Wall clock time and date at job start Wed Apr 1 2020 03:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.46893 * 2 1 4 4 C 1.38251 * 120.00132 * 265.00220 * 3 2 1 5 5 C 1.38213 * 119.99966 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.00035 * 359.95895 * 5 4 3 7 7 C 1.38207 * 119.99806 * 359.97438 * 6 5 4 8 8 C 1.38219 * 119.99735 * 84.73144 * 3 2 1 9 9 C 1.50695 * 119.99961 * 359.97438 * 8 3 2 10 10 H 1.09005 * 115.55408 * 334.42528 * 9 8 3 11 11 C 1.52997 * 117.49851 * 188.74782 * 9 8 3 12 12 C 1.52997 * 117.49703 * 120.08980 * 9 8 3 13 13 H 1.09001 * 117.50184 * 0.02562 * 12 9 8 14 14 C 1.50702 * 117.50095 * 214.97889 * 12 9 8 15 15 O 1.21282 * 120.00109 * 0.02562 * 14 12 9 16 16 N 1.34777 * 119.99983 * 179.97438 * 14 12 9 17 17 C 1.47420 * 125.65205 * 354.63237 * 16 14 12 18 18 C 1.54691 * 104.94461 * 204.07094 * 17 16 14 19 19 C 1.55155 * 101.67421 * 323.27884 * 18 17 16 20 20 C 1.47028 * 125.64782 * 174.93664 * 16 14 12 21 21 H 1.09004 * 109.87781 * 59.48693 * 20 16 14 22 22 C 1.53000 * 109.88306 * 298.48031 * 20 16 14 23 23 N 1.46496 * 109.47122 * 175.38900 * 22 20 16 24 24 C 1.36936 * 119.99981 * 184.93565 * 23 22 20 25 25 H 1.08004 * 120.00079 * 359.97438 * 24 23 22 26 26 C 1.38810 * 120.00138 * 179.97438 * 24 23 22 27 27 N 1.31623 * 120.00015 * 0.02562 * 26 24 23 28 28 Si 1.86798 * 120.00209 * 179.97438 * 26 24 23 29 29 H 1.48498 * 109.47245 * 359.97438 * 28 26 24 30 30 H 1.48502 * 109.47485 * 120.00105 * 28 26 24 31 31 H 1.48504 * 109.47307 * 240.00128 * 28 26 24 32 32 H 1.08997 * 109.47601 * 60.00270 * 1 2 3 33 33 H 1.09001 * 109.46976 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47393 * 299.99551 * 1 2 3 35 35 H 1.08999 * 109.47393 * 240.00449 * 2 1 3 36 36 H 1.08997 * 109.47601 * 119.99730 * 2 1 3 37 37 H 1.08005 * 120.00262 * 359.97438 * 4 3 2 38 38 H 1.08000 * 119.99789 * 179.97438 * 5 4 3 39 39 H 1.07999 * 120.00029 * 180.02562 * 6 5 4 40 40 H 1.08002 * 119.99843 * 180.02562 * 7 6 5 41 41 H 1.09001 * 117.49917 * 0.02562 * 11 9 8 42 42 H 1.09008 * 117.49852 * 145.02397 * 11 9 8 43 43 H 1.09007 * 110.36571 * 323.00267 * 17 16 14 44 44 H 1.09000 * 110.36746 * 85.32143 * 17 16 14 45 45 H 1.08994 * 111.10086 * 205.10451 * 18 17 16 46 46 H 1.09001 * 110.84445 * 81.33686 * 18 17 16 47 47 H 1.09001 * 110.71856 * 276.96777 * 19 18 17 48 48 H 1.08998 * 110.86664 * 153.77105 * 19 18 17 49 49 H 1.08998 * 109.46977 * 295.39163 * 22 20 16 50 50 H 1.09004 * 109.47210 * 55.38787 * 22 20 16 51 51 H 0.97000 * 120.00336 * 4.93026 * 23 22 20 52 52 H 0.97000 * 120.00456 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1927 5 6 2.8222 3.3408 -1.1926 6 6 2.9539 4.0274 0.0002 7 6 2.6239 3.4111 1.1924 8 6 2.1589 2.1090 1.1920 9 6 1.7943 1.4387 2.4914 10 1 1.0642 0.6328 2.4161 11 6 1.7589 2.3087 3.7495 12 6 2.8927 1.3003 3.5475 13 1 3.8789 1.6944 3.3025 14 6 2.8820 0.0605 4.4042 15 8 2.0240 -0.7812 4.2422 16 7 3.8265 -0.1133 5.3498 17 6 4.9862 0.7678 5.5781 18 6 6.0365 -0.1280 6.2762 19 6 5.1408 -1.0165 7.1793 20 6 3.8744 -1.2166 6.3205 21 1 3.9294 -2.1702 5.7953 22 6 2.6289 -1.1829 7.2084 23 7 2.6313 -2.3473 8.0973 24 6 1.5602 -2.5855 8.9166 25 1 0.7138 -1.9146 8.9077 26 6 1.5621 -3.6891 9.7585 27 7 2.5938 -4.5064 9.7697 28 14 0.1013 -4.0136 10.8765 29 1 -0.9200 -2.9544 10.6766 30 1 -0.4874 -5.3374 10.5504 31 1 0.5502 -4.0068 12.2921 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5137 0.8900 35 1 1.8933 -0.5137 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.2583 1.5015 -2.1245 38 1 3.0793 3.8226 -2.1244 39 1 3.3139 5.0457 0.0002 40 1 2.7265 3.9475 2.1241 41 1 1.9991 3.3660 3.6372 42 1 1.0057 2.0749 4.5021 43 1 5.3737 1.1384 4.6290 44 1 4.7092 1.5992 6.2263 45 1 6.7253 0.4682 6.8746 46 1 6.5773 -0.7317 5.5473 47 1 4.8990 -0.5013 8.1089 48 1 5.6229 -1.9724 7.3840 49 1 2.6324 -0.2705 7.8047 50 1 1.7362 -1.2048 6.5832 51 1 3.3915 -2.9497 8.1056 52 1 2.5951 -5.2779 10.3577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499920748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:01 Heat of formation + Delta-G solvation = 19.862340 kcal Electronic energy + Delta-G solvation = -29762.701158 eV Core-core repulsion = 25920.597636 eV Total energy + Delta-G solvation = -3842.103522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.61087 -39.70305 -37.80742 -36.12611 -34.47604 -34.38723 -31.70538 -31.28456 -30.73019 -29.53871 -28.74567 -25.33439 -24.81630 -24.13932 -23.95378 -22.57259 -21.98099 -21.27030 -20.64234 -20.04166 -18.70014 -17.66507 -16.94979 -16.56397 -16.37415 -15.81434 -15.25166 -15.11733 -14.57467 -14.42616 -14.06517 -14.03262 -13.73528 -13.68337 -13.43585 -13.39412 -13.26300 -12.79933 -12.67287 -12.63447 -12.44472 -12.11427 -12.00473 -11.92794 -11.59362 -11.53758 -11.21543 -11.07293 -10.95661 -10.89546 -10.82144 -10.72339 -10.59771 -10.48868 -10.37015 -9.98440 -9.75574 -9.57901 -9.01660 -8.82210 -8.69544 -8.40164 -6.86895 -5.71974 -3.00032 1.05257 1.14741 2.61789 3.01453 3.42919 3.47001 3.52770 3.55168 3.89895 4.26040 4.49999 4.58221 4.59931 4.62657 4.67132 4.68361 4.76988 4.79036 4.93110 4.98361 5.00242 5.10336 5.22217 5.28972 5.30671 5.39202 5.41280 5.47111 5.49721 5.60473 5.63387 5.68943 5.74980 5.79151 5.82056 5.82852 5.89213 5.95930 5.97398 6.07874 6.10414 6.11971 6.20215 6.26614 6.30981 6.43861 6.48496 6.57243 6.76467 6.85733 6.99584 7.71188 7.76562 8.36173 8.47299 9.58066 10.14644 10.50359 11.51201 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002417 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.628210 B =11580.914659 C =12650.348032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.048 4.048 9 C -0.088 4.088 10 H 0.131 0.869 11 C -0.144 4.144 12 C -0.170 4.170 13 H 0.121 0.879 14 C 0.554 3.446 15 O -0.528 6.528 16 N -0.608 5.608 17 C 0.102 3.898 18 C -0.135 4.135 19 C -0.121 4.121 20 C 0.130 3.870 21 H 0.076 0.924 22 C 0.148 3.852 23 N -0.728 5.728 24 C -0.232 4.232 25 H 0.070 0.930 26 C -0.016 4.016 27 N -0.935 5.935 28 Si 0.907 3.093 29 H -0.281 1.281 30 H -0.291 1.291 31 H -0.292 1.292 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.015 0.985 50 H 0.035 0.965 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 18.775 -21.173 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.048 4.048 9 C -0.106 4.106 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.191 4.191 13 H 0.139 0.861 14 C 0.342 3.658 15 O -0.404 6.404 16 N -0.342 5.342 17 C -0.021 4.021 18 C -0.173 4.173 19 C -0.159 4.159 20 C 0.027 3.973 21 H 0.094 0.906 22 C 0.020 3.980 23 N -0.373 5.373 24 C -0.364 4.364 25 H 0.088 0.912 26 C -0.211 4.211 27 N -0.584 5.584 28 Si 0.739 3.261 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.219 1.219 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.032 0.968 50 H 0.053 0.947 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.166 18.344 -21.236 28.533 hybrid contribution -0.347 -0.338 0.663 0.821 sum 4.819 18.006 -20.573 27.761 Atomic orbital electron populations 1.21741 0.94502 1.02070 1.02039 1.20612 0.96464 0.92445 1.03345 1.19763 0.98364 0.96286 0.92353 1.21028 0.99949 0.95181 0.97387 1.21120 1.00056 0.94828 0.98041 1.21078 1.00768 0.99860 0.92505 1.21053 0.99587 0.94533 0.98356 1.18996 0.99291 0.93722 0.92834 1.21156 1.00590 1.01888 0.87014 0.85159 1.23145 0.99216 0.96201 0.99544 1.22324 0.96692 0.97985 1.02139 0.86069 1.19173 0.80574 0.86647 0.79366 1.90748 1.36980 1.44123 1.68542 1.48421 1.25374 1.27505 1.32912 1.22263 0.86093 0.93613 1.00167 1.22763 0.97064 0.98331 0.99126 1.22668 0.94076 1.01023 0.98169 1.21829 0.96678 0.89683 0.89075 0.90572 1.20919 0.94685 0.91207 0.91218 1.42211 1.21609 1.27523 1.45910 1.19258 0.96368 1.06914 1.13833 0.91237 1.24725 0.98028 0.97801 1.00583 1.69668 1.30050 1.16471 1.42198 0.86103 0.81969 0.77702 0.80371 1.20591 1.21863 1.21909 0.92827 0.92129 0.92257 0.91180 0.90107 0.86118 0.86247 0.86177 0.85873 0.87524 0.87529 0.91027 0.91321 0.89952 0.90865 0.89922 0.89754 0.96770 0.94718 0.78320 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.73 37.16 0.36 -1.00 16 2 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 3 C -0.07 -0.68 5.13 -104.62 -0.54 -1.21 16 4 C -0.12 -1.03 9.68 -39.59 -0.38 -1.41 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 6 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 7 C -0.12 -1.03 9.29 -39.59 -0.37 -1.40 16 8 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 9 C -0.09 -0.99 4.65 -91.78 -0.43 -1.41 16 10 H 0.13 1.69 5.44 -51.93 -0.28 1.41 16 11 C -0.14 -1.45 9.56 -26.70 -0.26 -1.70 16 12 C -0.17 -1.96 5.21 -91.74 -0.48 -2.44 16 13 H 0.12 1.16 7.08 -51.93 -0.37 0.80 16 14 C 0.55 8.79 7.36 -10.98 -0.08 8.71 16 15 O -0.53 -10.62 15.43 5.56 0.09 -10.53 16 16 N -0.61 -9.10 3.07 -163.15 -0.50 -9.60 16 17 C 0.10 1.09 6.62 -2.65 -0.02 1.08 16 18 C -0.13 -1.42 7.07 -24.70 -0.17 -1.60 16 19 C -0.12 -1.78 6.08 -24.90 -0.15 -1.93 16 20 C 0.13 2.31 2.92 -66.95 -0.20 2.12 16 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 22 C 0.15 3.28 5.66 -4.04 -0.02 3.26 16 23 N -0.73 -19.27 5.45 -59.91 -0.33 -19.60 16 24 C -0.23 -6.79 9.99 -15.06 -0.15 -6.95 16 25 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 26 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 27 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 28 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 29 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 31 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 7.14 -51.93 -0.37 0.22 16 35 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.08 0.93 6.96 -51.93 -0.36 0.57 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.88 6.03 -52.49 -0.32 0.56 16 41 H 0.11 0.81 6.19 -51.93 -0.32 0.49 16 42 H 0.11 1.19 8.14 -51.92 -0.42 0.77 16 43 H 0.07 0.61 7.11 -51.92 -0.37 0.24 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.29 7.78 -51.93 -0.40 0.89 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 50 H 0.03 0.86 6.89 -51.93 -0.36 0.50 16 51 H 0.38 10.42 7.44 -40.82 -0.30 10.11 16 52 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 413.04 15.07 6.22 6.22 Total: -1.00 -34.30 413.04 -11.81 -46.11 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.49 Total: 8.72 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -4.51 Total: -11.34 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.10 Total: -57.28 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.30 -11.81 -46.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499920748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.977 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds