Wall clock time and date at job start Wed Apr 1 2020 02:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 110.64592 * 2 1 4 4 C 1.34777 * 119.99828 * 59.01891 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 C 1.52990 * 109.47398 * 180.02562 * 6 4 3 8 8 H 1.09007 * 109.67768 * 55.00310 * 7 6 4 9 9 C 1.53327 * 109.68355 * 175.52075 * 7 6 4 10 10 C 1.52737 * 108.39986 * 189.58950 * 9 7 6 11 11 C 1.50631 * 110.59473 * 308.94841 * 10 9 7 12 12 C 1.38916 * 117.75417 * 197.66695 * 11 10 9 13 13 C 1.37934 * 120.54626 * 180.25192 * 12 11 10 14 14 C 1.38259 * 119.77521 * 0.03769 * 13 12 11 15 15 C 1.37936 * 119.76719 * 359.86946 * 14 13 12 16 16 C 1.37660 * 122.56819 * 17.72079 * 11 10 9 17 17 C 1.50640 * 122.57566 * 359.32036 * 16 11 10 18 18 C 1.55154 * 110.71981 * 236.85729 * 2 1 3 19 19 C 1.54914 * 101.58099 * 205.96029 * 18 2 1 20 20 N 1.47420 * 104.83180 * 37.01014 * 19 18 2 21 21 C 1.36937 * 125.64796 * 155.91316 * 20 19 18 22 22 H 1.07998 * 119.99928 * 179.97438 * 21 20 19 23 23 C 1.38816 * 119.99896 * 359.97336 * 21 20 19 24 24 N 1.31614 * 120.00015 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99804 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46955 * 90.00111 * 25 23 21 27 27 H 1.48495 * 109.47455 * 209.99984 * 25 23 21 28 28 H 1.48500 * 109.47166 * 330.00262 * 25 23 21 29 29 C 1.47487 * 108.75853 * 335.89072 * 20 19 18 30 30 H 1.09005 * 109.46685 * 60.70088 * 1 2 3 31 31 H 1.08993 * 109.47416 * 180.69863 * 1 2 3 32 32 H 1.08998 * 109.47427 * 300.70570 * 1 2 3 33 33 H 0.97001 * 120.00384 * 239.30338 * 3 2 1 34 34 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 35 35 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 36 36 H 1.09003 * 109.68134 * 309.31543 * 9 7 6 37 37 H 1.08991 * 109.67792 * 69.82671 * 9 7 6 38 38 H 1.08999 * 109.25048 * 69.23538 * 10 9 7 39 39 H 1.08997 * 109.25400 * 188.66226 * 10 9 7 40 40 H 1.08005 * 119.72520 * 0.24676 * 12 11 10 41 41 H 1.07997 * 120.10945 * 180.02562 * 13 12 11 42 42 H 1.07995 * 120.11513 * 179.84145 * 14 13 12 43 43 H 1.08000 * 119.72937 * 179.97438 * 15 14 13 44 44 H 1.09007 * 109.22178 * 257.49813 * 17 16 11 45 45 H 1.08997 * 109.30233 * 138.06364 * 17 16 11 46 46 H 1.09003 * 111.00887 * 324.03166 * 18 2 1 47 47 H 1.08998 * 111.00635 * 87.88592 * 18 2 1 48 48 H 1.09005 * 110.36395 * 155.84864 * 19 18 2 49 49 H 1.08991 * 110.36567 * 278.05903 * 19 18 2 50 50 H 0.96997 * 119.99868 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.03223 * 241.66293 * 29 20 19 52 52 H 1.09007 * 109.96230 * 120.35319 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7219 2.2133 1.0007 5 8 1.0063 1.8349 1.9039 6 6 2.2481 3.6255 0.9976 7 6 1.7347 4.3638 2.2352 8 1 2.0006 3.8051 3.1326 9 6 2.3560 5.7643 2.2959 10 6 2.0195 6.3827 3.6513 11 6 0.5410 6.2891 3.9240 12 6 0.0112 7.1142 4.9080 13 6 -1.3344 7.0722 5.2084 14 6 -2.1634 6.2015 4.5256 15 6 -1.6396 5.3828 3.5468 16 6 -0.2853 5.4257 3.2408 17 6 0.2169 4.5128 2.1529 18 6 2.0789 -0.7934 -1.2151 19 6 3.4652 -1.2448 -0.6912 20 7 3.2493 -1.5471 0.7354 21 6 4.0124 -2.3918 1.4965 22 1 3.7712 -2.5469 2.5377 23 6 5.0959 -3.0490 0.9297 24 7 5.3900 -2.8596 -0.3391 25 14 6.1371 -4.2008 1.9681 26 1 5.5806 -5.5754 1.8918 27 1 7.5318 -4.2024 1.4583 28 1 6.1267 -3.7402 3.3799 29 6 2.0759 -0.7891 1.2086 30 1 -0.3633 0.5029 -0.8963 31 1 -0.3634 -1.0275 0.0125 32 1 -0.3634 0.5247 0.8836 33 1 2.6188 1.6736 -0.7223 34 1 3.3378 3.6071 1.0118 35 1 1.9052 4.1390 0.0993 36 1 3.4379 5.6911 2.1843 37 1 1.9458 6.3827 1.4976 38 1 2.5634 5.8527 4.4331 39 1 2.3195 7.4306 3.6527 40 1 0.6583 7.7941 5.4423 41 1 -1.7389 7.7171 5.9744 42 1 -3.2173 6.1623 4.7581 43 1 -2.2877 4.7026 3.0142 44 1 -0.0511 4.9300 1.1821 45 1 -0.2470 3.5325 2.2625 46 1 1.4469 -1.6530 -1.4384 47 1 2.1821 -0.1490 -2.0882 48 1 3.7992 -2.1365 -1.2217 49 1 4.1934 -0.4417 -0.8046 50 1 6.1469 -3.3191 -0.7353 51 1 2.3711 -0.0991 1.9992 52 1 1.3139 -1.4754 1.5781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500282375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:02 Heat of formation + Delta-G solvation = -4.801914 kcal Electronic energy + Delta-G solvation = -30262.119852 eV Core-core repulsion = 26418.946808 eV Total energy + Delta-G solvation = -3843.173044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.44593 -39.65311 -37.57739 -36.22806 -33.95429 -32.83577 -32.09718 -31.33021 -29.98556 -29.24765 -28.64395 -27.01642 -25.65057 -23.85289 -23.52089 -22.27446 -22.17916 -20.53463 -20.15242 -19.35936 -18.93334 -17.12497 -16.67385 -16.38391 -15.89545 -15.61773 -15.19790 -14.81576 -14.67353 -14.53490 -14.17105 -13.80504 -13.71433 -13.37049 -13.34039 -13.06121 -12.91779 -12.73203 -12.40462 -12.23872 -12.09435 -12.02924 -11.74074 -11.59024 -11.54891 -11.52926 -11.30396 -10.92169 -10.84599 -10.83877 -10.63933 -10.39791 -10.32776 -10.31505 -10.07298 -9.88546 -9.63490 -9.13298 -8.84704 -8.64651 -8.61827 -8.53708 -6.79722 -5.63844 -3.03887 1.26680 1.28903 2.98124 3.41326 3.46491 3.48425 3.50531 3.65102 4.46192 4.50854 4.52342 4.71744 4.83088 4.87558 4.94499 5.00461 5.07034 5.18175 5.27395 5.32770 5.37754 5.41964 5.46182 5.51370 5.57317 5.59916 5.60993 5.68689 5.73671 5.76099 5.81414 5.87301 5.95764 5.99777 6.07513 6.18244 6.23275 6.27474 6.34734 6.39038 6.39791 6.42799 6.48154 6.54118 6.63351 6.73661 6.85552 6.93682 7.19094 7.46417 7.64737 7.82568 7.92985 8.36599 8.61432 9.24811 9.85208 10.50451 11.40531 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016586 B = 0.002397 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.736968 B =11680.892878 C =12176.679640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.160 3.840 3 N -0.710 5.710 4 C 0.513 3.487 5 O -0.536 6.536 6 C -0.138 4.138 7 C -0.068 4.068 8 H 0.083 0.917 9 C -0.116 4.116 10 C -0.080 4.080 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.129 4.129 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.064 4.064 17 C -0.082 4.082 18 C -0.147 4.147 19 C 0.154 3.846 20 N -0.605 5.605 21 C -0.216 4.216 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.925 5.925 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.137 3.863 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.396 0.604 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.010 0.990 50 H 0.251 0.749 51 H 0.033 0.967 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 20.967 1.835 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.074 3.926 3 N -0.361 5.361 4 C 0.300 3.700 5 O -0.414 6.414 6 C -0.178 4.178 7 C -0.087 4.087 8 H 0.102 0.898 9 C -0.153 4.153 10 C -0.116 4.116 11 C -0.079 4.079 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.064 4.064 17 C -0.119 4.119 18 C -0.186 4.186 19 C 0.029 3.971 20 N -0.331 5.331 21 C -0.345 4.345 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.575 5.575 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.011 3.989 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.230 0.770 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.125 0.875 49 H 0.028 0.972 50 H 0.062 0.938 51 H 0.051 0.949 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.246 20.546 2.480 23.554 hybrid contribution 0.854 -0.379 0.211 0.958 sum -10.392 20.167 2.691 22.846 Atomic orbital electron populations 1.22043 0.94401 1.02156 1.02222 1.21309 0.92881 0.80666 0.97772 1.46035 1.51765 1.12353 1.25909 1.20517 0.80625 0.87165 0.81736 1.90627 1.37509 1.77712 1.35532 1.21765 1.02576 0.93251 1.00206 1.20865 0.94843 0.94982 0.98040 0.89832 1.21629 1.00732 0.95955 0.96994 1.20456 0.91894 1.01236 0.98061 1.19648 0.95642 0.96227 0.96408 1.21134 0.95411 0.99573 0.97955 1.21010 0.93881 0.99537 1.00226 1.21045 0.99632 0.96741 0.96826 1.21203 0.94946 0.99445 0.98210 1.19726 0.93168 0.96245 0.97298 1.20689 0.95661 0.99617 0.95889 1.23352 1.01260 0.98847 0.95141 1.21910 0.89345 1.00566 0.85299 1.44618 1.30604 1.50495 1.07379 1.19102 1.05895 1.16520 0.92957 0.90595 1.24756 0.98816 1.00819 0.96474 1.69775 1.30220 1.46577 1.10894 0.86074 0.79550 0.80762 0.79167 1.21622 1.21710 1.20785 1.21681 0.90139 0.93110 0.93985 0.93326 0.91967 0.90778 0.76969 0.88789 0.89225 0.91176 0.91631 0.90540 0.90910 0.86458 0.86425 0.86352 0.86219 0.91321 0.88421 0.90673 0.91982 0.87532 0.97238 0.93841 0.94880 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.40 37.16 0.31 -2.02 16 2 C 0.16 2.81 0.81 -129.99 -0.10 2.71 16 3 N -0.71 -10.71 5.15 -45.92 -0.24 -10.95 16 4 C 0.51 7.58 6.80 -10.98 -0.07 7.51 16 5 O -0.54 -9.53 10.99 5.55 0.06 -9.47 16 6 C -0.14 -1.48 5.17 -27.89 -0.14 -1.62 16 7 C -0.07 -0.75 1.84 -90.59 -0.17 -0.92 16 8 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 9 C -0.12 -1.01 5.28 -26.70 -0.14 -1.16 16 10 C -0.08 -0.71 5.67 -28.05 -0.16 -0.87 16 11 C -0.08 -0.85 5.74 -104.62 -0.60 -1.45 16 12 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 13 C -0.13 -1.22 10.05 -39.68 -0.40 -1.62 16 14 C -0.12 -1.23 10.05 -39.68 -0.40 -1.63 16 15 C -0.12 -1.32 9.61 -39.44 -0.38 -1.70 16 16 C -0.06 -0.75 5.74 -104.61 -0.60 -1.35 16 17 C -0.08 -0.94 4.63 -28.05 -0.13 -1.07 16 18 C -0.15 -2.65 6.08 -24.58 -0.15 -2.80 16 19 C 0.15 3.63 5.87 -2.53 -0.01 3.61 16 20 N -0.60 -15.70 3.41 -169.70 -0.58 -16.28 16 21 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 24 N -0.93 -26.86 10.09 55.49 0.56 -26.30 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 29 C 0.14 3.07 6.20 -2.81 -0.02 3.05 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 32 H 0.07 1.24 6.19 -51.93 -0.32 0.91 16 33 H 0.40 5.12 8.48 -40.82 -0.35 4.78 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.76 8.11 -51.93 -0.42 0.33 16 36 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.12 0.92 8.05 -52.48 -0.42 0.49 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 1.19 8.05 -52.49 -0.42 0.77 16 44 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.10 1.33 6.18 -51.93 -0.32 1.01 16 46 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 47 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 48 H 0.11 2.85 5.88 -51.93 -0.31 2.55 16 49 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.03 0.80 6.69 -51.93 -0.35 0.45 16 52 H 0.03 0.66 7.80 -51.92 -0.41 0.26 16 LS Contribution 398.66 15.07 6.01 6.01 Total: -1.00 -32.27 398.66 -11.75 -44.02 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.75 Total: 5.34 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.80 Total: -9.72 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.25 Total: -53.53 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.27 -11.75 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500282375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.218 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds