Wall clock time and date at job start Wed Apr 1 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 110.78028 * 2 1 4 4 C 1.34778 * 120.00139 * 303.24492 * 3 2 1 5 5 O 1.21284 * 119.99624 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00336 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47355 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.67201 * 55.00288 * 7 6 4 9 9 C 1.53316 * 109.67922 * 175.50618 * 7 6 4 10 10 C 1.52718 * 108.39069 * 189.55329 * 9 7 6 11 11 C 1.50632 * 110.60147 * 308.90126 * 10 9 7 12 12 C 1.38909 * 117.74929 * 197.48959 * 11 10 9 13 13 C 1.37938 * 120.54376 * 180.59019 * 12 11 10 14 14 C 1.38262 * 119.76737 * 359.97183 * 13 12 11 15 15 C 1.37932 * 119.77544 * 359.87296 * 14 13 12 16 16 C 1.37669 * 122.56037 * 17.82655 * 11 10 9 17 17 C 1.50622 * 122.56637 * 359.25332 * 16 11 10 18 18 C 1.55156 * 110.71903 * 123.23655 * 2 1 3 19 19 C 1.54906 * 101.61451 * 153.84569 * 18 2 1 20 20 N 1.47471 * 104.81210 * 323.04512 * 19 18 2 21 21 C 1.36936 * 125.62644 * 204.04433 * 20 19 18 22 22 H 1.08001 * 119.99967 * 180.02562 * 21 20 19 23 23 C 1.38816 * 120.00461 * 0.03195 * 21 20 19 24 24 N 1.31616 * 119.99418 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47127 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47089 * 119.99521 * 25 23 21 28 28 H 1.48496 * 109.46839 * 239.99358 * 25 23 21 29 29 C 1.47017 * 108.71970 * 24.07007 * 20 19 18 30 30 H 1.08999 * 109.46995 * 296.75991 * 1 2 3 31 31 H 1.09000 * 109.46730 * 56.76178 * 1 2 3 32 32 H 1.08996 * 109.47047 * 176.76013 * 1 2 3 33 33 H 0.97006 * 120.00043 * 123.23308 * 3 2 1 34 34 H 1.09003 * 109.46958 * 299.99855 * 6 4 3 35 35 H 1.09001 * 109.46717 * 59.99216 * 6 4 3 36 36 H 1.08996 * 109.68574 * 309.31495 * 9 7 6 37 37 H 1.08999 * 109.68549 * 69.86607 * 9 7 6 38 38 H 1.09007 * 109.26366 * 188.60211 * 10 9 7 39 39 H 1.08994 * 109.22686 * 69.18046 * 10 9 7 40 40 H 1.07992 * 119.72693 * 0.56553 * 12 11 10 41 41 H 1.07994 * 120.11938 * 179.97438 * 13 12 11 42 42 H 1.08004 * 120.11183 * 179.85133 * 14 13 12 43 43 H 1.08002 * 119.72770 * 180.02562 * 15 14 13 44 44 H 1.09007 * 109.25332 * 257.43872 * 17 16 11 45 45 H 1.09002 * 109.25402 * 138.01771 * 17 16 11 46 46 H 1.09002 * 111.00677 * 271.94153 * 18 2 1 47 47 H 1.09002 * 111.00564 * 35.75411 * 18 2 1 48 48 H 1.09008 * 110.36753 * 81.85112 * 19 18 2 49 49 H 1.09001 * 110.37094 * 204.16995 * 19 18 2 50 50 H 0.97005 * 119.99622 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.88206 * 239.55467 * 29 20 19 52 52 H 1.09007 * 109.88177 * 118.39340 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6907 2.2268 -0.9762 5 8 0.9375 1.8639 -1.8549 6 6 2.2248 3.6359 -0.9759 7 6 1.6670 4.3931 -2.1827 8 1 0.5781 4.3431 -2.1760 9 6 2.1169 5.8577 -2.1263 10 6 1.3579 6.6365 -3.1985 11 6 1.4715 5.9485 -4.5337 12 6 1.1695 6.6880 -5.6701 13 6 1.2425 6.1118 -6.9213 14 6 1.6199 4.7876 -7.0462 15 6 1.9234 4.0525 -5.9192 16 6 1.8520 4.6313 -4.6584 17 6 2.2024 3.7727 -3.4715 18 6 2.0790 -0.7954 1.2138 19 6 3.4632 -1.2506 0.6882 20 7 3.2445 -1.5507 -0.7390 21 6 4.0046 -2.3966 -1.5018 22 1 3.7618 -2.5499 -2.5430 23 6 5.0870 -3.0571 -0.9370 24 7 5.3830 -2.8698 0.3317 25 14 6.1234 -4.2115 -1.9775 26 1 5.5855 -4.2482 -3.3612 27 1 7.5272 -3.7279 -2.0044 28 1 6.0810 -5.5763 -1.3940 29 6 2.0760 -0.7911 -1.2072 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8596 32 1 -0.3633 -1.0260 -0.0581 33 1 2.6524 1.6598 0.7027 34 1 1.9207 4.1396 -0.0583 35 1 3.3130 3.6119 -1.0336 36 1 1.8939 6.2727 -1.1434 37 1 3.1882 5.9203 -2.3172 38 1 1.7737 7.6412 -3.2753 39 1 0.3070 6.7036 -2.9170 40 1 0.8746 7.7223 -5.5732 41 1 1.0058 6.6930 -7.8002 42 1 1.6767 4.3302 -8.0230 43 1 2.2185 3.0183 -6.0178 44 1 3.2863 3.6799 -3.4024 45 1 1.7652 2.7828 -3.6025 46 1 2.1850 -0.1518 2.0871 47 1 1.4448 -1.6532 1.4380 48 1 4.1936 -0.4491 0.7994 49 1 3.7953 -2.1436 1.2178 50 1 6.1397 -3.3311 0.7263 51 1 1.3130 -1.4757 -1.5775 52 1 2.3741 -0.1023 -1.9977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500282374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:57 Heat of formation + Delta-G solvation = -4.856370 kcal Electronic energy + Delta-G solvation = -30404.707468 eV Core-core repulsion = 26561.532063 eV Total energy + Delta-G solvation = -3843.175405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.42278 -39.63998 -37.58891 -36.22023 -33.96055 -32.80322 -32.08968 -31.30986 -29.99251 -29.21175 -28.65406 -26.99567 -25.65206 -23.81728 -23.53171 -22.23882 -22.13327 -20.52155 -20.15748 -19.34347 -18.93650 -17.13059 -16.67515 -16.34432 -15.87713 -15.61477 -15.17346 -14.79736 -14.67679 -14.49844 -14.14983 -13.81759 -13.67577 -13.34594 -13.30591 -12.99492 -12.95272 -12.75023 -12.40059 -12.22857 -12.07514 -11.96382 -11.71883 -11.61828 -11.54713 -11.49804 -11.27665 -10.92819 -10.86919 -10.81624 -10.59554 -10.37587 -10.37053 -10.30058 -10.05427 -9.89063 -9.63571 -9.11806 -8.79298 -8.65595 -8.59461 -8.51540 -6.80595 -5.65003 -3.05140 1.31912 1.34587 2.97118 3.40136 3.46217 3.48540 3.50252 3.70617 4.48609 4.50362 4.54076 4.72735 4.86436 4.91544 4.97558 5.03186 5.09009 5.20155 5.28842 5.36215 5.41556 5.44363 5.47074 5.51337 5.57527 5.59817 5.66206 5.68170 5.75687 5.76644 5.84068 5.90715 6.01151 6.03258 6.08968 6.19564 6.24125 6.31642 6.36140 6.39590 6.44411 6.48275 6.49374 6.55238 6.69449 6.74039 6.83971 6.99509 7.18166 7.45441 7.64568 7.81888 7.92804 8.35715 8.60773 9.23695 9.84523 10.49421 11.39405 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.002788 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.292524 B =10039.386339 C =11406.505040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 N -0.710 5.710 4 C 0.513 3.487 5 O -0.537 6.537 6 C -0.139 4.139 7 C -0.066 4.066 8 H 0.081 0.919 9 C -0.116 4.116 10 C -0.078 4.078 11 C -0.082 4.082 12 C -0.124 4.124 13 C -0.129 4.129 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.062 4.062 17 C -0.085 4.085 18 C -0.147 4.147 19 C 0.153 3.847 20 N -0.604 5.604 21 C -0.216 4.216 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.139 3.861 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.010 0.990 49 H 0.107 0.893 50 H 0.250 0.750 51 H 0.028 0.972 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 20.060 -3.365 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.074 3.926 3 N -0.360 5.360 4 C 0.300 3.700 5 O -0.414 6.414 6 C -0.179 4.179 7 C -0.085 4.085 8 H 0.100 0.900 9 C -0.154 4.154 10 C -0.115 4.115 11 C -0.082 4.082 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.062 4.062 17 C -0.122 4.122 18 C -0.186 4.186 19 C 0.028 3.972 20 N -0.330 5.330 21 C -0.345 4.345 22 H 0.095 0.905 23 C -0.208 4.208 24 N -0.574 5.574 25 Si 0.744 3.256 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.012 3.988 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.028 0.972 49 H 0.125 0.875 50 H 0.061 0.939 51 H 0.046 0.954 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.958 19.643 -3.996 21.956 hybrid contribution 0.995 -0.428 -0.272 1.117 sum -7.963 19.215 -4.268 21.233 Atomic orbital electron populations 1.22064 0.94288 1.02327 1.02304 1.21308 0.92972 0.80651 0.97700 1.46035 1.49444 1.12131 1.28417 1.20523 0.81001 0.87102 0.81413 1.90618 1.36165 1.78438 1.36211 1.21775 1.02521 0.93284 1.00279 1.20844 1.01188 0.93341 0.93128 0.90047 1.21632 1.00396 0.94878 0.98456 1.20433 1.01014 0.98370 0.91640 1.19624 0.99985 0.93495 0.95105 1.21105 1.01125 0.99593 0.92333 1.21005 1.01108 0.95422 0.97201 1.21063 1.00082 0.94537 0.98467 1.21254 1.00168 1.00146 0.92108 1.19732 0.98104 0.93373 0.95037 1.20707 1.00906 0.99614 0.90926 1.23356 1.01232 0.98856 0.95193 1.21933 0.89370 1.00569 0.85297 1.44525 1.30750 1.50343 1.07416 1.19139 1.05998 1.16388 0.92930 0.90541 1.24759 0.98833 1.00787 0.96462 1.69791 1.30125 1.46552 1.10922 0.86006 0.80017 0.80406 0.79174 1.20539 1.21819 1.21769 1.21585 0.90188 0.93057 0.93951 0.93367 0.90450 0.91989 0.76931 0.89070 0.88925 0.91325 0.91504 0.90963 0.90736 0.86536 0.86453 0.86305 0.86038 0.91038 0.88300 0.91974 0.90672 0.97214 0.87516 0.93882 0.95376 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.44 37.16 0.31 -2.08 16 2 C 0.16 2.81 0.81 -129.99 -0.11 2.71 16 3 N -0.71 -10.71 5.15 -45.91 -0.24 -10.95 16 4 C 0.51 7.55 6.81 -10.99 -0.07 7.48 16 5 O -0.54 -9.47 11.02 5.55 0.06 -9.41 16 6 C -0.14 -1.48 5.17 -27.89 -0.14 -1.62 16 7 C -0.07 -0.72 1.84 -90.60 -0.17 -0.89 16 8 H 0.08 1.00 7.92 -51.92 -0.41 0.59 16 9 C -0.12 -1.01 5.28 -26.71 -0.14 -1.15 16 10 C -0.08 -0.68 5.67 -28.06 -0.16 -0.84 16 11 C -0.08 -0.91 5.74 -104.61 -0.60 -1.51 16 12 C -0.12 -1.26 9.61 -39.44 -0.38 -1.64 16 13 C -0.13 -1.31 10.05 -39.68 -0.40 -1.71 16 14 C -0.12 -1.35 10.05 -39.68 -0.40 -1.75 16 15 C -0.12 -1.47 9.61 -39.44 -0.38 -1.85 16 16 C -0.06 -0.78 5.74 -104.62 -0.60 -1.38 16 17 C -0.08 -1.09 4.63 -28.06 -0.13 -1.22 16 18 C -0.15 -2.66 6.07 -24.58 -0.15 -2.81 16 19 C 0.15 3.60 5.87 -2.50 -0.01 3.59 16 20 N -0.60 -15.57 3.40 -170.04 -0.58 -16.15 16 21 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 24 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 25 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.14 3.07 6.19 -3.07 -0.02 3.06 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.32 5.97 -51.93 -0.31 1.01 16 32 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.40 5.16 8.49 -40.82 -0.35 4.81 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.12 0.93 8.05 -52.49 -0.42 0.50 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 43 H 0.12 1.46 8.05 -52.49 -0.42 1.04 16 44 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 45 H 0.10 1.53 6.18 -51.93 -0.32 1.21 16 46 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 47 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 48 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 49 H 0.11 2.85 5.88 -51.93 -0.31 2.54 16 50 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.03 0.64 7.76 -51.93 -0.40 0.24 16 52 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -31.99 398.62 -11.75 -43.74 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.74 Total: 6.05 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.80 Total: -10.37 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.25 Total: -53.27 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.06 Total: -9.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.99 -11.75 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500282374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.882 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds