Wall clock time and date at job start Wed Apr 1 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38234 * 119.99421 * 2 1 4 4 C 1.38234 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00234 * 359.95676 * 4 3 2 6 6 C 1.50700 * 120.00084 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46983 * 90.00002 * 6 5 4 8 8 H 1.08999 * 109.47573 * 55.00102 * 7 6 5 9 9 C 1.53005 * 109.47182 * 294.99558 * 7 6 5 10 10 C 1.50706 * 109.47011 * 174.99777 * 7 6 5 11 11 O 1.21281 * 120.00082 * 0.02562 * 10 7 6 12 12 N 1.34778 * 119.99584 * 179.97438 * 10 7 6 13 13 C 1.46498 * 119.99387 * 179.97438 * 12 10 7 14 14 C 1.53003 * 109.47185 * 180.02562 * 13 12 10 15 15 H 1.08997 * 115.51371 * 330.42188 * 14 13 12 16 16 C 1.52995 * 117.44574 * 185.00083 * 14 13 12 17 17 H 1.08993 * 119.54082 * 4.12251 * 16 14 13 18 18 C 1.54387 * 118.12127 * 160.81248 * 16 14 13 19 19 N 1.48145 * 104.61898 * 87.19228 * 18 16 14 20 20 C 1.36938 * 127.83797 * 140.39282 * 19 18 16 21 21 H 1.07997 * 120.00174 * 195.59524 * 20 19 18 22 22 C 1.38813 * 120.00281 * 15.59576 * 20 19 18 23 23 N 1.31623 * 119.99740 * 9.09589 * 22 20 19 24 24 Si 1.86796 * 120.00296 * 189.09755 * 22 20 19 25 25 H 1.48501 * 109.47167 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47090 * 119.99904 * 24 22 20 27 27 H 1.48498 * 109.47402 * 239.99816 * 24 22 20 28 28 C 1.48137 * 104.32431 * 320.41233 * 19 18 16 29 29 C 1.52997 * 117.44057 * 115.75971 * 14 13 12 30 30 H 1.08997 * 119.54258 * 355.88883 * 29 14 13 31 31 C 1.38237 * 120.00022 * 0.27421 * 5 4 3 32 32 C 1.38235 * 120.00283 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47467 * 90.00146 * 1 2 3 34 34 H 1.09002 * 109.47184 * 210.00124 * 1 2 3 35 35 H 1.09003 * 109.47488 * 329.99492 * 1 2 3 36 36 H 1.08001 * 120.00511 * 359.97438 * 3 2 1 37 37 H 1.08002 * 120.00425 * 179.97438 * 4 3 2 38 38 H 1.09002 * 109.46743 * 209.99778 * 6 5 4 39 39 H 1.08990 * 109.47221 * 330.00009 * 6 5 4 40 40 H 1.08992 * 109.47121 * 179.97438 * 9 7 6 41 41 H 1.08991 * 109.47022 * 300.00697 * 9 7 6 42 42 H 1.08999 * 109.46374 * 60.00146 * 9 7 6 43 43 H 0.96999 * 120.00427 * 0.02562 * 12 10 7 44 44 H 1.08995 * 109.47553 * 300.00081 * 13 12 10 45 45 H 1.08999 * 109.47334 * 60.00747 * 13 12 10 46 46 H 1.09003 * 110.40554 * 205.97433 * 18 16 14 47 47 H 1.08998 * 110.41090 * 328.40331 * 18 16 14 48 48 H 0.97004 * 120.00000 * 179.97438 * 23 22 20 49 49 H 1.09000 * 110.41163 * 280.80223 * 28 19 18 50 50 H 1.09001 * 110.51236 * 158.42126 * 28 19 18 51 51 H 1.07996 * 120.00642 * 179.72859 * 31 5 4 52 52 H 1.07999 * 119.99973 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0002 6 6 5.7787 0.0003 -0.0002 7 6 6.2886 0.0007 1.4423 8 1 5.8541 -0.8409 1.9817 9 6 5.8838 1.3084 2.1260 10 6 7.7906 -0.1230 1.4442 11 8 8.3937 -0.2032 0.3951 12 7 8.4635 -0.1436 2.6118 13 6 9.9235 -0.2645 2.6135 14 6 10.4336 -0.2639 4.0560 15 1 9.8267 0.2950 4.7684 16 6 11.9488 -0.2643 4.2682 17 1 12.6122 -0.1968 3.4061 18 6 12.4912 0.1837 5.6424 19 7 12.4912 -1.0488 6.4644 20 6 13.4362 -1.4559 7.3680 21 1 13.4482 -2.4793 7.7127 22 6 14.3786 -0.5531 7.8411 23 7 14.2593 0.7282 7.5645 24 14 15.8160 -1.1566 8.8701 25 1 15.7218 -2.6293 9.0366 26 1 17.0905 -0.8167 8.1877 27 1 15.7790 -0.5038 10.2034 28 6 11.2373 -1.7412 6.0866 29 6 11.1220 -1.5336 4.5610 30 1 11.1695 -2.4116 3.9169 31 6 3.5806 -1.1970 -0.0050 32 6 2.1982 -1.1971 0.0005 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3634 0.8899 0.5139 36 1 1.6580 2.1325 -0.0004 37 1 4.1204 2.1326 -0.0010 38 1 6.1420 -0.8899 -0.5137 39 1 6.1419 0.8900 -0.5142 40 1 6.2467 1.3085 3.1537 41 1 6.3184 2.1499 1.5866 42 1 4.7975 1.3978 2.1246 43 1 7.9812 -0.0791 3.4508 44 1 10.2116 -1.1964 2.1271 45 1 10.3585 0.5767 2.0738 46 1 13.5041 0.5738 5.5424 47 1 11.8357 0.9347 6.0834 48 1 14.9177 1.3591 7.8954 49 1 10.3858 -1.2910 6.5968 50 1 11.3019 -2.8036 6.3217 51 1 4.1205 -2.1323 -0.0091 52 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506828181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:46 Heat of formation + Delta-G solvation = 24.519120 kcal Electronic energy + Delta-G solvation = -28303.313316 eV Core-core repulsion = 24461.411727 eV Total energy + Delta-G solvation = -3841.901589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.35904 -39.54872 -38.74784 -35.62121 -34.95960 -33.39467 -32.48927 -31.24754 -30.81984 -28.73069 -27.35061 -27.11740 -25.86817 -24.94319 -23.18185 -22.80308 -21.17716 -20.99088 -20.37578 -19.52002 -19.23333 -17.37241 -16.82777 -16.34041 -15.97945 -15.95441 -15.39438 -15.34169 -14.87521 -14.42164 -14.35316 -14.12953 -13.89106 -13.74747 -13.53404 -13.37849 -12.96649 -12.85270 -12.73313 -12.67016 -12.56989 -12.35135 -12.22834 -11.84666 -11.48491 -11.38806 -11.30870 -11.24575 -11.12779 -11.10389 -10.85769 -10.65930 -10.31978 -10.11881 -9.90730 -9.75490 -9.41058 -9.21776 -9.13265 -8.94176 -8.77435 -8.65560 -6.88402 -5.81680 -3.15949 1.00136 1.09613 2.58112 3.08216 3.36548 3.42751 3.44518 3.45177 4.12251 4.37445 4.45278 4.45644 4.54649 4.59830 4.67747 4.71679 4.84573 4.90594 4.94357 5.10994 5.18338 5.20497 5.28779 5.30851 5.38114 5.40401 5.43139 5.46176 5.48000 5.51385 5.56090 5.75370 5.77068 5.79820 5.87258 5.88824 5.91838 5.92684 5.96499 6.11514 6.21422 6.27833 6.36086 6.36781 6.54953 6.64956 6.69636 6.70923 6.90342 7.34024 7.46375 7.51749 7.70399 8.16667 8.19226 9.09367 9.72157 10.49116 11.32724 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.029773 B = 0.001522 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.231368 B =18387.793827 C =18573.237444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.083 4.083 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.098 0.902 9 C -0.148 4.148 10 C 0.515 3.485 11 O -0.544 6.544 12 N -0.723 5.723 13 C 0.154 3.846 14 C -0.150 4.150 15 H 0.102 0.898 16 C -0.162 4.162 17 H 0.103 0.897 18 C 0.184 3.816 19 N -0.595 5.595 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.915 5.915 24 Si 0.912 3.088 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.154 3.846 29 C -0.172 4.172 30 H 0.102 0.898 31 C -0.112 4.112 32 C -0.119 4.119 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.402 0.598 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.023 0.977 48 H 0.254 0.746 49 H 0.023 0.977 50 H 0.049 0.951 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.267 0.239 -15.481 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.083 4.083 6 C -0.099 4.099 7 C -0.125 4.125 8 H 0.116 0.884 9 C -0.205 4.205 10 C 0.301 3.699 11 O -0.422 6.422 12 N -0.374 5.374 13 C 0.031 3.969 14 C -0.169 4.169 15 H 0.120 0.880 16 C -0.182 4.182 17 H 0.121 0.879 18 C 0.058 3.942 19 N -0.318 5.318 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.028 3.972 29 C -0.191 4.191 30 H 0.120 0.880 31 C -0.130 4.130 32 C -0.137 4.137 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.236 0.764 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.041 0.959 48 H 0.064 0.936 49 H 0.041 0.959 50 H 0.068 0.932 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.575 0.240 -16.046 30.193 hybrid contribution 0.554 -0.255 0.932 1.114 sum -25.021 -0.015 -15.114 29.231 Atomic orbital electron populations 1.20791 0.91354 1.02737 1.02242 1.19922 0.96016 0.93286 1.00081 1.21030 0.94199 0.97487 1.01125 1.21081 0.94034 0.97698 1.00013 1.19873 0.95471 0.93184 0.99755 1.20402 0.90070 1.04496 0.94980 1.21266 0.91930 1.00937 0.98377 0.88416 1.21873 1.02593 0.95657 1.00390 1.20601 0.89740 0.75903 0.83662 1.90701 1.70371 1.49670 1.31441 1.46062 1.08150 1.74485 1.08687 1.20869 0.78812 1.01883 0.95364 1.22527 0.96669 1.02299 0.95373 0.87978 1.24234 0.90312 1.01940 1.01741 0.87900 1.21061 1.00828 0.88490 0.83794 1.45213 1.19087 1.21942 1.45566 1.19049 1.05604 0.94287 1.16577 0.90526 1.24897 1.00375 0.95112 0.99897 1.69909 1.36203 1.00609 1.49464 0.86046 0.82244 0.77938 0.79521 1.20350 1.21595 1.21681 1.21133 0.89950 0.96626 0.89512 1.23994 1.05127 0.91265 0.98760 0.87957 1.21077 0.94108 0.97724 1.00108 1.21026 0.94178 0.97503 1.01026 0.91284 0.91604 0.91602 0.86201 0.85974 0.90052 0.90231 0.91931 0.91959 0.91036 0.76389 0.91501 0.91176 0.89180 0.95885 0.93599 0.95886 0.93207 0.86024 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.11 -0.84 7.96 -39.58 -0.32 -1.15 16 5 C -0.08 -0.68 4.71 -104.62 -0.49 -1.17 16 6 C -0.06 -0.55 4.19 -27.88 -0.12 -0.66 16 7 C -0.10 -0.89 2.71 -91.77 -0.25 -1.14 16 8 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 9 C -0.15 -1.07 8.66 37.16 0.32 -0.75 16 10 C 0.51 6.13 7.15 -10.98 -0.08 6.05 16 11 O -0.54 -8.57 15.92 5.56 0.09 -8.48 16 12 N -0.72 -8.10 5.45 -60.29 -0.33 -8.43 16 13 C 0.15 2.06 5.95 -4.04 -0.02 2.04 16 14 C -0.15 -2.25 5.39 -90.62 -0.49 -2.74 16 15 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 16 C -0.16 -3.03 6.85 -89.22 -0.61 -3.64 16 17 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 18 C 0.18 4.37 5.70 -2.41 -0.01 4.36 16 19 N -0.59 -15.16 3.38 -168.86 -0.57 -15.73 16 20 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 21 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 22 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 23 N -0.92 -26.69 10.87 55.49 0.60 -26.09 16 24 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.15 3.18 7.04 -2.41 -0.02 3.16 16 29 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 30 H 0.10 1.66 8.12 -51.93 -0.42 1.24 16 31 C -0.11 -0.89 9.70 -39.58 -0.38 -1.27 16 32 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.79 8.04 -52.49 -0.42 0.37 16 38 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 39 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.48 6.27 -51.93 -0.33 0.16 16 43 H 0.40 3.64 7.82 -40.82 -0.32 3.32 16 44 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 52 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 418.23 15.07 6.30 6.30 Total: -1.00 -32.24 418.23 -12.19 -44.43 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.92 Total: 2.41 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -4.34 Total: -11.24 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.30 Total: -50.24 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.24 -12.19 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506828181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.947 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds