97636 0.97268 1.22700 1.00505 0.95648 0.98022 1.22085 0.89129 0.92966 0.97722 1.47963 1.24914 1.15057 1.46082 1.18426 0.86170 0.79947 0.82234 1.90834 1.22854 1.72053 1.45203 1.22467 1.00406 1.00066 0.94514 0.86724 1.23227 1.03156 1.00746 0.92550 1.20143 0.92766 0.90854 1.02680 1.21337 0.99191 0.94669 1.01839 1.18614 0.91516 0.94092 0.96609 1.20738 0.95450 0.97856 0.98411 1.20908 0.93627 0.98908 1.00148 1.20897 0.98988 0.94719 0.99944 1.20835 0.95586 0.97480 0.99494 1.20667 0.93060 0.97229 0.99631 0.96582 0.95662 0.97895 0.94517 0.88732 0.96067 0.90664 0.91330 0.90913 0.91434 0.92611 0.91920 0.88445 0.88352 0.91840 0.91765 0.92318 0.86960 0.87006 0.87200 0.87270 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.44 9.86 59.85 0.59 4.03 16 2 N -0.57 -14.61 1.63 -181.12 -0.29 -14.90 16 3 C -0.19 -5.29 6.03 -15.06 -0.09 -5.38 16 4 H 0.07 1.95 6.94 -52.49 -0.36 1.59 16 5 C -0.01 -0.27 4.76 -17.43 -0.08 -0.35 16 6 N -0.90 -26.61 11.60 55.49 0.64 -25.97 16 7 Si 0.87 22.21 29.63 -169.99 -5.04 17.17 16 8 H -0.29 -7.05 6.88 56.52 0.39 -6.66 16 9 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 11 C 0.14 3.34 4.87 -4.04 -0.02 3.32 16 12 C 0.12 2.33 3.32 -66.96 -0.22 2.11 16 13 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.13 -1.92 6.47 -24.90 -0.16 -2.08 16 15 C -0.13 -1.67 7.08 -24.58 -0.17 -1.84 16 16 C 0.11 1.62 6.69 -2.53 -0.02 1.60 16 17 N -0.60 -11.46 3.07 -163.02 -0.50 -11.96 16 18 C 0.55 11.04 5.44 -10.99 -0.06 10.98 16 19 O -0.44 -9.88 5.67 5.55 0.03 -9.85 16 20 C -0.15 -2.67 4.82 -91.77 -0.44 -3.11 16 21 H 0.11 2.08 7.92 -51.93 -0.41 1.67 16 22 C -0.16 -2.16 9.22 -26.73 -0.25 -2.41 16 23 C -0.06 -1.01 2.58 -155.66 -0.40 -1.41 16 24 C -0.11 -1.54 8.68 37.16 0.32 -1.21 16 25 C -0.01 -0.14 3.85 -104.62 -0.40 -0.54 16 26 C -0.11 -1.83 9.26 -39.58 -0.37 -2.19 16 27 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 28 C -0.13 -1.98 10.05 -39.58 -0.40 -2.37 16 29 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 30 C -0.09 -1.46 7.10 -39.58 -0.28 -1.74 16 31 H 0.02 0.39 6.66 -51.93 -0.35 0.04 16 32 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.00 0.06 8.00 -51.93 -0.42 -0.36 16 34 H 0.24 7.13 8.32 -40.82 -0.34 6.79 16 35 H 0.09 2.52 5.39 -51.93 -0.28 2.24 16 36 H 0.02 0.50 8.03 -51.93 -0.42 0.08 16 37 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.84 7.70 -51.93 -0.40 0.44 16 43 H 0.10 1.30 6.12 -51.93 -0.32 0.99 16 44 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 45 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 46 H 0.06 0.77 8.04 -51.93 -0.42 0.36 16 47 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 48 H 0.11 1.84 7.23 -52.49 -0.38 1.46 16 49 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 50 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 51 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 52 H 0.11 1.69 5.96 -52.49 -0.31 1.38 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -31.85 393.97 -11.13 -42.98 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.66 Total: 3.73 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -3.25 Total: -7.14 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.15 Total: -52.83 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.03 Total: -9.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.04 Total: 17.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.85 -11.13 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485065768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.053 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds