Wall clock time and date at job start Wed Apr 1 2020 02:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34786 * 119.99511 * 2 1 4 4 O 1.21278 * 119.99454 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00028 * 359.97438 * 3 2 1 6 6 H 1.08998 * 115.55152 * 359.56514 * 5 3 2 7 7 C 1.52997 * 117.49624 * 213.89496 * 5 3 2 8 8 C 1.52998 * 117.49556 * 145.23661 * 5 3 2 9 9 C 1.53006 * 117.49866 * 214.97627 * 8 5 3 10 10 C 1.50696 * 117.50087 * 359.97438 * 8 5 3 11 11 C 1.38228 * 120.00152 * 293.42743 * 10 8 5 12 12 C 1.38237 * 120.00305 * 179.74013 * 11 10 8 13 13 C 1.38245 * 119.99762 * 0.55510 * 12 11 10 14 14 C 1.38236 * 119.99513 * 359.69985 * 13 12 11 15 15 C 1.38230 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.46493 * 120.00412 * 179.97438 * 2 1 3 17 17 H 1.08996 * 109.47440 * 180.02562 * 16 2 1 18 18 C 1.53010 * 109.46839 * 299.99930 * 16 2 1 19 19 N 1.46491 * 109.47310 * 304.99832 * 18 16 2 20 20 C 1.36937 * 120.00322 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99399 * 359.73454 * 20 19 18 22 22 C 1.38811 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00062 * 359.73937 * 22 20 19 24 24 Si 1.86801 * 119.99921 * 179.72885 * 22 20 19 25 25 H 1.48500 * 109.46901 * 60.00381 * 24 22 20 26 26 H 1.48497 * 109.47079 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47184 * 300.00438 * 24 22 20 28 28 C 1.52995 * 109.47293 * 59.99838 * 16 2 1 29 29 C 1.53003 * 117.49971 * 248.74963 * 28 16 2 30 30 C 1.52998 * 117.50252 * 180.08925 * 28 16 2 31 31 H 1.09005 * 109.47373 * 269.99989 * 1 2 3 32 32 H 1.08998 * 109.47418 * 30.00214 * 1 2 3 33 33 H 1.08999 * 109.46991 * 150.00394 * 1 2 3 34 34 H 1.09002 * 117.50105 * 0.02562 * 7 5 3 35 35 H 1.09001 * 117.50070 * 145.02411 * 7 5 3 36 36 H 1.08997 * 109.46521 * 60.00011 * 9 8 5 37 37 H 1.08995 * 109.47309 * 179.97438 * 9 8 5 38 38 H 1.09001 * 109.46852 * 300.00593 * 9 8 5 39 39 H 1.07999 * 120.00268 * 359.97438 * 11 10 8 40 40 H 1.08002 * 120.00639 * 180.27102 * 12 11 10 41 41 H 1.07997 * 120.00129 * 179.72248 * 13 12 11 42 42 H 1.08005 * 119.99562 * 180.02562 * 14 13 12 43 43 H 1.08006 * 119.99822 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47005 * 184.99678 * 18 16 2 45 45 H 1.08997 * 109.46776 * 65.00194 * 18 16 2 46 46 H 0.97003 * 120.00178 * 0.02562 * 19 18 16 47 47 H 0.96995 * 119.99908 * 179.97438 * 23 22 20 48 48 H 1.09002 * 115.54897 * 34.41509 * 28 16 2 49 49 H 1.08994 * 117.49730 * 359.97438 * 29 28 16 50 50 H 1.09007 * 117.49483 * 145.02202 * 29 28 16 51 51 H 1.08993 * 117.50449 * 214.98220 * 30 28 16 52 52 H 1.09004 * 117.49652 * 359.97435 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4724 -0.0006 6 1 0.2986 2.3878 -0.0084 7 6 2.0078 3.6472 -0.7574 8 6 1.9972 3.6418 0.7732 9 6 1.0369 4.6033 1.4764 10 6 3.3071 3.4003 1.4781 11 6 3.3655 2.5270 2.5480 12 6 4.5681 2.3013 3.1912 13 6 5.7101 2.9578 2.7717 14 6 5.6506 3.8352 1.7051 15 6 4.4491 4.0564 1.0584 16 6 2.1975 -1.2686 0.0006 17 1 3.2692 -1.0694 0.0009 18 6 1.8279 -2.0704 1.2503 19 7 2.0707 -1.2552 2.4430 20 6 1.8103 -1.7664 3.6864 21 1 1.4220 -2.7690 3.7874 22 6 2.0408 -0.9941 4.8166 23 7 2.5145 0.2277 4.6934 24 14 1.6785 -1.6888 6.5123 25 1 2.5010 -2.9050 6.7350 26 1 2.0072 -0.6726 7.5441 27 1 0.2388 -2.0408 6.6058 28 6 1.8280 -2.0715 -1.2482 29 6 1.0117 -3.3503 -1.0500 30 6 2.4914 -3.4379 -1.4316 31 1 -0.3634 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 2.9623 3.4762 -1.2553 35 1 1.3308 4.3359 -1.2629 36 1 0.4429 4.0540 2.2067 37 1 1.6080 5.3807 1.9838 38 1 0.3758 5.0598 0.7397 39 1 2.4723 2.0180 2.8791 40 1 4.6147 1.6157 4.0244 41 1 6.6488 2.7850 3.2771 42 1 6.5429 4.3477 1.3771 43 1 4.4026 4.7422 0.2253 44 1 2.4377 -2.9726 1.2966 45 1 0.7742 -2.3458 1.2067 46 1 2.4152 -0.3530 2.3519 47 1 2.6752 0.7674 5.4831 48 1 1.6317 -1.4830 -2.1445 49 1 0.7383 -3.6198 -0.0299 50 1 0.2786 -3.6032 -1.8161 51 1 2.7314 -3.7485 -2.4485 52 1 3.1916 -3.7647 -0.6628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507018937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:15 Heat of formation + Delta-G solvation = 68.079618 kcal Electronic energy + Delta-G solvation = -32069.343787 eV Core-core repulsion = 28229.331123 eV Total energy + Delta-G solvation = -3840.012664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.32458 -38.86836 -37.59515 -36.23436 -34.82155 -33.93194 -31.14039 -30.13104 -29.97820 -28.62806 -28.00802 -26.30695 -24.69325 -23.34871 -22.56095 -22.47330 -21.89676 -21.55008 -19.83700 -18.83996 -18.22450 -17.12817 -17.04797 -16.31601 -15.85668 -15.11172 -14.97306 -14.41682 -14.30978 -14.11818 -13.98554 -13.82853 -13.47700 -13.13321 -12.93953 -12.86849 -12.69489 -12.56221 -12.46970 -12.29322 -12.05293 -11.79842 -11.67700 -11.49878 -11.45177 -11.25104 -11.01201 -10.78457 -10.72804 -10.47106 -10.33770 -10.30266 -10.09627 -10.05140 -9.73279 -9.66030 -9.57881 -9.16969 -8.81936 -8.15951 -8.02669 -7.87759 -6.85659 -5.71064 -2.99062 2.10095 2.27140 2.92521 3.33634 3.44607 3.49966 3.50250 4.00665 4.09510 4.53880 4.60051 4.74427 4.90617 4.92727 5.02319 5.10029 5.15092 5.17097 5.29751 5.40127 5.51527 5.58154 5.59351 5.70031 5.75865 5.76986 5.77676 5.81854 5.85243 5.92476 5.94039 5.97827 6.04936 6.13205 6.17842 6.18347 6.28857 6.31588 6.35079 6.38299 6.43545 6.50751 6.51560 6.76882 6.82020 6.91694 7.09322 7.21145 7.42331 7.57552 7.72423 7.88970 7.89439 8.47440 8.75086 9.59065 10.16803 10.54586 11.49666 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007325 B = 0.006002 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3821.669433 B = 4664.239899 C = 6908.497022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.594 5.594 3 C 0.545 3.455 4 O -0.524 6.524 5 C -0.181 4.181 6 H 0.120 0.880 7 C -0.142 4.142 8 C -0.047 4.047 9 C -0.112 4.112 10 C -0.048 4.048 11 C -0.068 4.068 12 C -0.091 4.091 13 C -0.135 4.135 14 C -0.134 4.134 15 C -0.115 4.115 16 C 0.164 3.836 17 H 0.101 0.899 18 C 0.144 3.856 19 N -0.726 5.726 20 C -0.239 4.239 21 H 0.065 0.935 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.903 3.097 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.289 1.289 28 C -0.157 4.157 29 C -0.184 4.184 30 C -0.174 4.174 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.024 0.976 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.253 0.747 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 5.406 -12.576 14.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.327 5.327 3 C 0.333 3.667 4 O -0.399 6.399 5 C -0.202 4.202 6 H 0.138 0.862 7 C -0.179 4.179 8 C -0.048 4.048 9 C -0.169 4.169 10 C -0.048 4.048 11 C -0.086 4.086 12 C -0.109 4.109 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.133 4.133 16 C 0.060 3.940 17 H 0.119 0.881 18 C 0.015 3.985 19 N -0.371 5.371 20 C -0.370 4.370 21 H 0.083 0.917 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.735 3.265 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.177 4.177 29 C -0.221 4.221 30 C -0.211 4.211 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.223 0.777 47 H 0.063 0.937 48 H 0.120 0.880 49 H 0.125 0.875 50 H 0.106 0.894 51 H 0.109 0.891 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.824 5.307 -12.426 13.804 hybrid contribution -0.266 -0.383 0.914 1.026 sum -3.090 4.924 -11.512 12.896 Atomic orbital electron populations 1.21723 0.80226 1.01829 1.02365 1.47463 1.06556 1.05205 1.73445 1.19418 0.87379 0.84014 0.75883 1.90722 1.13417 1.86736 1.49059 1.22511 0.99829 0.89348 1.08553 0.86241 1.23167 1.02577 0.98245 0.93935 1.20115 0.95245 0.96999 0.92422 1.21357 0.97562 0.97866 1.00085 1.18784 0.91785 0.97891 0.96308 1.21210 0.99537 0.94648 0.93209 1.21333 0.91988 0.97666 0.99896 1.21111 0.98314 0.98109 0.97784 1.20833 0.96978 1.00035 0.97411 1.20624 0.92482 1.00514 0.99713 1.20760 0.97863 0.82524 0.92823 0.88066 1.21093 0.97566 0.93492 0.86340 1.42296 1.78722 1.15862 1.00174 1.19122 1.36096 0.98029 0.83753 0.91694 1.24637 1.02107 0.96438 0.97223 1.69585 1.50776 1.08485 1.28075 0.86347 0.77719 0.77705 0.84769 1.21610 1.21799 1.21651 1.22596 1.05420 0.90052 0.99621 1.23197 0.93972 1.01630 1.03324 1.22942 0.96101 0.99717 1.02363 0.91958 0.91831 0.91374 0.87908 0.88176 0.91507 0.91632 0.92342 0.84460 0.84982 0.87467 0.87520 0.87585 0.95802 0.95816 0.77689 0.93665 0.88033 0.87520 0.89369 0.89140 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 9.29 59.85 0.56 1.69 16 2 N -0.59 -9.98 2.24 -173.94 -0.39 -10.37 16 3 C 0.54 9.88 6.41 -10.98 -0.07 9.81 16 4 O -0.52 -11.24 13.57 5.56 0.08 -11.17 16 5 C -0.18 -2.69 5.28 -91.77 -0.48 -3.18 16 6 H 0.12 1.51 5.97 -51.93 -0.31 1.20 16 7 C -0.14 -1.84 9.02 -26.69 -0.24 -2.08 16 8 C -0.05 -0.71 2.19 -155.62 -0.34 -1.05 16 9 C -0.11 -1.41 9.84 37.16 0.37 -1.04 16 10 C -0.05 -0.86 3.23 -104.63 -0.34 -1.20 16 11 C -0.07 -1.43 8.36 -39.59 -0.33 -1.76 16 12 C -0.09 -1.93 10.05 -39.58 -0.40 -2.32 16 13 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 14 C -0.13 -2.28 10.05 -39.59 -0.40 -2.68 16 15 C -0.12 -1.96 9.31 -39.58 -0.37 -2.32 16 16 C 0.16 2.88 2.59 -67.93 -0.18 2.70 16 17 H 0.10 2.09 6.90 -51.93 -0.36 1.73 16 18 C 0.14 2.88 4.19 -4.04 -0.02 2.86 16 19 N -0.73 -18.04 5.43 -59.91 -0.33 -18.37 16 20 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -25.44 11.60 55.49 0.64 -24.80 16 24 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C -0.16 -2.18 4.96 -90.62 -0.45 -2.63 16 29 C -0.18 -2.28 9.51 -26.69 -0.25 -2.53 16 30 C -0.17 -2.18 9.94 -26.69 -0.27 -2.45 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.71 6.00 -51.93 -0.31 0.40 16 33 H 0.07 0.83 7.20 -51.93 -0.37 0.46 16 34 H 0.10 1.47 7.89 -51.93 -0.41 1.06 16 35 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 39 H 0.14 3.28 7.20 -52.49 -0.38 2.90 16 40 H 0.13 3.05 7.44 -52.49 -0.39 2.66 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.11 1.55 7.90 -52.48 -0.41 1.14 16 44 H 0.02 0.50 7.44 -51.93 -0.39 0.11 16 45 H 0.02 0.47 6.30 -51.93 -0.33 0.14 16 46 H 0.39 10.27 7.06 -40.82 -0.29 9.98 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.11 1.45 5.80 -51.93 -0.30 1.15 16 50 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 52 H 0.10 1.31 7.66 -51.93 -0.40 0.91 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -30.23 411.21 -11.08 -41.31 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -8.40 Total: 18.27 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -3.85 Total: -18.02 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.07 Total: -53.53 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.23 -11.08 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507018937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.390 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds