Wall clock time and date at job start Wed Apr 1 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99730 * 2 1 4 4 O 1.21285 * 119.99697 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00103 * 359.97438 * 3 2 1 6 6 H 1.09003 * 115.56270 * 65.21271 * 5 3 2 7 7 C 1.53000 * 117.49868 * 279.52593 * 5 3 2 8 8 C 1.53000 * 60.00089 * 252.51077 * 7 5 3 9 9 C 1.53000 * 117.50044 * 252.48940 * 8 7 5 10 10 C 1.50697 * 117.49824 * 107.49169 * 8 7 5 11 11 C 1.38237 * 119.99632 * 186.30183 * 10 8 7 12 12 C 1.38240 * 119.99516 * 179.74171 * 11 10 8 13 13 C 1.38234 * 120.00265 * 0.54999 * 12 11 10 14 14 C 1.38240 * 119.99547 * 359.70583 * 13 12 11 15 15 C 1.38226 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.46498 * 120.00548 * 179.97438 * 2 1 3 17 17 H 1.08999 * 109.47867 * 180.02562 * 16 2 1 18 18 C 1.53004 * 109.47075 * 59.99814 * 16 2 1 19 19 N 1.46505 * 109.46882 * 55.00139 * 18 16 2 20 20 C 1.36935 * 119.99722 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99738 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00484 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47395 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47404 * 120.00308 * 24 22 20 27 27 H 1.48503 * 109.47072 * 240.00101 * 24 22 20 28 28 C 1.52999 * 109.46996 * 300.00281 * 16 2 1 29 29 C 1.52995 * 117.49960 * 248.61859 * 28 16 2 30 30 C 1.52998 * 60.00348 * 252.51098 * 29 28 16 31 31 H 1.08997 * 109.47167 * 90.00411 * 1 2 3 32 32 H 1.09002 * 109.46722 * 210.00036 * 1 2 3 33 33 H 1.09001 * 109.47193 * 329.99674 * 1 2 3 34 34 H 1.08999 * 117.49893 * 145.02014 * 7 5 3 35 35 H 1.08997 * 117.50065 * 0.02562 * 7 5 3 36 36 H 1.09005 * 109.46741 * 8.60441 * 9 8 7 37 37 H 1.08994 * 109.47503 * 128.60114 * 9 8 7 38 38 H 1.09004 * 109.47190 * 248.60745 * 9 8 7 39 39 H 1.07997 * 120.00551 * 359.97438 * 11 10 8 40 40 H 1.07999 * 119.99797 * 180.27670 * 12 11 10 41 41 H 1.07999 * 120.00444 * 179.72127 * 13 12 11 42 42 H 1.07998 * 119.99716 * 180.02562 * 14 13 12 43 43 H 1.08006 * 120.00233 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.47420 * 175.00521 * 18 16 2 45 45 H 1.09010 * 109.47083 * 295.00486 * 18 16 2 46 46 H 0.96998 * 119.99876 * 0.02562 * 19 18 16 47 47 H 0.96996 * 120.00100 * 179.97438 * 23 22 20 48 48 H 1.09003 * 115.55220 * 34.32830 * 28 16 2 49 49 H 1.09004 * 117.49689 * 359.97438 * 29 28 16 50 50 H 1.08994 * 117.50336 * 145.01751 * 29 28 16 51 51 H 1.09006 * 117.49766 * 252.51601 * 30 29 28 52 52 H 1.08998 * 117.52173 * 107.47895 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.7928 2.6737 0.8919 7 6 0.8381 2.9715 -1.3393 8 6 2.0408 3.6662 -0.6977 9 6 1.8146 5.0516 -0.0891 10 6 3.3905 3.4471 -1.3311 11 6 4.5285 3.9412 -0.7214 12 6 5.7672 3.7356 -1.2998 13 6 5.8667 3.0457 -2.4936 14 6 4.7281 2.5562 -3.1059 15 6 3.4901 2.7571 -2.5247 16 6 2.1976 -1.2686 0.0006 17 1 3.2693 -1.0695 0.0009 18 6 1.8280 -2.0716 -1.2483 19 7 2.0707 -1.2573 -2.4418 20 6 1.8104 -1.7697 -3.6847 21 1 1.4257 -2.7739 -3.7852 22 6 2.0409 -0.9985 -4.8156 23 7 2.5101 0.2251 -4.6933 24 14 1.6850 -1.6972 -6.5111 25 1 1.1677 -3.0827 -6.3770 26 1 0.6694 -0.8538 -7.1909 27 1 2.9347 -1.7103 -7.3133 28 6 1.8280 -2.0704 1.2501 29 6 2.9097 -2.2558 2.3161 30 6 2.4931 -3.4358 1.4358 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 -0.1144 3.5013 -1.3276 35 1 1.0228 2.3558 -2.2196 36 1 0.7476 5.2744 -0.0796 37 1 2.1981 5.0674 0.9311 38 1 2.3368 5.8000 -0.6852 39 1 4.4504 4.4846 0.2086 40 1 6.6567 4.1177 -0.8212 41 1 6.8339 2.8890 -2.9477 42 1 4.8058 2.0169 -4.0383 43 1 2.6004 2.3750 -3.0033 44 1 2.4378 -2.9739 -1.2938 45 1 0.7742 -2.3470 -1.2045 46 1 2.4159 -0.3553 -2.3516 47 1 2.6715 0.7639 -5.4836 48 1 0.7984 -1.9616 1.5911 49 1 3.8849 -1.8070 2.1270 50 1 2.5920 -2.2688 3.3586 51 1 1.9010 -4.2251 1.8992 52 1 3.1936 -3.7630 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507018939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:20 Heat of formation + Delta-G solvation = 64.351924 kcal Electronic energy + Delta-G solvation = -32017.716316 eV Core-core repulsion = 28177.542007 eV Total energy + Delta-G solvation = -3840.174309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.30302 -38.80825 -37.44982 -36.24670 -35.00661 -33.89426 -31.22299 -30.38129 -29.94551 -28.63712 -27.93237 -26.36177 -24.47875 -23.45632 -22.59131 -22.36291 -21.59430 -21.50533 -20.02184 -19.10374 -18.40483 -17.13626 -16.87976 -16.41192 -15.77737 -15.20423 -14.74138 -14.65502 -14.40418 -14.04707 -13.92522 -13.76462 -13.47133 -13.11014 -13.01713 -12.93964 -12.73768 -12.61653 -12.38992 -12.28275 -12.05350 -11.80419 -11.71291 -11.46240 -11.41241 -11.40058 -11.03048 -10.83334 -10.68440 -10.50669 -10.36399 -10.30382 -10.09741 -10.07054 -9.79158 -9.71582 -9.59890 -9.16175 -8.83111 -8.12808 -8.07237 -7.84391 -6.84551 -5.70741 -2.98178 2.03526 2.20925 3.12831 3.32543 3.44110 3.50859 3.52012 3.90331 4.02281 4.55926 4.60167 4.77494 4.86752 4.90954 5.02484 5.07756 5.13251 5.18187 5.29472 5.46422 5.49123 5.55854 5.60276 5.67386 5.73661 5.75313 5.78799 5.80310 5.85266 5.86392 5.94089 6.00452 6.03969 6.07147 6.19922 6.21591 6.22681 6.25830 6.30588 6.35709 6.38824 6.52655 6.56178 6.74524 6.81058 6.84128 7.11561 7.16236 7.33366 7.45470 7.74333 7.79421 7.89719 8.47265 8.76060 9.59590 10.17742 10.55315 11.50474 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.005965 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.474457 B = 4692.595854 C = 6821.322215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.593 5.593 3 C 0.545 3.455 4 O -0.519 6.519 5 C -0.171 4.171 6 H 0.121 0.879 7 C -0.151 4.151 8 C -0.059 4.059 9 C -0.110 4.110 10 C -0.037 4.037 11 C -0.108 4.108 12 C -0.131 4.131 13 C -0.134 4.134 14 C -0.094 4.094 15 C -0.085 4.085 16 C 0.164 3.836 17 H 0.098 0.902 18 C 0.149 3.851 19 N -0.726 5.726 20 C -0.236 4.236 21 H 0.066 0.934 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.901 3.099 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.158 4.158 29 C -0.178 4.178 30 C -0.171 4.171 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.026 0.974 45 H 0.020 0.980 46 H 0.387 0.613 47 H 0.251 0.749 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 5.720 13.023 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.326 5.326 3 C 0.332 3.668 4 O -0.394 6.394 5 C -0.192 4.192 6 H 0.139 0.861 7 C -0.187 4.187 8 C -0.060 4.060 9 C -0.167 4.167 10 C -0.037 4.037 11 C -0.126 4.126 12 C -0.149 4.149 13 C -0.152 4.152 14 C -0.112 4.112 15 C -0.102 4.102 16 C 0.061 3.939 17 H 0.116 0.884 18 C 0.020 3.980 19 N -0.370 5.370 20 C -0.367 4.367 21 H 0.084 0.916 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.733 3.267 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.178 4.178 29 C -0.215 4.215 30 C -0.209 4.209 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.043 0.957 45 H 0.037 0.963 46 H 0.222 0.778 47 H 0.061 0.939 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.107 0.893 51 H 0.111 0.889 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.441 5.611 12.887 14.265 hybrid contribution -0.269 -0.391 -0.877 0.997 sum -2.710 5.220 12.010 13.372 Atomic orbital electron populations 1.21650 0.80190 1.01556 1.02439 1.47507 1.06559 1.05221 1.73299 1.19494 0.87432 0.83954 0.75916 1.90731 1.13396 1.86676 1.48581 1.22312 1.04516 0.93684 0.98705 0.86083 1.23390 0.97030 1.02580 0.95749 1.20184 0.92119 0.92478 1.01191 1.21324 1.01421 0.93592 1.00343 1.18741 0.91784 0.98341 0.94802 1.20580 0.92154 1.00984 0.98875 1.20847 0.96747 1.00850 0.96433 1.21050 0.98185 0.99648 0.96296 1.21149 0.92179 0.97608 1.00269 1.21232 0.99066 0.95663 0.94283 1.20846 0.97809 0.82467 0.92808 0.88362 1.20911 0.97588 0.93430 0.86068 1.42285 1.78683 1.15868 1.00207 1.19216 1.35857 0.97945 0.83725 0.91558 1.24639 1.02215 0.96455 0.97234 1.69644 1.51094 1.08512 1.27759 0.86207 0.77277 0.77891 0.85289 1.20903 1.22120 1.22099 1.22566 0.97885 0.99317 0.97997 1.22986 0.99769 1.02936 0.95854 1.22907 1.03821 0.91172 1.02962 0.91838 0.91770 0.91872 0.88096 0.86532 0.92240 0.92201 0.91628 0.87567 0.87435 0.87379 0.85829 0.84637 0.95674 0.96269 0.77802 0.93862 0.87802 0.88746 0.89289 0.88942 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 9.39 59.85 0.56 1.72 16 2 N -0.59 -9.87 2.24 -173.93 -0.39 -10.26 16 3 C 0.54 9.83 6.65 -10.99 -0.07 9.75 16 4 O -0.52 -11.19 13.83 5.55 0.08 -11.11 16 5 C -0.17 -2.51 4.18 -91.77 -0.38 -2.89 16 6 H 0.12 1.44 7.82 -51.93 -0.41 1.03 16 7 C -0.15 -2.20 9.19 -26.73 -0.25 -2.45 16 8 C -0.06 -0.88 2.50 -155.66 -0.39 -1.27 16 9 C -0.11 -1.25 9.07 37.16 0.34 -0.91 16 10 C -0.04 -0.65 3.24 -104.63 -0.34 -0.99 16 11 C -0.11 -1.82 9.23 -39.58 -0.37 -2.19 16 12 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 13 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 14 C -0.09 -1.92 10.05 -39.59 -0.40 -2.32 16 15 C -0.08 -1.72 8.73 -39.59 -0.35 -2.07 16 16 C 0.16 2.88 2.42 -67.93 -0.16 2.71 16 17 H 0.10 2.02 6.65 -51.93 -0.35 1.68 16 18 C 0.15 3.02 5.32 -4.04 -0.02 2.99 16 19 N -0.73 -18.11 5.43 -59.90 -0.33 -18.43 16 20 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -25.71 13.00 55.49 0.72 -24.99 16 24 Si 0.90 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C -0.16 -2.19 5.15 -90.62 -0.47 -2.66 16 29 C -0.18 -2.27 10.18 -26.73 -0.27 -2.54 16 30 C -0.17 -2.14 9.79 -26.73 -0.26 -2.40 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 33 H 0.06 0.70 6.68 -51.93 -0.35 0.35 16 34 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.12 2.14 6.14 -51.93 -0.32 1.82 16 36 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.11 1.57 7.68 -52.49 -0.40 1.17 16 40 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.12 2.67 8.06 -52.49 -0.42 2.25 16 43 H 0.14 3.03 5.92 -52.48 -0.31 2.72 16 44 H 0.03 0.53 7.47 -51.93 -0.39 0.14 16 45 H 0.02 0.39 7.84 -51.92 -0.41 -0.02 16 46 H 0.39 10.32 7.07 -40.82 -0.29 10.03 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.10 1.31 6.59 -51.93 -0.34 0.96 16 49 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 50 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.10 1.31 7.66 -51.93 -0.40 0.92 16 LS Contribution 414.96 15.07 6.25 6.25 Total: -1.00 -30.72 414.96 -11.02 -41.74 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -8.46 Total: 17.60 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -3.87 Total: -17.83 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.01 Total: -53.68 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.72 -11.02 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507018939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.091 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds