Wall clock time and date at job start Wed Apr 1 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 119.99738 * 2 1 4 4 C 1.38209 * 120.00111 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.38223 * 119.99597 * 359.70413 * 5 4 3 7 7 C 1.38213 * 120.00368 * 179.97438 * 2 1 3 8 8 C 1.50693 * 119.99855 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.56817 * 334.31701 * 8 7 2 10 10 C 1.53073 * 117.49324 * 188.60260 * 8 7 2 11 11 C 1.52996 * 59.98707 * 252.51673 * 10 8 7 12 12 H 1.09005 * 117.50184 * 107.49582 * 11 10 8 13 13 C 1.50704 * 117.50041 * 252.50186 * 11 10 8 14 14 O 1.21279 * 120.00192 * 68.74187 * 13 11 10 15 15 N 1.34773 * 119.99674 * 248.74202 * 13 11 10 16 16 C 1.46925 * 120.63543 * 359.97438 * 15 13 11 17 17 C 1.53184 * 108.77814 * 233.63175 * 16 15 13 18 18 C 1.53043 * 109.31371 * 305.35995 * 17 16 15 19 19 C 1.53043 * 109.53442 * 61.36785 * 18 17 16 20 20 H 1.08992 * 109.52365 * 58.60408 * 19 18 17 21 21 C 1.53000 * 109.49628 * 178.68700 * 19 18 17 22 22 N 1.46499 * 109.46840 * 294.83366 * 21 19 18 23 23 C 1.36936 * 120.00002 * 180.02562 * 22 21 19 24 24 H 1.08004 * 120.00140 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00367 * 180.02562 * 23 22 21 26 26 N 1.31619 * 119.99972 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00444 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46864 * 359.97438 * 27 25 23 29 29 H 1.48494 * 109.47259 * 119.99588 * 27 25 23 30 30 H 1.48495 * 109.47205 * 239.99955 * 27 25 23 31 31 C 1.46932 * 120.62905 * 179.97438 * 15 13 11 32 32 H 1.08996 * 109.47135 * 270.01984 * 1 2 3 33 33 H 1.09001 * 109.47501 * 30.02868 * 1 2 3 34 34 H 1.09009 * 109.46519 * 150.02301 * 1 2 3 35 35 H 1.08003 * 119.99529 * 359.97438 * 3 2 1 36 36 H 1.07994 * 120.00289 * 179.97438 * 4 3 2 37 37 H 1.07993 * 120.00297 * 179.97438 * 5 4 3 38 38 H 1.07993 * 119.99626 * 180.29783 * 6 5 4 39 39 H 1.09002 * 117.51248 * 145.04346 * 10 8 7 40 40 H 1.08998 * 117.51464 * 359.97438 * 10 8 7 41 41 H 1.08998 * 109.58627 * 353.41976 * 16 15 13 42 42 H 1.09006 * 109.58550 * 113.83826 * 16 15 13 43 43 H 1.09001 * 109.50334 * 65.31372 * 17 16 15 44 44 H 1.09003 * 109.49982 * 185.38551 * 17 16 15 45 45 H 1.08998 * 109.46287 * 301.35034 * 18 17 16 46 46 H 1.08999 * 109.46207 * 181.38654 * 18 17 16 47 47 H 1.09002 * 109.47398 * 54.83692 * 21 19 18 48 48 H 1.09001 * 109.47194 * 174.83873 * 21 19 18 49 49 H 0.97000 * 120.00420 * 0.02562 * 22 21 19 50 50 H 0.96996 * 120.00586 * 180.02562 * 26 25 23 51 51 H 1.08991 * 109.58462 * 6.58497 * 31 15 13 52 52 H 1.08996 * 109.70368 * 246.22645 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5807 -1.1968 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4447 -2.5020 0.0017 9 1 0.4422 -2.4661 0.4282 10 6 2.2542 -3.7851 0.2054 11 6 1.6788 -3.4539 -1.1731 12 1 2.3775 -3.1359 -1.9470 13 6 0.5058 -4.2699 -1.6519 14 8 -0.5733 -4.1565 -1.1101 15 7 0.6560 -5.1257 -2.6822 16 6 1.9568 -5.2737 -3.3490 17 6 1.7672 -5.0567 -4.8535 18 6 0.6847 -6.0075 -5.3696 19 6 -0.6405 -5.7038 -4.6670 20 1 -0.9218 -4.6672 -4.8523 21 6 -1.7295 -6.6329 -5.2071 22 7 -1.9679 -6.3353 -6.6216 23 6 -2.9067 -7.0448 -7.3218 24 1 -3.4717 -7.8236 -6.8312 25 6 -3.1322 -6.7632 -8.6622 26 7 -2.4440 -5.8138 -9.2601 27 14 -4.4134 -7.7306 -9.6173 28 1 -5.0442 -8.7340 -8.7226 29 1 -5.4524 -6.8027 -10.1315 30 1 -3.7616 -8.4246 -10.7569 31 6 -0.4781 -5.9285 -3.1599 32 1 -0.3633 0.0004 1.0276 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3633 -0.8903 -0.5135 35 1 1.6581 2.1327 -0.0004 36 1 4.1203 2.1328 0.0001 37 1 5.3517 0.0003 0.0005 38 1 4.1207 -2.1320 0.0110 39 1 1.7843 -4.5933 0.7659 40 1 3.3315 -3.6851 0.3380 41 1 2.6542 -4.5328 -2.9580 42 1 2.3470 -6.2757 -3.1705 43 1 1.4638 -4.0260 -5.0371 44 1 2.7052 -5.2576 -5.3711 45 1 0.9774 -7.0371 -5.1634 46 1 0.5651 -5.8725 -6.4445 47 1 -1.4076 -7.6691 -5.1030 48 1 -2.6499 -6.4800 -4.6436 49 1 -1.4607 -5.6356 -7.0622 50 1 -2.6018 -5.6167 -10.1966 51 1 -1.3873 -5.6196 -2.6443 52 1 -0.2886 -6.9842 -2.9660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491180163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:38 Heat of formation + Delta-G solvation = -2.271853 kcal Electronic energy + Delta-G solvation = -29413.273270 eV Core-core repulsion = 25570.209938 eV Total energy + Delta-G solvation = -3843.063332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.64534 -40.50761 -39.05082 -37.23898 -36.62590 -34.40879 -33.71577 -32.96114 -31.87395 -31.35841 -27.90829 -27.52035 -26.80368 -25.26153 -24.83855 -23.89349 -23.06662 -22.31307 -21.34895 -20.96986 -19.78738 -19.22316 -18.56971 -17.33204 -17.23748 -16.70412 -16.32598 -16.19427 -15.75087 -15.71406 -15.52152 -15.32262 -15.15076 -14.95725 -14.72230 -14.66516 -14.11301 -13.94990 -13.81818 -13.69014 -13.43828 -13.26240 -13.17798 -13.05573 -12.82404 -12.81421 -12.76215 -12.18068 -12.12665 -12.03724 -11.94934 -11.83163 -11.74329 -11.61478 -11.56040 -11.41637 -11.36074 -10.95809 -10.80464 -9.68030 -9.64140 -9.36937 -9.02206 -7.97482 -5.26453 0.38478 0.50877 1.44456 1.45796 1.46739 1.56948 1.91947 2.54289 2.66537 3.07005 3.35733 3.38315 3.63663 3.70300 3.76861 3.84832 3.90820 3.94987 4.01436 4.03975 4.09510 4.21260 4.25490 4.29844 4.39878 4.44323 4.45703 4.55919 4.66300 4.66588 4.73849 4.74961 4.76690 4.78665 4.83431 4.86896 4.93728 4.96529 4.98757 5.13899 5.17370 5.20118 5.22568 5.30250 5.38537 5.44719 5.49071 5.50827 5.62595 5.65821 5.77733 6.15037 6.24792 6.39581 7.11684 7.31088 8.05993 8.30327 9.26359 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017576 B = 0.002023 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.703127 B =13834.681003 C =14139.128698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.094 4.094 9 H 0.104 0.896 10 C -0.119 4.119 11 C -0.178 4.178 12 H 0.146 0.854 13 C 0.536 3.464 14 O -0.588 6.588 15 N -0.603 5.603 16 C 0.107 3.893 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.093 4.093 20 H 0.048 0.952 21 C 0.158 3.842 22 N -0.742 5.742 23 C -0.246 4.246 24 H 0.075 0.925 25 C -0.077 4.077 26 N -0.969 5.969 27 Si 0.975 3.025 28 H -0.267 1.267 29 H -0.294 1.294 30 H -0.290 1.290 31 C 0.127 3.873 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.030 0.970 48 H 0.012 0.988 49 H 0.374 0.626 50 H 0.252 0.748 51 H 0.069 0.931 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.121 9.759 22.766 31.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.146 4.146 6 C -0.136 4.136 7 C -0.067 4.067 8 C -0.112 4.112 9 H 0.122 0.878 10 C -0.156 4.156 11 C -0.199 4.199 12 H 0.163 0.837 13 C 0.326 3.674 14 O -0.469 6.469 15 N -0.334 5.334 16 C -0.014 4.014 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.113 4.113 20 H 0.066 0.934 21 C 0.031 3.969 22 N -0.385 5.385 23 C -0.377 4.377 24 H 0.093 0.907 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.804 3.196 28 H -0.191 1.191 29 H -0.221 1.221 30 H -0.217 1.217 31 C 0.004 3.996 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.030 0.970 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.425 9.657 23.039 31.645 hybrid contribution -1.293 -0.058 -1.296 1.831 sum 18.132 9.599 21.744 29.895 Atomic orbital electron populations 1.20830 0.91438 1.02645 1.02589 1.19949 0.96327 0.93221 1.00020 1.21259 0.95057 0.97492 1.01074 1.21464 0.94064 0.99338 0.99516 1.21447 1.01121 0.92080 0.99921 1.21303 0.92801 0.99638 0.99881 1.19048 0.93811 0.92166 1.01655 1.20998 1.00472 0.89086 1.00665 0.87804 1.23273 1.01705 0.97255 0.93400 1.22342 0.99474 1.03345 0.94711 0.83688 1.20226 0.89049 0.78922 0.79169 1.90666 1.29600 1.68129 1.58523 1.48119 1.12159 1.40683 1.32415 1.22074 0.83282 1.04434 0.91633 1.21922 0.99754 0.99159 0.95941 1.21456 0.93527 1.00228 0.99234 1.21479 0.96170 0.98765 0.94841 0.93389 1.20726 0.95106 0.96564 0.84464 1.42538 1.45774 1.43125 1.07060 1.19682 1.12621 1.12661 0.92777 0.90706 1.25590 1.02615 1.00618 0.98044 1.69822 1.45634 1.35280 1.11293 0.85045 0.78304 0.77809 0.78436 1.19089 1.22111 1.21719 1.21412 0.89826 0.95748 0.92634 0.90606 0.90906 0.92749 0.85005 0.84159 0.83677 0.83625 0.88083 0.84258 0.86915 0.88995 0.92831 0.88156 0.90928 0.93611 0.95200 0.97007 0.79345 0.93955 0.91221 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.33 71.23 0.66 -1.58 16 2 C -0.10 -1.80 5.88 -19.87 -0.12 -1.91 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 5 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 6 C -0.12 -1.57 9.30 22.27 0.21 -1.36 16 7 C -0.07 -1.18 5.61 -19.87 -0.11 -1.29 16 8 C -0.09 -1.76 4.66 -11.52 -0.05 -1.81 16 9 H 0.10 2.46 6.43 -2.39 -0.02 2.45 16 10 C -0.12 -1.58 9.57 30.62 0.29 -1.29 16 11 C -0.18 -3.20 4.76 -11.54 -0.05 -3.26 16 12 H 0.15 2.03 6.57 -2.38 -0.02 2.02 16 13 C 0.54 14.21 7.48 87.66 0.66 14.87 16 14 O -0.59 -20.73 15.67 -3.03 -0.05 -20.77 16 15 N -0.60 -14.64 2.97 -818.84 -2.43 -17.07 16 16 C 0.11 1.78 6.35 86.36 0.55 2.33 16 17 C -0.13 -2.72 6.08 30.67 0.19 -2.53 16 18 C -0.11 -3.13 5.06 30.62 0.15 -2.97 16 19 C -0.09 -3.13 2.38 -10.70 -0.03 -3.15 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 C 0.16 6.59 5.65 86.38 0.49 7.08 16 22 N -0.74 -38.92 5.32 -343.45 -1.83 -40.75 16 23 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 24 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 26 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 27 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 30 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 31 C 0.13 3.67 5.72 86.37 0.49 4.16 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.05 1.25 6.65 -2.38 -0.02 1.23 16 35 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.15 1.15 6.02 -2.91 -0.02 1.13 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.14 0.96 6.17 -2.39 -0.01 0.94 16 41 H 0.11 1.25 5.51 -2.39 -0.01 1.24 16 42 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.65 7.16 -2.39 -0.02 1.64 16 47 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.37 20.79 6.86 -92.71 -0.64 20.16 16 50 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 51 H 0.07 2.33 7.00 -2.39 -0.02 2.32 16 52 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -74.84 409.19 3.58 -71.26 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.28 Total: 32.97 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.30 Total: -14.63 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.98 Total: -117.84 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.77 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -74.84 3.58 -71.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491180163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.986 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds