Wall clock time and date at job start Wed Apr 1 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38232 * 119.99738 * 2 1 4 4 C 1.38234 * 119.99713 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47054 * 90.00352 * 6 5 4 8 8 H 1.09007 * 109.47235 * 305.00067 * 7 6 5 9 9 C 1.53001 * 109.47133 * 65.00007 * 7 6 5 10 10 C 1.50703 * 109.47385 * 185.00023 * 7 6 5 11 11 O 1.21284 * 119.99824 * 359.72590 * 10 7 6 12 12 N 1.34775 * 120.00107 * 179.97438 * 10 7 6 13 13 C 1.46500 * 120.00046 * 179.72754 * 12 10 7 14 14 C 1.53000 * 109.47282 * 180.02562 * 13 12 10 15 15 H 1.09005 * 115.51166 * 330.41174 * 14 13 12 16 16 C 1.53002 * 117.44203 * 184.99856 * 14 13 12 17 17 H 1.08999 * 119.54146 * 4.11529 * 16 14 13 18 18 C 1.54386 * 118.12216 * 159.21376 * 16 14 13 19 19 N 1.51825 * 102.86756 * 88.01620 * 18 16 14 20 20 C 1.36938 * 127.61082 * 140.54547 * 19 18 16 21 21 H 1.08000 * 120.00393 * 194.62834 * 20 19 18 22 22 C 1.38819 * 119.99762 * 14.62859 * 20 19 18 23 23 N 1.31615 * 120.00152 * 8.91935 * 22 20 19 24 24 Si 1.86797 * 119.99664 * 188.91590 * 22 20 19 25 25 H 1.48505 * 109.46925 * 94.08824 * 24 22 20 26 26 H 1.48502 * 109.46912 * 214.08536 * 24 22 20 27 27 H 1.48490 * 109.47635 * 334.08775 * 24 22 20 28 28 C 1.48144 * 104.55164 * 320.26876 * 19 18 16 29 29 C 1.52998 * 117.44262 * 115.75711 * 14 13 12 30 30 H 1.08996 * 119.54353 * 355.88174 * 29 14 13 31 31 C 1.38231 * 119.99407 * 0.25678 * 5 4 3 32 32 C 1.38227 * 119.99895 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47337 * 89.99801 * 1 2 3 34 34 H 1.08994 * 109.47373 * 210.00072 * 1 2 3 35 35 H 1.09002 * 109.46977 * 329.99789 * 1 2 3 36 36 H 1.08005 * 120.00593 * 0.02562 * 3 2 1 37 37 H 1.07999 * 120.00111 * 179.97438 * 4 3 2 38 38 H 1.09001 * 109.47135 * 330.00606 * 6 5 4 39 39 H 1.08997 * 109.47158 * 209.99954 * 6 5 4 40 40 H 1.09004 * 109.47166 * 180.02562 * 9 7 6 41 41 H 1.08995 * 109.46748 * 299.99458 * 9 7 6 42 42 H 1.08994 * 109.46966 * 60.00215 * 9 7 6 43 43 H 0.96996 * 120.00077 * 359.72627 * 12 10 7 44 44 H 1.09005 * 109.46648 * 300.00034 * 13 12 10 45 45 H 1.08999 * 109.47469 * 59.99379 * 13 12 10 46 46 H 1.08994 * 110.40645 * 205.97784 * 18 16 14 47 47 H 1.09006 * 110.40247 * 328.40451 * 18 16 14 48 48 H 0.96993 * 120.00483 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.41020 * 281.07451 * 28 19 18 50 50 H 1.08998 * 110.40596 * 158.64468 * 28 19 18 51 51 H 1.08003 * 119.99538 * 179.72673 * 31 5 4 52 52 H 1.08002 * 120.00239 * 359.97438 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 6.2898 -0.0008 1.4393 8 1 5.8556 0.8408 1.9792 9 6 5.8855 -1.3085 2.1230 10 6 7.7917 0.1231 1.4401 11 8 8.3945 0.1989 0.3904 12 7 8.4655 0.1444 2.6071 13 6 9.9261 0.2588 2.6077 14 6 10.4370 0.2594 4.0499 15 1 9.7523 0.6729 4.7904 16 6 11.9339 0.4894 4.2675 17 1 12.5735 0.7107 3.4130 18 6 12.4011 0.9762 5.6561 19 7 12.6064 -0.3211 6.4177 20 6 13.6088 -0.6221 7.3008 21 1 13.7797 -1.6471 7.5949 22 6 14.4054 0.3904 7.8180 23 7 14.0915 1.6502 7.6016 24 14 15.9225 -0.0352 8.8211 25 1 17.1124 -0.0597 7.9328 26 1 16.1174 0.9861 9.8814 27 1 15.7441 -1.3701 9.4465 28 6 11.4773 -1.1827 5.9965 29 6 11.3222 -0.9103 4.4848 30 1 11.5061 -1.7316 3.7922 31 6 3.5805 -1.1971 -0.0075 32 6 2.1982 -1.1971 -0.0005 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3633 0.8900 0.5139 36 1 1.6582 2.1325 0.0004 37 1 4.1205 2.1324 -0.0010 38 1 6.1416 0.8902 -0.5164 39 1 6.1416 -0.8898 -0.5173 40 1 6.2493 -1.3088 3.1506 41 1 4.7993 -1.3979 2.1225 42 1 6.3198 -2.1499 1.5832 43 1 7.9835 0.0841 3.4467 44 1 10.3568 -0.5861 2.0703 45 1 10.2180 1.1878 2.1180 46 1 13.3404 1.5224 5.5711 47 1 11.6366 1.6023 6.1163 48 1 14.6483 2.3576 7.9626 49 1 10.5675 -0.9040 6.5283 50 1 11.7143 -2.2321 6.1713 51 1 4.1206 -2.1324 -0.0128 52 1 1.6582 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506828177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:42 Heat of formation + Delta-G solvation = 26.454584 kcal Electronic energy + Delta-G solvation = -28303.080746 eV Core-core repulsion = 24461.263085 eV Total energy + Delta-G solvation = -3841.817661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.35739 -39.53877 -38.63718 -35.60970 -34.90089 -33.31988 -32.48600 -31.24723 -30.74174 -28.72885 -27.36687 -27.08421 -25.86489 -24.90516 -23.17947 -22.80136 -21.17883 -20.99079 -20.39428 -19.48926 -19.17453 -17.38429 -16.80487 -16.33026 -15.98142 -15.95921 -15.37623 -15.34045 -14.84041 -14.44166 -14.27682 -14.19138 -13.91211 -13.71059 -13.59800 -13.23103 -12.98353 -12.84310 -12.76569 -12.66410 -12.50404 -12.35151 -12.23414 -11.83087 -11.48244 -11.38261 -11.29863 -11.22865 -11.12321 -11.09147 -10.84788 -10.67151 -10.35165 -10.12409 -9.90829 -9.68175 -9.40659 -9.21732 -9.13650 -8.94266 -8.77489 -8.66367 -6.88663 -5.79509 -3.12790 1.00124 1.09586 2.57955 3.08410 3.38116 3.43528 3.44505 3.45415 4.12635 4.37582 4.45577 4.46453 4.54640 4.59848 4.67816 4.71667 4.84684 4.91125 4.94368 5.10685 5.18242 5.20410 5.27037 5.31108 5.35948 5.40395 5.43985 5.47075 5.48476 5.51010 5.56087 5.74021 5.76028 5.78190 5.86931 5.89828 5.91688 5.92512 5.94631 6.11487 6.21903 6.27814 6.36053 6.36763 6.55197 6.65155 6.69045 6.70888 6.89777 7.30062 7.46275 7.51181 7.69858 8.14659 8.16656 9.06005 9.72654 10.49321 11.35388 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.030252 B = 0.001521 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.332757 B =18406.539528 C =18582.595900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.083 4.083 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.147 4.147 10 C 0.515 3.485 11 O -0.545 6.545 12 N -0.723 5.723 13 C 0.154 3.846 14 C -0.152 4.152 15 H 0.102 0.898 16 C -0.161 4.161 17 H 0.102 0.898 18 C 0.183 3.817 19 N -0.600 5.600 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.157 3.843 29 C -0.169 4.169 30 H 0.103 0.897 31 C -0.110 4.110 32 C -0.120 4.120 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.401 0.599 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.029 0.971 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.049 0.951 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.168 -3.107 -15.556 30.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.099 4.099 7 C -0.125 4.125 8 H 0.116 0.884 9 C -0.205 4.205 10 C 0.301 3.699 11 O -0.422 6.422 12 N -0.374 5.374 13 C 0.031 3.969 14 C -0.171 4.171 15 H 0.120 0.880 16 C -0.181 4.181 17 H 0.120 0.880 18 C 0.059 3.941 19 N -0.325 5.325 20 C -0.353 4.353 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.564 5.564 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.031 3.969 29 C -0.189 4.189 30 H 0.121 0.879 31 C -0.128 4.128 32 C -0.138 4.138 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.068 0.932 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.491 -2.968 -16.115 30.304 hybrid contribution 0.596 -0.149 0.934 1.118 sum -24.895 -3.117 -15.181 29.325 Atomic orbital electron populations 1.20791 0.91353 1.02737 1.02244 1.19921 0.96017 0.93286 1.00080 1.21026 0.94180 0.97506 1.01021 1.21078 0.94109 0.97729 1.00103 1.19871 0.95470 0.93184 0.99755 1.20400 0.90067 1.04493 0.94986 1.21265 0.91932 1.00939 0.98381 0.88430 1.21870 1.02567 0.95636 1.00411 1.20600 0.89738 0.75899 0.83673 1.90702 1.70412 1.49685 1.31387 1.46063 1.08096 1.74542 1.08682 1.20874 0.78793 1.01889 0.95370 1.22551 0.94947 1.04123 0.95463 0.87975 1.24139 0.91925 1.00256 1.01780 0.87984 1.21721 1.00098 0.88301 0.83964 1.46101 1.25529 1.11591 1.49260 1.19041 1.06147 0.92722 1.17393 0.90565 1.24859 1.00318 0.95230 0.99974 1.69878 1.38978 0.98066 1.49505 0.86104 0.82940 0.77308 0.79421 1.21562 1.21695 1.20551 1.21081 0.91237 0.95193 0.89423 1.23998 1.04007 0.91650 0.99200 0.87937 1.21079 0.94034 0.97694 1.00019 1.21028 0.94197 0.97488 1.01130 0.91282 0.91602 0.91604 0.86197 0.86018 0.90047 0.90240 0.91901 0.91055 0.91982 0.76396 0.91502 0.91199 0.89065 0.95280 0.93607 0.96023 0.93211 0.85983 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 4 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 5 C -0.08 -0.68 4.70 -104.63 -0.49 -1.17 16 6 C -0.06 -0.55 4.19 -27.89 -0.12 -0.66 16 7 C -0.10 -0.89 2.71 -91.77 -0.25 -1.14 16 8 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 9 C -0.15 -1.07 8.67 37.16 0.32 -0.75 16 10 C 0.51 6.11 7.15 -10.98 -0.08 6.04 16 11 O -0.54 -8.56 15.92 5.55 0.09 -8.47 16 12 N -0.72 -8.07 5.45 -60.29 -0.33 -8.40 16 13 C 0.15 2.05 5.95 -4.04 -0.02 2.03 16 14 C -0.15 -2.27 5.38 -90.62 -0.49 -2.76 16 15 H 0.10 1.51 8.04 -51.93 -0.42 1.10 16 16 C -0.16 -2.99 6.76 -89.22 -0.60 -3.59 16 17 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 18 C 0.18 4.33 5.92 -0.30 0.00 4.33 16 19 N -0.60 -15.28 3.45 -165.71 -0.57 -15.85 16 20 C -0.22 -6.26 10.36 -15.06 -0.16 -6.41 16 21 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 22 C -0.01 -0.20 5.42 -17.43 -0.09 -0.29 16 23 N -0.92 -26.75 10.82 55.49 0.60 -26.15 16 24 Si 0.91 21.92 29.56 -169.99 -5.03 16.89 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 28 C 0.16 3.23 7.05 -2.41 -0.02 3.22 16 29 C -0.17 -2.92 6.74 -89.22 -0.60 -3.52 16 30 H 0.10 1.66 8.12 -51.93 -0.42 1.23 16 31 C -0.11 -0.84 7.98 -39.58 -0.32 -1.15 16 32 C -0.12 -0.87 9.70 -39.59 -0.38 -1.25 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 39 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.06 0.42 7.57 -51.93 -0.39 0.02 16 41 H 0.07 0.48 6.28 -51.93 -0.33 0.15 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.40 3.62 7.83 -40.82 -0.32 3.30 16 44 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 2.42 6.56 -51.93 -0.34 2.08 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.12 0.79 8.05 -52.48 -0.42 0.37 16 52 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 418.54 15.07 6.31 6.31 Total: -1.00 -32.27 418.54 -12.17 -44.44 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.92 Total: 2.36 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -4.32 Total: -11.12 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.30 Total: -50.40 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.27 -12.17 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506828177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.895 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds