Wall clock time and date at job start Wed Apr 1 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99730 * 2 1 4 4 O 1.21285 * 119.99697 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00103 * 359.97438 * 3 2 1 6 6 H 1.09003 * 115.56270 * 65.21271 * 5 3 2 7 7 C 1.53000 * 117.49868 * 279.52593 * 5 3 2 8 8 C 1.53000 * 60.00089 * 252.51077 * 7 5 3 9 9 C 1.53000 * 117.50044 * 252.48940 * 8 7 5 10 10 C 1.50697 * 117.49824 * 107.49169 * 8 7 5 11 11 C 1.38237 * 119.99632 * 186.30183 * 10 8 7 12 12 C 1.38240 * 119.99516 * 179.74171 * 11 10 8 13 13 C 1.38234 * 120.00265 * 0.54999 * 12 11 10 14 14 C 1.38240 * 119.99547 * 359.70583 * 13 12 11 15 15 C 1.38226 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.46498 * 120.00548 * 179.97438 * 2 1 3 17 17 H 1.08999 * 109.47867 * 180.02562 * 16 2 1 18 18 C 1.53004 * 109.47075 * 59.99814 * 16 2 1 19 19 N 1.46505 * 109.46882 * 55.00139 * 18 16 2 20 20 C 1.36935 * 119.99722 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00306 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99738 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00484 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47395 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47404 * 120.00308 * 24 22 20 27 27 H 1.48503 * 109.47072 * 240.00101 * 24 22 20 28 28 C 1.52999 * 109.46996 * 300.00281 * 16 2 1 29 29 C 1.52995 * 117.49960 * 248.61859 * 28 16 2 30 30 C 1.52998 * 60.00348 * 252.51098 * 29 28 16 31 31 H 1.08997 * 109.47167 * 90.00411 * 1 2 3 32 32 H 1.09002 * 109.46722 * 210.00036 * 1 2 3 33 33 H 1.09001 * 109.47193 * 329.99674 * 1 2 3 34 34 H 1.08999 * 117.49893 * 145.02014 * 7 5 3 35 35 H 1.08997 * 117.50065 * 0.02562 * 7 5 3 36 36 H 1.09005 * 109.46741 * 8.60441 * 9 8 7 37 37 H 1.08994 * 109.47503 * 128.60114 * 9 8 7 38 38 H 1.09004 * 109.47190 * 248.60745 * 9 8 7 39 39 H 1.07997 * 120.00551 * 359.97438 * 11 10 8 40 40 H 1.07999 * 119.99797 * 180.27670 * 12 11 10 41 41 H 1.07999 * 120.00444 * 179.72127 * 13 12 11 42 42 H 1.07998 * 119.99716 * 180.02562 * 14 13 12 43 43 H 1.08006 * 120.00233 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.47420 * 175.00521 * 18 16 2 45 45 H 1.09010 * 109.47083 * 295.00486 * 18 16 2 46 46 H 0.96998 * 119.99876 * 0.02562 * 19 18 16 47 47 H 0.96996 * 120.00100 * 179.97438 * 23 22 20 48 48 H 1.09003 * 115.55220 * 34.32830 * 28 16 2 49 49 H 1.09004 * 117.49689 * 359.97438 * 29 28 16 50 50 H 1.08994 * 117.50336 * 145.01751 * 29 28 16 51 51 H 1.09006 * 117.49766 * 252.51601 * 30 29 28 52 52 H 1.08998 * 117.52173 * 107.47895 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.7928 2.6737 0.8919 7 6 0.8381 2.9715 -1.3393 8 6 2.0408 3.6662 -0.6977 9 6 1.8146 5.0516 -0.0891 10 6 3.3905 3.4471 -1.3311 11 6 4.5285 3.9412 -0.7214 12 6 5.7672 3.7356 -1.2998 13 6 5.8667 3.0457 -2.4936 14 6 4.7281 2.5562 -3.1059 15 6 3.4901 2.7571 -2.5247 16 6 2.1976 -1.2686 0.0006 17 1 3.2693 -1.0695 0.0009 18 6 1.8280 -2.0716 -1.2483 19 7 2.0707 -1.2573 -2.4418 20 6 1.8104 -1.7697 -3.6847 21 1 1.4257 -2.7739 -3.7852 22 6 2.0409 -0.9985 -4.8156 23 7 2.5101 0.2251 -4.6933 24 14 1.6850 -1.6972 -6.5111 25 1 1.1677 -3.0827 -6.3770 26 1 0.6694 -0.8538 -7.1909 27 1 2.9347 -1.7103 -7.3133 28 6 1.8280 -2.0704 1.2501 29 6 2.9097 -2.2558 2.3161 30 6 2.4931 -3.4358 1.4358 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 -0.1144 3.5013 -1.3276 35 1 1.0228 2.3558 -2.2196 36 1 0.7476 5.2744 -0.0796 37 1 2.1981 5.0674 0.9311 38 1 2.3368 5.8000 -0.6852 39 1 4.4504 4.4846 0.2086 40 1 6.6567 4.1177 -0.8212 41 1 6.8339 2.8890 -2.9477 42 1 4.8058 2.0169 -4.0383 43 1 2.6004 2.3750 -3.0033 44 1 2.4378 -2.9739 -1.2938 45 1 0.7742 -2.3470 -1.2045 46 1 2.4159 -0.3553 -2.3516 47 1 2.6715 0.7639 -5.4836 48 1 0.7984 -1.9616 1.5911 49 1 3.8849 -1.8070 2.1270 50 1 2.5920 -2.2688 3.3586 51 1 1.9010 -4.2251 1.8992 52 1 3.1936 -3.7630 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507018939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:19 Heat of formation + Delta-G solvation = 49.090405 kcal Electronic energy + Delta-G solvation = -32018.378105 eV Core-core repulsion = 28177.542007 eV Total energy + Delta-G solvation = -3840.836098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.61087 -40.13903 -38.75371 -37.50906 -36.51459 -35.60758 -33.11379 -31.78726 -31.35963 -30.05811 -29.15221 -27.61441 -26.20104 -24.90605 -23.90371 -23.63042 -22.99444 -22.88356 -21.26768 -20.44338 -19.72005 -19.07770 -18.23976 -17.75826 -17.09839 -16.60469 -16.51065 -16.01528 -15.70856 -15.47377 -15.31268 -15.27605 -14.85494 -14.78538 -14.47890 -14.17420 -14.10436 -13.92960 -13.67954 -13.60028 -13.27186 -13.13035 -12.96288 -12.88916 -12.86893 -12.73726 -12.65177 -12.40439 -12.20261 -12.05316 -11.84741 -11.74122 -11.70609 -11.40291 -11.22540 -10.96226 -10.93498 -10.85913 -10.51752 -9.57282 -9.45160 -9.22852 -8.91123 -7.84038 -5.13705 0.62985 0.75184 1.44599 1.46090 1.54557 1.76824 2.06733 2.56247 2.72099 2.91575 3.19985 3.45184 3.54910 3.66518 3.76612 3.88121 3.97348 4.02143 4.07617 4.14836 4.18898 4.28922 4.32165 4.37188 4.41958 4.46350 4.48120 4.60533 4.68781 4.76282 4.78987 4.81743 4.89507 4.90907 4.95824 4.99967 5.02307 5.04185 5.07170 5.10237 5.17711 5.26548 5.30736 5.31642 5.38533 5.41543 5.52813 5.74144 5.75741 5.87050 5.99136 6.32307 6.35661 6.58915 7.39077 7.41524 8.14946 8.41808 9.34825 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.005965 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.474457 B = 4692.595854 C = 6821.322215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.593 5.593 3 C 0.533 3.467 4 O -0.564 6.564 5 C -0.162 4.162 6 H 0.163 0.837 7 C -0.148 4.148 8 C -0.065 4.065 9 C -0.103 4.103 10 C -0.038 4.038 11 C -0.111 4.111 12 C -0.128 4.128 13 C -0.143 4.143 14 C -0.123 4.123 15 C -0.105 4.105 16 C 0.174 3.826 17 H 0.059 0.941 18 C 0.150 3.850 19 N -0.737 5.737 20 C -0.249 4.249 21 H 0.067 0.933 22 C -0.060 4.060 23 N -0.937 5.937 24 Si 0.963 3.037 25 H -0.273 1.273 26 H -0.294 1.294 27 H -0.301 1.301 28 C -0.164 4.164 29 C -0.170 4.170 30 C -0.164 4.164 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.019 0.981 45 H 0.030 0.970 46 H 0.376 0.624 47 H 0.245 0.755 48 H 0.128 0.872 49 H 0.074 0.926 50 H 0.116 0.884 51 H 0.121 0.879 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.776 6.523 16.144 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.325 5.325 3 C 0.321 3.679 4 O -0.442 6.442 5 C -0.182 4.182 6 H 0.180 0.820 7 C -0.185 4.185 8 C -0.066 4.066 9 C -0.159 4.159 10 C -0.038 4.038 11 C -0.129 4.129 12 C -0.146 4.146 13 C -0.161 4.161 14 C -0.141 4.141 15 C -0.123 4.123 16 C 0.070 3.930 17 H 0.077 0.923 18 C 0.022 3.978 19 N -0.380 5.380 20 C -0.381 4.381 21 H 0.085 0.915 22 C -0.255 4.255 23 N -0.586 5.586 24 Si 0.793 3.207 25 H -0.197 1.197 26 H -0.221 1.221 27 H -0.228 1.228 28 C -0.183 4.183 29 C -0.207 4.207 30 C -0.202 4.202 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.208 0.792 47 H 0.054 0.946 48 H 0.146 0.854 49 H 0.092 0.908 50 H 0.135 0.865 51 H 0.139 0.861 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.210 6.378 16.024 17.753 hybrid contribution 0.317 -0.703 -1.874 2.027 sum -3.893 5.675 14.150 15.735 Atomic orbital electron populations 1.21833 0.78092 1.04397 1.01631 1.47623 1.07843 1.04595 1.72419 1.20200 0.87281 0.85376 0.75005 1.90700 1.15457 1.87431 1.50661 1.22399 1.04248 0.91601 0.99981 0.81975 1.23297 0.98756 1.02387 0.94042 1.20418 0.90353 0.94636 1.01185 1.21347 1.03320 0.90642 1.00635 1.19045 0.94167 0.96949 0.93616 1.20983 0.91744 1.00508 0.99629 1.21268 0.98245 0.99566 0.95536 1.21247 0.97948 0.99811 0.97109 1.21068 0.93759 0.99215 1.00067 1.21056 0.97769 0.97468 0.95990 1.20546 0.95841 0.83239 0.93372 0.92303 1.21030 0.97758 0.93093 0.85878 1.42432 1.78655 1.15785 1.01108 1.19482 1.35683 0.97972 0.84925 0.91462 1.25372 1.02742 0.96986 1.00362 1.69827 1.51608 1.09226 1.27946 0.85247 0.76505 0.77668 0.81257 1.19747 1.22110 1.22838 1.22470 0.99381 0.99773 0.96659 1.23001 0.98355 1.02379 0.96945 1.22983 1.03363 0.91385 1.02463 0.94434 0.89512 0.88499 0.84471 0.91282 0.89666 0.90689 0.91737 0.84597 0.83986 0.85648 0.88850 0.87714 0.96314 0.95220 0.79175 0.94558 0.85432 0.90775 0.86543 0.86124 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.11 9.39 127.77 1.20 3.31 16 2 N -0.59 -19.69 2.24 -822.59 -1.85 -21.54 16 3 C 0.53 19.31 6.65 87.65 0.58 19.90 16 4 O -0.56 -25.19 13.83 -3.05 -0.04 -25.23 16 5 C -0.16 -4.44 4.18 -11.54 -0.05 -4.49 16 6 H 0.16 3.09 7.82 -2.39 -0.02 3.07 16 7 C -0.15 -4.23 9.19 30.59 0.28 -3.95 16 8 C -0.07 -1.85 2.50 -52.93 -0.13 -1.98 16 9 C -0.10 -1.95 9.07 71.98 0.65 -1.30 16 10 C -0.04 -1.36 3.24 -19.87 -0.06 -1.43 16 11 C -0.11 -3.63 9.23 22.27 0.21 -3.42 16 12 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 13 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 14 C -0.12 -5.47 10.05 22.27 0.22 -5.25 16 15 C -0.10 -4.60 8.73 22.26 0.19 -4.41 16 16 C 0.17 6.23 2.42 44.99 0.11 6.34 16 17 H 0.06 2.58 6.65 -2.39 -0.02 2.56 16 18 C 0.15 6.27 5.32 86.38 0.46 6.73 16 19 N -0.74 -38.67 5.43 -343.42 -1.87 -40.53 16 20 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 23 N -0.94 -55.69 13.00 21.65 0.28 -55.41 16 24 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 28 C -0.16 -4.27 5.15 -10.79 -0.06 -4.33 16 29 C -0.17 -4.03 10.18 30.59 0.31 -3.72 16 30 C -0.16 -3.85 9.79 30.60 0.30 -3.55 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.81 6.43 -2.39 -0.02 1.79 16 33 H 0.10 1.81 6.68 -2.39 -0.02 1.79 16 34 H 0.14 2.85 8.05 -2.39 -0.02 2.83 16 35 H 0.07 2.71 6.14 -2.39 -0.01 2.70 16 36 H 0.08 1.21 7.90 -2.38 -0.02 1.19 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.25 8.08 -2.38 -0.02 1.23 16 39 H 0.14 3.60 7.68 -2.91 -0.02 3.58 16 40 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.10 5.21 5.92 -2.91 -0.02 5.19 16 44 H 0.02 0.82 7.47 -2.39 -0.02 0.80 16 45 H 0.03 1.19 7.84 -2.38 -0.02 1.17 16 46 H 0.38 21.43 7.07 -92.71 -0.66 20.78 16 47 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 48 H 0.13 2.76 6.59 -2.39 -0.02 2.74 16 49 H 0.07 2.07 8.05 -2.38 -0.02 2.05 16 50 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 52 H 0.08 2.18 7.66 -2.39 -0.02 2.16 16 Total: -1.00 -73.39 414.96 4.78 -68.60 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: 0.26 Total: 52.07 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 5.97 Total: -26.90 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -3.43 Total: -117.48 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.23 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -73.39 4.78 -68.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507018939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.695 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds