Wall clock time and date at job start Wed Apr 1 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38256 * 119.99856 * 2 1 4 4 C 1.38215 * 119.99671 * 179.74423 * 3 2 1 5 5 C 1.38254 * 120.00276 * 0.56052 * 4 3 2 6 6 C 1.38212 * 119.99665 * 359.69441 * 5 4 3 7 7 C 1.38216 * 120.00000 * 180.28286 * 2 1 3 8 8 C 1.50697 * 119.99723 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47507 * 354.88077 * 8 7 2 10 10 C 1.52996 * 109.47148 * 114.88544 * 8 7 2 11 11 C 1.53005 * 109.46836 * 234.88229 * 8 7 2 12 12 C 1.50699 * 109.46800 * 175.00366 * 11 8 7 13 13 O 1.21281 * 120.00597 * 0.02562 * 12 11 8 14 14 N 1.34784 * 119.99927 * 179.97438 * 12 11 8 15 15 C 1.46498 * 119.99972 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47216 * 180.02562 * 15 14 12 17 17 H 1.09004 * 115.51033 * 330.58447 * 16 15 14 18 18 C 1.52999 * 117.44396 * 185.16639 * 16 15 14 19 19 H 1.08997 * 119.53534 * 4.11834 * 18 16 15 20 20 C 1.54387 * 118.11910 * 160.81048 * 18 16 15 21 21 N 1.48004 * 104.65115 * 87.21985 * 20 18 16 22 22 C 1.36936 * 127.84265 * 140.40170 * 21 20 18 23 23 H 1.08007 * 119.99890 * 196.97643 * 22 21 20 24 24 C 1.38810 * 120.00166 * 16.97703 * 22 21 20 25 25 N 1.31622 * 120.00026 * 9.40909 * 24 22 21 26 26 Si 1.86802 * 120.00098 * 189.40712 * 24 22 21 27 27 H 1.48497 * 109.47224 * 59.99933 * 26 24 22 28 28 H 1.48494 * 109.47047 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47123 * 299.99766 * 26 24 22 30 30 C 1.48148 * 104.32170 * 320.45579 * 21 20 18 31 31 C 1.53002 * 117.44270 * 115.99574 * 16 15 14 32 32 H 1.08997 * 119.53680 * 355.88366 * 31 16 15 33 33 H 1.09002 * 109.47441 * 264.32001 * 1 2 3 34 34 H 1.09002 * 109.47474 * 144.32500 * 1 2 3 35 35 H 1.09005 * 109.47728 * 24.31929 * 1 2 3 36 36 H 1.08001 * 120.00322 * 0.02562 * 3 2 1 37 37 H 1.08003 * 119.99675 * 180.27773 * 4 3 2 38 38 H 1.07996 * 120.00451 * 179.72458 * 5 4 3 39 39 H 1.08005 * 120.00038 * 180.02562 * 6 5 4 40 40 H 1.09002 * 109.47298 * 59.99405 * 10 8 7 41 41 H 1.08998 * 109.47459 * 179.97438 * 10 8 7 42 42 H 1.09003 * 109.46881 * 299.99612 * 10 8 7 43 43 H 1.09001 * 109.46874 * 294.99765 * 11 8 7 44 44 H 1.08996 * 109.47386 * 55.00693 * 11 8 7 45 45 H 0.97004 * 119.99915 * 0.02562 * 14 12 11 46 46 H 1.09005 * 109.47373 * 299.99921 * 15 14 12 47 47 H 1.09002 * 109.47185 * 60.00108 * 15 14 12 48 48 H 1.09004 * 110.40572 * 205.97746 * 20 18 16 49 49 H 1.09004 * 110.40927 * 328.40133 * 20 18 16 50 50 H 0.96994 * 120.00166 * 180.02562 * 25 24 22 51 51 H 1.09011 * 110.40232 * 280.75314 * 30 21 20 52 52 H 1.08996 * 110.41365 * 158.32148 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 0.0053 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1969 -0.0064 7 6 2.1980 -1.1970 -0.0059 8 6 1.4445 -2.5020 -0.0118 9 1 0.3764 -2.3053 0.0813 10 6 1.7146 -3.2410 -1.3239 11 6 1.9086 -3.3641 1.1640 12 6 1.0708 -4.6150 1.2311 13 8 0.1897 -4.7992 0.4183 14 7 1.3015 -5.5297 2.1938 15 6 0.4867 -6.7455 2.2593 16 6 0.9508 -7.6077 3.4350 17 1 2.0045 -7.5147 3.6982 18 6 0.3014 -8.9831 3.6003 19 1 -0.4101 -9.3347 2.8532 20 6 1.0332 -10.0345 4.4620 21 7 0.5673 -9.7767 5.8429 22 6 0.2578 -10.6950 6.8103 23 1 -0.3228 -10.3977 7.6712 24 6 0.6900 -12.0081 6.6846 25 7 1.5476 -12.3310 5.7398 26 14 0.0547 -13.3169 7.8564 27 1 -1.4224 -13.4126 7.7378 28 1 0.6652 -14.6264 7.5138 29 1 0.4168 -12.9518 9.2495 30 6 0.5106 -8.2995 5.9408 31 6 -0.0430 -7.8396 4.5749 32 1 -1.0111 -7.3392 4.5539 33 1 -0.3634 -0.1017 1.0226 34 1 -0.3634 -0.8348 -0.5993 35 1 -0.3635 0.9365 -0.4232 36 1 1.6582 2.1327 0.0004 37 1 4.1203 2.1327 0.0099 38 1 5.3516 0.0000 -0.0013 39 1 4.1206 -2.1322 -0.0109 40 1 2.7827 -3.4377 -1.4169 41 1 1.1699 -4.1851 -1.3280 42 1 1.3840 -2.6268 -2.1615 43 1 2.9552 -3.6349 1.0251 44 1 1.7984 -2.8029 2.0918 45 1 2.0064 -5.3827 2.8436 46 1 -0.5599 -6.4745 2.3989 47 1 0.5961 -7.3066 1.3313 48 1 0.7560 -11.0414 4.1498 49 1 2.1125 -9.8980 4.3930 50 1 1.8494 -13.2486 5.6517 51 1 1.5080 -7.8909 6.1037 52 1 -0.1609 -7.9972 6.7443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485618438.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:44 Heat of formation + Delta-G solvation = 29.279329 kcal Electronic energy + Delta-G solvation = -28563.262600 eV Core-core repulsion = 24721.567430 eV Total energy + Delta-G solvation = -3841.695170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.54 seconds Orbital eigenvalues (eV) -40.46238 -39.55336 -38.73913 -35.56244 -34.78783 -33.35214 -33.03893 -30.97095 -30.21608 -28.61940 -27.16612 -27.15589 -26.75157 -24.80861 -23.82952 -21.89945 -21.16531 -20.85638 -20.18031 -19.55547 -19.25809 -17.45924 -16.83543 -16.47546 -16.26830 -15.77096 -15.54294 -15.07072 -14.80745 -14.41835 -14.29553 -14.19653 -13.90958 -13.54821 -13.41412 -13.27266 -13.15314 -12.82442 -12.79128 -12.68764 -12.59616 -12.28972 -11.97404 -11.85132 -11.58803 -11.45009 -11.26512 -11.12855 -10.98637 -10.82821 -10.77124 -10.66700 -10.31968 -10.17283 -9.89316 -9.75771 -9.41506 -9.14155 -9.08121 -8.93987 -8.85210 -8.64327 -6.87295 -5.82091 -3.16605 1.05018 1.08894 2.57870 3.10122 3.37585 3.42305 3.43466 3.45638 4.11989 4.35959 4.41052 4.45438 4.61623 4.64388 4.76860 4.82871 4.86340 4.92762 5.01007 5.16991 5.20006 5.28915 5.30345 5.37764 5.38420 5.39335 5.43707 5.49502 5.50035 5.52278 5.69833 5.78139 5.83231 5.87037 5.88829 5.91330 5.93878 5.96302 6.13741 6.20826 6.21453 6.24048 6.37702 6.42265 6.55142 6.65068 6.69350 6.72296 6.90301 7.33434 7.46247 7.50601 7.69458 8.17447 8.19387 9.09269 9.72030 10.49718 11.32585 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.001587 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.924224 B =17639.905422 C =17766.928542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.075 4.075 8 C -0.040 4.040 9 H 0.092 0.908 10 C -0.148 4.148 11 C -0.134 4.134 12 C 0.511 3.489 13 O -0.541 6.541 14 N -0.725 5.725 15 C 0.154 3.846 16 C -0.150 4.150 17 H 0.102 0.898 18 C -0.162 4.162 19 H 0.103 0.897 20 C 0.185 3.815 21 N -0.594 5.594 22 C -0.230 4.230 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.915 5.915 26 Si 0.913 3.087 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.283 1.283 30 C 0.154 3.846 31 C -0.171 4.171 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.402 0.598 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.024 0.976 50 H 0.255 0.745 51 H 0.024 0.976 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 26.179 -13.237 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.075 4.075 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.205 4.205 11 C -0.174 4.174 12 C 0.298 3.702 13 O -0.419 6.419 14 N -0.376 5.376 15 C 0.031 3.969 16 C -0.169 4.169 17 H 0.120 0.880 18 C -0.183 4.183 19 H 0.121 0.879 20 C 0.060 3.940 21 N -0.317 5.317 22 C -0.358 4.358 23 H 0.093 0.907 24 C -0.202 4.202 25 N -0.561 5.561 26 Si 0.743 3.257 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.210 1.210 30 C 0.027 3.973 31 C -0.191 4.191 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.236 0.764 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.065 0.935 51 H 0.041 0.959 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.839 25.735 -13.713 29.298 hybrid contribution 0.191 -0.543 0.938 1.101 sum 3.030 25.192 -12.775 28.408 Atomic orbital electron populations 1.20879 0.91275 1.02876 1.02661 1.19807 0.96071 0.92575 0.99664 1.21032 0.94298 0.97371 1.01129 1.21117 0.94310 0.98045 1.00588 1.21121 0.99824 0.92542 1.00795 1.21010 0.93632 0.98136 1.00163 1.19751 0.93623 0.94225 0.99922 1.19960 1.00420 0.90682 0.94828 0.88964 1.21952 1.01473 1.01594 0.95530 1.21758 1.00539 0.94337 1.00773 1.20619 0.84374 0.84601 0.80630 1.90669 1.33178 1.78126 1.39914 1.46097 1.37878 1.21341 1.32329 1.20860 0.94464 0.83959 0.97600 1.22531 0.98453 0.99025 0.96876 0.87964 1.24211 1.03226 0.89938 1.00882 0.87917 1.20999 0.94209 0.96178 0.82651 1.45151 1.78050 0.99011 1.09496 1.18940 1.27045 0.89048 1.00731 0.90694 1.24918 0.98062 0.98138 0.99050 1.69896 1.33222 1.18154 1.34805 0.86194 0.78400 0.80910 0.80221 1.21041 1.21520 1.20967 1.21143 0.97028 0.86549 0.92539 1.23970 0.99021 1.03364 0.92752 0.87971 0.91016 0.90837 0.91659 0.86223 0.86290 0.86202 0.86067 0.93149 0.90123 0.92865 0.88786 0.88794 0.76411 0.91520 0.91193 0.89531 0.95813 0.93483 0.95869 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.16 36.00 0.33 -0.51 16 2 C -0.08 -0.67 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.91 9.68 -39.58 -0.38 -1.29 16 4 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 5 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 6 C -0.11 -0.87 8.79 -39.58 -0.35 -1.22 16 7 C -0.08 -0.63 4.78 -104.62 -0.50 -1.13 16 8 C -0.04 -0.35 1.95 -91.77 -0.18 -0.53 16 9 H 0.09 0.90 5.51 -51.93 -0.29 0.61 16 10 C -0.15 -1.39 8.80 37.16 0.33 -1.06 16 11 C -0.13 -1.10 4.84 -27.88 -0.14 -1.23 16 12 C 0.51 5.79 7.55 -10.98 -0.08 5.71 16 13 O -0.54 -7.97 13.96 5.56 0.08 -7.89 16 14 N -0.73 -7.85 5.56 -60.29 -0.33 -8.19 16 15 C 0.15 2.02 5.95 -4.04 -0.02 2.00 16 16 C -0.15 -2.23 5.40 -90.62 -0.49 -2.72 16 17 H 0.10 1.51 8.04 -51.93 -0.42 1.09 16 18 C -0.16 -3.01 6.85 -89.29 -0.61 -3.62 16 19 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 20 C 0.19 4.39 5.66 -2.49 -0.01 4.38 16 21 N -0.59 -15.10 3.37 -168.97 -0.57 -15.67 16 22 C -0.23 -6.37 10.34 -15.06 -0.16 -6.53 16 23 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 24 C 0.00 -0.12 5.39 -17.43 -0.09 -0.21 16 25 N -0.91 -26.64 10.96 55.49 0.61 -26.04 16 26 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C 0.15 3.17 7.04 -2.41 -0.02 3.15 16 31 C -0.17 -2.96 6.74 -89.29 -0.60 -3.56 16 32 H 0.10 1.65 8.12 -51.93 -0.42 1.22 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 6.51 -51.93 -0.34 0.20 16 35 H 0.06 0.37 8.05 -51.93 -0.42 -0.05 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.79 7.18 -52.48 -0.38 0.42 16 40 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 41 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.62 7.31 -51.93 -0.38 0.24 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.40 3.46 8.40 -40.82 -0.34 3.12 16 46 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.09 2.30 6.63 -51.93 -0.34 1.96 16 49 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 52 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 412.42 15.07 6.22 6.22 Total: -1.00 -31.89 412.42 -12.06 -43.95 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -8.64 Total: 3.11 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -4.39 Total: -12.28 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.30 Total: -49.90 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.08 Total: -7.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.89 -12.06 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485618438.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.229 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds