Wall clock time and date at job start Wed Apr 1 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 110.91228 * 2 1 4 4 C 1.54904 * 111.00673 * 236.09886 * 2 1 3 5 5 N 1.47424 * 104.83202 * 204.91642 * 4 2 1 6 6 C 1.36935 * 125.64574 * 204.09114 * 5 4 2 7 7 H 1.08002 * 120.00524 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99915 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99909 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47275 * 60.00136 * 10 8 6 12 12 H 1.48501 * 109.47022 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47407 * 300.00054 * 10 8 6 14 14 C 1.47021 * 108.70559 * 24.12845 * 5 4 2 15 15 C 1.54330 * 107.26915 * 358.94032 * 14 5 4 16 16 H 1.08999 * 110.71980 * 219.26889 * 15 14 5 17 17 N 1.46497 * 110.71646 * 96.17035 * 15 14 5 18 18 C 1.34785 * 119.99632 * 86.18197 * 17 15 14 19 19 O 1.21278 * 119.99918 * 0.26656 * 18 17 15 20 20 C 1.50699 * 119.99335 * 180.27175 * 18 17 15 21 21 C 1.53009 * 109.46737 * 173.67041 * 20 18 17 22 22 C 1.50701 * 115.54782 * 294.54469 * 21 20 18 23 23 C 1.38235 * 119.99854 * 113.99097 * 22 21 20 24 24 C 1.38236 * 119.99867 * 179.78323 * 23 22 21 25 25 C 1.38243 * 119.99729 * 0.44672 * 24 23 22 26 26 C 1.38233 * 119.99733 * 359.80376 * 25 24 23 27 27 C 1.38228 * 119.99977 * 294.26003 * 22 21 20 28 28 C 1.52995 * 117.49794 * 148.87086 * 21 20 18 29 29 C 1.52999 * 117.49822 * 80.20952 * 21 20 18 30 30 H 1.09003 * 109.47472 * 296.09658 * 1 2 3 31 31 H 1.09004 * 109.47292 * 56.10129 * 1 2 3 32 32 H 1.09004 * 109.46589 * 176.09717 * 1 2 3 33 33 H 1.09004 * 109.46885 * 183.90245 * 3 2 1 34 34 H 1.08997 * 109.47265 * 303.90276 * 3 2 1 35 35 H 1.09003 * 109.47205 * 63.90430 * 3 2 1 36 36 H 1.08997 * 110.36806 * 86.07349 * 4 2 1 37 37 H 1.09004 * 110.46042 * 323.79955 * 4 2 1 38 38 H 0.97004 * 119.99916 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.88261 * 239.52784 * 14 5 4 40 40 H 1.08994 * 109.88123 * 118.35979 * 14 5 4 41 41 H 0.97000 * 120.00274 * 266.44826 * 17 15 14 42 42 H 1.08993 * 109.47436 * 293.66633 * 20 18 17 43 43 H 1.08998 * 109.47287 * 53.67749 * 20 18 17 44 44 H 1.07999 * 120.00219 * 0.02562 * 23 22 21 45 45 H 1.08003 * 120.00211 * 180.27558 * 24 23 22 46 46 H 1.07997 * 119.99357 * 179.83666 * 25 24 23 47 47 H 1.08000 * 119.99461 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.00301 * 359.97438 * 27 22 21 49 49 H 1.08994 * 117.49988 * 0.02562 * 28 21 20 50 50 H 1.09009 * 117.49541 * 145.02332 * 28 21 20 51 51 H 1.08992 * 117.50093 * 214.98032 * 29 21 20 52 52 H 1.09005 * 117.50026 * 0.02562 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7732 6 6 4.4640 -1.5666 -1.6071 7 1 4.3334 -1.5116 -2.6778 8 6 5.6831 -1.9653 -1.0762 9 7 5.8422 -2.0328 0.2286 10 14 7.0978 -2.4061 -2.2137 11 1 7.4401 -1.2319 -3.0559 12 1 8.2801 -2.7971 -1.4047 13 1 6.6977 -3.5402 -3.0848 14 6 3.4674 -1.2741 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 2.1919 -0.1724 2.0815 17 7 1.2268 -1.9574 1.4962 18 6 1.2847 -2.5503 2.7052 19 8 2.0446 -2.1291 3.5514 20 6 0.4052 -3.7366 3.0054 21 6 0.7753 -4.3125 4.3739 22 6 2.1556 -4.9086 4.4765 23 6 3.1038 -4.3198 5.2921 24 6 4.3685 -4.8692 5.3897 25 6 4.6879 -6.0019 4.6644 26 6 3.7412 -6.5875 3.8448 27 6 2.4752 -6.0407 3.7507 28 6 -0.3404 -4.9695 5.1889 29 6 0.2164 -3.6077 5.6115 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0699 34 1 1.6703 1.9732 -0.8529 35 1 1.7835 1.9300 0.9229 36 1 2.1559 -0.1720 -2.0836 37 1 1.4525 -1.6704 -1.4043 38 1 6.6942 -2.3110 0.5995 39 1 4.2425 -0.5996 1.0600 40 1 3.6651 -2.2893 1.0401 41 1 0.6191 -2.2943 0.8194 42 1 -0.6384 -3.4224 3.0137 43 1 0.5492 -4.4988 2.2396 44 1 2.8552 -3.4330 5.8561 45 1 5.1080 -4.4118 6.0304 46 1 5.6768 -6.4295 4.7387 47 1 3.9907 -7.4727 3.2786 48 1 1.7356 -6.4984 3.1104 49 1 -1.3379 -4.9920 4.7502 50 1 -0.0759 -5.8328 5.7998 51 1 0.8468 -3.5755 6.5000 52 1 -0.4153 -2.7340 5.4509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485571811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:23 Heat of formation + Delta-G solvation = 38.696504 kcal Electronic energy + Delta-G solvation = -31301.233930 eV Core-core repulsion = 27459.947119 eV Total energy + Delta-G solvation = -3841.286811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.13249 -39.18758 -37.81698 -36.63887 -33.78138 -32.88256 -30.72345 -30.65080 -30.33274 -29.59714 -27.70358 -26.60833 -25.58178 -23.53267 -22.95288 -22.86610 -21.62734 -20.75080 -19.82506 -19.22267 -18.53278 -16.91531 -16.71291 -16.41352 -15.74847 -15.32946 -14.89019 -14.65903 -14.45346 -14.30340 -13.96845 -13.86197 -13.68276 -13.41745 -13.20056 -13.10275 -12.51311 -12.39593 -12.24228 -12.06933 -11.94258 -11.76289 -11.62537 -11.50087 -11.33135 -11.04033 -10.96732 -10.90698 -10.83104 -10.73485 -10.39939 -10.34687 -10.20009 -9.94351 -9.90125 -9.83574 -9.59470 -9.24181 -8.58920 -8.57156 -8.38370 -8.28730 -6.77000 -5.63189 -2.98330 1.63536 1.73701 3.18050 3.43059 3.47184 3.49284 3.50287 3.92445 4.11392 4.54094 4.61035 4.76095 4.89004 4.95654 5.01949 5.24425 5.27587 5.29976 5.33689 5.40037 5.41487 5.55531 5.58151 5.59295 5.64933 5.68785 5.82540 5.84873 5.87297 5.91471 5.94279 5.99801 6.06593 6.11355 6.18887 6.23719 6.28650 6.30185 6.34226 6.44398 6.62305 6.64962 6.71995 6.75605 6.81576 6.84162 6.92799 7.03369 7.30208 7.61227 7.73505 7.90638 8.08097 8.31983 8.80347 9.27559 9.88407 10.54184 11.46746 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009128 B = 0.004444 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.772475 B = 6299.236448 C = 8580.878515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.125 4.125 4 C 0.145 3.855 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.076 0.924 8 C -0.005 4.005 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.178 3.822 15 C 0.127 3.873 16 H 0.084 0.916 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.526 6.526 20 C -0.101 4.101 21 C -0.064 4.064 22 C -0.041 4.041 23 C -0.083 4.083 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.170 4.170 29 C -0.156 4.156 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.014 0.986 38 H 0.252 0.748 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.392 0.608 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 -4.108 8.626 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.052 3.948 15 C 0.022 3.978 16 H 0.102 0.898 17 N -0.367 5.367 18 C 0.297 3.703 19 O -0.402 6.402 20 C -0.141 4.141 21 C -0.064 4.064 22 C -0.041 4.041 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.131 4.131 28 C -0.207 4.207 29 C -0.193 4.193 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.227 0.773 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.265 -3.871 9.277 16.644 hybrid contribution 0.666 -0.442 -1.156 1.405 sum -12.600 -4.313 8.121 15.598 Atomic orbital electron populations 1.21666 0.94846 1.00991 1.01238 1.21999 0.94339 0.96016 0.96788 1.21591 1.02502 0.93802 1.00400 1.21607 0.87866 0.94443 0.94254 1.44428 1.07570 1.78958 1.01918 1.18953 0.89473 1.38789 0.88819 0.90663 1.24796 0.97752 1.01748 0.95884 1.69965 1.24187 1.52972 1.09072 0.86265 0.82126 0.78217 0.79514 1.21217 1.21654 1.21295 1.21487 0.89719 1.00420 0.83126 1.22393 0.92423 0.86312 0.96625 0.89824 1.46036 1.42893 1.33202 1.14532 1.20328 0.83597 0.84188 0.82206 1.90687 1.38800 1.64151 1.46559 1.21201 0.99654 0.96824 0.96465 1.19617 0.91769 1.03005 0.92031 1.18817 0.93364 0.94632 0.97271 1.20955 0.92752 0.98254 0.98168 1.21110 0.96589 0.96239 1.00080 1.21089 0.99012 0.96561 0.97224 1.21019 0.93616 1.00343 0.99148 1.20866 0.96709 0.96168 0.99395 1.23137 0.97251 0.97045 1.03245 1.22946 1.02932 0.95260 0.98154 0.92922 0.92753 0.93086 0.91240 0.92975 0.93420 0.94288 0.96859 0.93705 0.93197 0.93380 0.77339 0.89008 0.88911 0.86041 0.86440 0.86564 0.86485 0.86622 0.88662 0.88697 0.88614 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.22 37.16 0.31 -1.35 16 2 C -0.09 -1.50 0.83 -152.36 -0.13 -1.62 16 3 C -0.13 -2.03 8.57 37.16 0.32 -1.71 16 4 C 0.14 2.89 6.14 -2.53 -0.02 2.87 16 5 N -0.60 -15.21 3.38 -170.07 -0.57 -15.78 16 6 C -0.23 -6.49 10.28 -15.06 -0.15 -6.65 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 10 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.18 4.44 4.79 -3.06 -0.01 4.43 16 15 C 0.13 2.44 2.51 -66.09 -0.17 2.28 16 16 H 0.08 1.68 7.61 -51.93 -0.40 1.29 16 17 N -0.71 -11.78 4.57 -52.03 -0.24 -12.02 16 18 C 0.51 8.57 7.64 -10.98 -0.08 8.49 16 19 O -0.53 -10.68 14.41 5.56 0.08 -10.60 16 20 C -0.10 -1.27 5.52 -27.88 -0.15 -1.42 16 21 C -0.06 -0.81 1.19 -155.66 -0.19 -0.99 16 22 C -0.04 -0.61 4.46 -104.63 -0.47 -1.08 16 23 C -0.08 -1.32 8.36 -39.58 -0.33 -1.65 16 24 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 25 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 26 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 27 C -0.11 -1.65 9.66 -39.59 -0.38 -2.03 16 28 C -0.17 -1.67 9.93 -26.69 -0.26 -1.93 16 29 C -0.16 -1.77 9.32 -26.69 -0.25 -2.02 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.60 6.38 -51.93 -0.33 0.27 16 33 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.01 0.27 7.99 -51.93 -0.41 -0.15 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 40 H 0.05 1.40 7.40 -51.93 -0.38 1.01 16 41 H 0.39 5.56 6.90 -40.82 -0.28 5.28 16 42 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 44 H 0.12 1.90 7.05 -52.49 -0.37 1.53 16 45 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 46 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 48 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 51 H 0.10 1.10 7.16 -51.93 -0.37 0.72 16 52 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 412.00 15.07 6.21 6.21 Total: -1.00 -33.19 412.00 -11.03 -44.22 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.80 Total: 8.89 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.26 Total: -11.28 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.24 Total: -54.94 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.19 -11.03 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485571811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.918 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds