Wall clock time and date at job start Wed Apr 1 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 115.54689 * 2 1 4 4 C 1.53003 * 117.50097 * 145.66688 * 2 1 3 5 5 H 1.08995 * 117.49621 * 359.97438 * 4 2 1 6 6 C 1.50698 * 117.49831 * 214.98459 * 4 2 1 7 7 O 1.21285 * 119.99684 * 269.02198 * 6 4 2 8 8 N 1.34773 * 120.00446 * 89.02463 * 6 4 2 9 9 C 1.47031 * 125.64489 * 0.02562 * 8 6 4 10 10 C 1.54321 * 107.39972 * 180.94997 * 9 8 6 11 11 C 1.55547 * 102.76154 * 22.23675 * 10 9 8 12 12 H 1.09003 * 111.05931 * 82.57683 * 11 10 9 13 13 C 1.53004 * 110.96456 * 206.40055 * 11 10 9 14 14 N 1.46499 * 109.47351 * 287.19545 * 13 11 10 15 15 C 1.36936 * 120.00387 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99756 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00118 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99755 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47358 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47082 * 119.99883 * 19 17 15 22 22 H 1.48499 * 109.47221 * 239.99636 * 19 17 15 23 23 C 1.47422 * 125.65471 * 179.97438 * 8 6 4 24 24 C 1.52994 * 117.50194 * 214.29007 * 2 1 3 25 25 H 1.09001 * 117.50041 * 145.01882 * 24 2 1 26 26 C 1.50700 * 117.50080 * 0.02562 * 24 2 1 27 27 C 1.38234 * 119.99649 * 299.71068 * 26 24 2 28 28 C 1.38241 * 119.99758 * 179.78185 * 27 26 24 29 29 C 1.38237 * 119.99915 * 0.44989 * 28 27 26 30 30 C 1.38232 * 119.99823 * 359.80605 * 29 28 27 31 31 C 1.38230 * 120.00342 * 119.98338 * 26 24 2 32 32 H 1.08994 * 109.47439 * 325.72443 * 1 2 3 33 33 H 1.09007 * 109.46940 * 85.72661 * 1 2 3 34 34 H 1.09001 * 109.47206 * 205.71885 * 1 2 3 35 35 H 1.09005 * 109.47030 * 200.35686 * 3 2 1 36 36 H 1.09000 * 109.47355 * 320.36159 * 3 2 1 37 37 H 1.09001 * 109.47537 * 80.35854 * 3 2 1 38 38 H 1.09002 * 109.88414 * 300.44374 * 9 8 6 39 39 H 1.08995 * 109.87959 * 61.45141 * 9 8 6 40 40 H 1.08996 * 110.71942 * 140.63563 * 10 9 8 41 41 H 1.09005 * 110.71591 * 263.90453 * 10 9 8 42 42 H 1.08996 * 109.46884 * 47.19588 * 13 11 10 43 43 H 1.09001 * 109.46541 * 167.20078 * 13 11 10 44 44 H 0.97007 * 120.00196 * 0.02562 * 14 13 11 45 45 H 0.97001 * 119.99690 * 179.97438 * 18 17 15 46 46 H 1.08995 * 110.36786 * 274.74680 * 23 8 6 47 47 H 1.09009 * 110.36310 * 36.95506 * 23 8 6 48 48 H 1.07995 * 120.00062 * 359.97438 * 27 26 24 49 49 H 1.08001 * 120.00166 * 180.27198 * 28 27 26 50 50 H 1.07994 * 119.99627 * 179.83055 * 29 28 27 51 51 H 1.08002 * 119.99842 * 180.02562 * 30 29 28 52 52 H 1.08001 * 119.99904 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2365 -1.1207 0.7654 5 1 1.6113 -1.8577 1.2693 6 6 3.5292 -0.7805 1.4612 7 8 4.5848 -0.9162 0.8796 8 7 3.5124 -0.3255 2.7297 9 6 2.3096 -0.1152 3.5487 10 6 2.7717 0.4344 4.9147 11 6 4.1669 1.0391 4.5875 12 1 4.0713 2.0413 4.1696 13 6 5.0638 1.0484 5.8271 14 7 4.6028 2.0833 6.7558 15 6 5.2568 2.2788 7.9429 16 1 6.1124 1.6697 8.1946 17 6 4.8196 3.2591 8.8230 18 7 3.7766 4.0011 8.5164 19 14 5.7115 3.5252 10.4426 20 1 6.8426 2.5688 10.5478 21 1 6.2311 4.9152 10.4990 22 1 4.7695 3.3029 11.5688 23 6 4.6970 0.0429 3.5262 24 6 2.2365 -1.1212 -0.7645 25 1 3.1716 -0.8755 -1.2679 26 6 1.3722 -2.1408 -1.4605 27 6 0.4893 -2.9131 -0.7291 28 6 -0.3068 -3.8453 -1.3681 29 6 -0.2133 -4.0116 -2.7373 30 6 0.6733 -3.2429 -3.4679 31 6 1.4662 -2.3077 -2.8295 32 1 -0.3634 0.8491 0.5787 33 1 -0.3633 0.0766 -1.0249 34 1 -0.3634 -0.9259 0.4460 35 1 3.2158 1.2927 -0.3575 36 1 1.6325 2.0495 -0.6556 37 1 2.1912 1.7825 1.0131 38 1 1.6514 0.6050 3.0627 39 1 1.7858 -1.0610 3.6875 40 1 2.0888 1.2055 5.2710 41 1 2.8605 -0.3707 5.6442 42 1 5.0182 0.0752 6.3158 43 1 6.0915 1.2583 5.5303 44 1 3.8340 2.6302 6.5299 45 1 3.4709 4.6858 9.1317 46 1 5.1179 -0.8385 4.0099 47 1 5.4451 0.5217 2.8943 48 1 0.4193 -2.7861 0.3410 49 1 -0.9997 -4.4457 -0.7973 50 1 -0.8333 -4.7417 -3.2361 51 1 0.7460 -3.3725 -4.5376 52 1 2.1588 -1.7070 -3.4004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491805698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:27 Heat of formation + Delta-G solvation = 20.067173 kcal Electronic energy + Delta-G solvation = -29528.542481 eV Core-core repulsion = 25686.447842 eV Total energy + Delta-G solvation = -3842.094640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.95049 -39.55521 -38.12175 -36.98179 -34.68458 -32.24970 -31.63132 -31.23176 -30.28343 -29.43525 -28.92672 -27.72617 -25.96158 -24.39787 -23.13891 -22.68504 -22.37235 -21.39934 -20.07054 -19.63373 -18.67361 -17.64404 -17.07130 -16.52170 -16.24538 -15.78984 -15.44393 -15.15481 -14.73799 -14.46339 -14.24251 -14.12744 -13.69533 -13.61572 -13.46506 -13.39331 -13.15555 -12.95666 -12.84401 -12.67507 -12.55317 -12.50469 -12.45204 -12.28816 -11.77789 -11.63314 -11.33017 -11.19691 -11.18128 -10.89271 -10.72520 -10.62747 -10.48601 -10.40224 -10.25137 -10.02345 -9.77656 -9.70405 -9.21560 -8.90297 -8.80785 -8.61607 -6.94759 -5.79271 -3.07792 0.99747 1.09743 2.47514 2.87107 3.26534 3.42000 3.48095 3.50031 3.70727 4.12015 4.33940 4.40602 4.51739 4.56990 4.62522 4.68174 4.74999 4.76627 4.81494 4.86447 4.98053 5.10450 5.17637 5.27356 5.29273 5.30818 5.36510 5.46849 5.54943 5.57195 5.62914 5.63756 5.67257 5.70450 5.71354 5.77543 5.88436 5.90820 6.01417 6.02776 6.03269 6.11247 6.17793 6.21051 6.21653 6.34002 6.37158 6.42642 6.68575 6.70703 6.82466 7.52242 7.68911 8.14568 8.39679 9.51264 10.08153 10.43034 11.43677 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.027851 B = 0.001893 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.121349 B =14788.755632 C =14923.666127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.171 4.171 5 H 0.128 0.872 6 C 0.560 3.440 7 O -0.543 6.543 8 N -0.610 5.610 9 C 0.101 3.899 10 C -0.121 4.121 11 C -0.104 4.104 12 H 0.085 0.915 13 C 0.164 3.836 14 N -0.731 5.731 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.113 3.887 24 C -0.081 4.081 25 H 0.123 0.877 26 C -0.043 4.043 27 C -0.118 4.118 28 C -0.117 4.117 29 C -0.126 4.126 30 C -0.118 4.118 31 C -0.111 4.111 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -13.420 -23.385 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.180 4.180 4 C -0.192 4.192 5 H 0.145 0.855 6 C 0.349 3.651 7 O -0.421 6.421 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.159 4.159 11 C -0.124 4.124 12 H 0.103 0.897 13 C 0.036 3.964 14 N -0.375 5.375 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.010 4.010 24 C -0.099 4.099 25 H 0.141 0.859 26 C -0.044 4.044 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.144 4.144 30 C -0.136 4.136 31 C -0.129 4.129 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.585 -13.544 -23.629 29.220 hybrid contribution 0.163 0.241 1.007 1.048 sum -10.422 -13.304 -22.622 28.238 Atomic orbital electron populations 1.21431 0.91151 1.02450 1.02419 1.21708 0.95153 0.90908 1.00727 1.21436 1.00387 0.93445 1.02716 1.22581 0.97963 1.04031 0.94582 0.85490 1.19148 0.89535 0.76499 0.79948 1.90699 1.32547 1.53832 1.65006 1.48438 1.09068 1.64467 1.12365 1.22118 0.87496 1.00453 0.92116 1.22730 0.97303 1.01188 0.94666 1.22628 0.95368 0.98504 0.95876 0.89685 1.20552 0.94803 0.92963 0.88069 1.42311 1.36530 1.39997 1.18657 1.19276 1.09157 1.14199 0.94341 0.91103 1.24734 0.98420 0.98867 0.98990 1.69664 1.26814 1.24649 1.37093 0.86117 0.78756 0.77548 0.83772 1.20551 1.21870 1.21884 1.22265 0.87998 0.98261 0.92460 1.21332 1.00038 0.97450 0.91120 0.85873 1.19067 0.96042 0.95783 0.93460 1.21080 0.96388 0.96263 0.99874 1.21128 0.99318 0.98288 0.94793 1.21146 0.99131 0.99834 0.94330 1.21129 0.96372 0.96203 0.99880 1.20965 0.99624 0.98550 0.93759 0.91585 0.91686 0.91940 0.91938 0.91419 0.91482 0.91368 0.91784 0.89473 0.90295 0.95963 0.96029 0.78255 0.93575 0.91245 0.90466 0.86043 0.86068 0.86220 0.86060 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 8.61 37.16 0.32 -0.55 16 2 C -0.08 -0.76 2.70 -154.51 -0.42 -1.18 16 3 C -0.12 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.17 -1.78 4.36 -91.77 -0.40 -2.18 16 5 H 0.13 1.15 6.08 -51.93 -0.32 0.83 16 6 C 0.56 7.70 6.49 -10.99 -0.07 7.63 16 7 O -0.54 -9.40 16.75 5.55 0.09 -9.31 16 8 N -0.61 -7.97 3.33 -170.52 -0.57 -8.54 16 9 C 0.10 1.12 6.48 -3.06 -0.02 1.10 16 10 C -0.12 -1.62 6.40 -24.68 -0.16 -1.78 16 11 C -0.10 -1.59 3.06 -88.26 -0.27 -1.86 16 12 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 13 C 0.16 3.16 5.72 -4.04 -0.02 3.14 16 14 N -0.73 -17.89 5.55 -59.91 -0.33 -18.22 16 15 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 C 0.11 1.60 6.38 -2.53 -0.02 1.59 16 24 C -0.08 -0.81 5.20 -91.78 -0.48 -1.29 16 25 H 0.12 1.39 7.79 -51.93 -0.40 0.99 16 26 C -0.04 -0.40 5.04 -104.63 -0.53 -0.93 16 27 C -0.12 -0.99 7.78 -39.58 -0.31 -1.29 16 28 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 29 C -0.13 -0.91 10.05 -39.58 -0.40 -1.31 16 30 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 31 C -0.11 -0.94 9.74 -39.59 -0.39 -1.33 16 32 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.43 5.94 -51.93 -0.31 0.12 16 35 H 0.06 0.68 7.81 -51.93 -0.41 0.28 16 36 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.08 1.09 7.92 -51.93 -0.41 0.68 16 42 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 9.79 7.67 -40.82 -0.31 9.48 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 47 H 0.08 1.15 8.04 -51.92 -0.42 0.74 16 48 H 0.12 0.90 5.19 -52.49 -0.27 0.62 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 52 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 416.01 15.07 6.27 6.27 Total: -1.00 -32.27 416.01 -11.42 -43.69 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.72 Total: 6.79 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.86 Total: -10.86 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.18 Total: -53.77 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.27 -11.42 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491805698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.759 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds