Wall clock time and date at job start Wed Apr 1 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47553 * 2 1 4 4 C 1.38255 * 120.00326 * 265.19261 * 3 2 1 5 5 C 1.38208 * 120.00190 * 180.20759 * 4 3 2 6 6 C 1.38259 * 120.00121 * 359.84894 * 5 4 3 7 7 C 1.38209 * 119.99837 * 359.95938 * 6 5 4 8 8 C 1.38222 * 119.99983 * 84.99325 * 3 2 1 9 9 C 1.50699 * 119.99663 * 0.02562 * 8 3 2 10 10 H 1.09004 * 115.56327 * 334.03080 * 9 8 3 11 11 C 1.53005 * 117.49656 * 188.34641 * 9 8 3 12 12 C 1.52994 * 117.50006 * 119.72452 * 9 8 3 13 13 H 1.09001 * 117.51625 * 0.02562 * 12 9 8 14 14 C 1.50702 * 117.50100 * 214.97692 * 12 9 8 15 15 O 1.21277 * 119.99775 * 359.97438 * 14 12 9 16 16 N 1.34775 * 120.00008 * 179.97438 * 14 12 9 17 17 C 1.47021 * 125.65141 * 359.97190 * 16 14 12 18 18 C 1.54321 * 107.27585 * 178.96545 * 17 16 14 19 19 C 1.55160 * 102.93797 * 337.80511 * 18 17 16 20 20 H 1.08996 * 111.00483 * 277.39075 * 19 18 17 21 21 C 1.53004 * 111.00130 * 153.57746 * 19 18 17 22 22 N 1.46494 * 109.47534 * 66.45425 * 21 19 18 23 23 C 1.36931 * 120.00458 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00103 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00429 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99535 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00484 * 179.97438 * 25 23 22 28 28 H 1.48490 * 109.47339 * 180.02562 * 27 25 23 29 29 H 1.48493 * 109.47239 * 300.00542 * 27 25 23 30 30 H 1.48504 * 109.46636 * 60.00101 * 27 25 23 31 31 C 1.47427 * 125.64982 * 180.02562 * 16 14 12 32 32 H 1.09007 * 109.46808 * 60.00163 * 1 2 3 33 33 H 1.08997 * 109.47190 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47324 * 300.00333 * 1 2 3 35 35 H 1.09005 * 109.47641 * 239.99890 * 2 1 3 36 36 H 1.09004 * 109.47305 * 119.99943 * 2 1 3 37 37 H 1.08005 * 120.00044 * 0.03209 * 4 3 2 38 38 H 1.08006 * 120.00105 * 179.83307 * 5 4 3 39 39 H 1.07997 * 120.00148 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.00240 * 180.02562 * 7 6 5 41 41 H 1.09001 * 117.49980 * 145.01997 * 11 9 8 42 42 H 1.09006 * 117.49500 * 359.97438 * 11 9 8 43 43 H 1.09001 * 109.88366 * 59.54425 * 17 16 14 44 44 H 1.09004 * 109.88263 * 298.38208 * 17 16 14 45 45 H 1.09001 * 110.71975 * 219.44697 * 18 17 16 46 46 H 1.08996 * 110.87269 * 96.23484 * 18 17 16 47 47 H 1.08998 * 109.46846 * 306.45091 * 21 19 18 48 48 H 1.09000 * 109.46887 * 186.45913 * 21 19 18 49 49 H 0.97000 * 119.99459 * 359.97438 * 22 21 19 50 50 H 0.97005 * 119.99717 * 179.97438 * 26 25 23 51 51 H 1.08999 * 110.37010 * 85.26228 * 31 16 14 52 52 H 1.09005 * 110.36200 * 322.93947 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1931 5 6 2.8224 3.3407 -1.1927 6 6 2.9594 4.0255 0.0006 7 6 2.6306 3.4087 1.1929 8 6 2.1643 2.1072 1.1925 9 6 1.8063 1.4345 2.4926 10 1 1.0714 0.6327 2.4205 11 6 1.7855 2.3005 3.7538 12 6 2.9119 1.2874 3.5398 13 1 3.8983 1.6774 3.2889 14 6 2.9016 0.0450 4.3928 15 8 2.0378 -0.7915 4.2352 16 7 3.8524 -0.1364 5.3306 17 6 4.9532 0.7924 5.6257 18 6 5.7688 0.1826 6.7852 19 6 4.7533 -0.7799 7.4558 20 1 4.1012 -0.2422 8.1440 21 6 5.4731 -1.9261 8.1695 22 7 6.2360 -1.3942 9.3014 23 6 6.9655 -2.2401 10.0934 24 1 6.9788 -3.2994 9.8834 25 6 7.6888 -1.7360 11.1656 26 7 7.6729 -0.4450 11.4213 27 14 8.6833 -2.8901 12.2465 28 1 9.3583 -2.1095 13.3143 29 1 7.7787 -3.8929 12.8638 30 1 9.7033 -3.5854 11.4209 31 6 3.9615 -1.2996 6.2298 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.2509 1.5041 -2.1252 38 1 3.0789 3.8228 -2.1245 39 1 3.3230 5.0424 0.0009 40 1 2.7372 3.9437 2.1250 41 1 1.0371 2.0685 4.5114 42 1 2.0313 3.3567 3.6431 43 1 4.5513 1.7606 5.9242 44 1 5.5873 0.9069 4.7466 45 1 6.0848 0.9575 7.4837 46 1 6.6300 -0.3680 6.4067 47 1 6.1518 -2.4184 7.4731 48 1 4.7394 -2.6461 8.5320 49 1 6.2243 -0.4427 9.4897 50 1 8.1781 -0.0927 12.1708 51 1 4.5059 -2.1074 5.7408 52 1 2.9709 -1.6382 6.5339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567138247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:17 Heat of formation + Delta-G solvation = 15.202744 kcal Electronic energy + Delta-G solvation = -28984.335137 eV Core-core repulsion = 25142.029560 eV Total energy + Delta-G solvation = -3842.305577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.70155 -39.73628 -37.97468 -36.34509 -34.69324 -34.48510 -32.25237 -30.91615 -30.18871 -29.62920 -29.10223 -26.10893 -24.52011 -24.13096 -23.90949 -22.55173 -22.29454 -21.35106 -20.42839 -20.02699 -19.00148 -17.69466 -17.08242 -16.75755 -16.23790 -16.01324 -15.41668 -15.29803 -14.77214 -14.45484 -14.29172 -14.15231 -13.80543 -13.64744 -13.50325 -13.45513 -13.31648 -13.07537 -12.67873 -12.56136 -12.45561 -12.37595 -12.11699 -12.04458 -11.69437 -11.63341 -11.21478 -11.18016 -11.11802 -10.85698 -10.84085 -10.70465 -10.66076 -10.49795 -10.39560 -10.09153 -9.88989 -9.70354 -9.08162 -8.89194 -8.77452 -8.62704 -6.94778 -5.78709 -3.07347 0.98229 1.08536 2.41030 2.88514 3.33467 3.43330 3.47773 3.48670 3.77708 4.15989 4.39548 4.48603 4.50973 4.55941 4.57576 4.70586 4.71183 4.75897 4.88310 4.90255 4.93241 5.10869 5.11395 5.20556 5.22337 5.29733 5.31494 5.37993 5.47802 5.55310 5.58455 5.62247 5.65046 5.71085 5.71201 5.77561 5.87194 5.88197 5.99956 6.02698 6.03257 6.11194 6.20588 6.21225 6.23925 6.37958 6.39873 6.44192 6.69999 6.70267 6.82864 7.50700 7.68130 8.11812 8.40250 9.51611 10.08442 10.43492 11.44089 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.001801 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.346535 B =15539.980249 C =16105.992670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.086 4.086 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.172 4.172 13 H 0.124 0.876 14 C 0.557 3.443 15 O -0.545 6.545 16 N -0.611 5.611 17 C 0.100 3.900 18 C -0.121 4.121 19 C -0.105 4.105 20 H 0.084 0.916 21 C 0.164 3.836 22 N -0.731 5.731 23 C -0.240 4.240 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.908 3.092 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.286 1.286 31 C 0.113 3.887 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.070 0.930 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.375 9.670 -25.873 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.104 4.104 10 H 0.147 0.853 11 C -0.181 4.181 12 C -0.193 4.193 13 H 0.142 0.858 14 C 0.346 3.654 15 O -0.423 6.423 16 N -0.344 5.344 17 C -0.023 4.023 18 C -0.159 4.159 19 C -0.125 4.125 20 H 0.102 0.898 21 C 0.036 3.964 22 N -0.375 5.375 23 C -0.371 4.371 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.583 5.583 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.213 1.213 31 C -0.010 4.010 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.806 9.082 -25.935 30.316 hybrid contribution 0.836 -0.146 0.730 1.120 sum -11.969 8.936 -25.205 29.298 Atomic orbital electron populations 1.21740 0.94563 1.01941 1.02071 1.20606 0.96389 0.92529 1.03305 1.19739 0.98537 0.96219 0.92367 1.21029 0.99936 0.95197 0.97384 1.21135 0.99849 0.94831 0.98096 1.21098 1.00564 0.99956 0.92479 1.21062 0.99455 0.94521 0.98413 1.18970 0.99565 0.93760 0.92741 1.21140 1.00358 1.01784 0.87162 0.85256 1.23138 0.99151 0.96411 0.99426 1.22308 0.96991 0.97771 1.02194 0.85826 1.19203 0.80226 0.86700 0.79312 1.90688 1.37125 1.45366 1.69106 1.48434 1.27755 1.22645 1.35596 1.22153 0.88191 0.93178 0.98793 1.22641 0.97725 0.99639 0.95862 1.22566 0.96751 0.97839 0.95310 0.89753 1.20547 0.93218 0.92841 0.89783 1.42287 1.56376 1.07781 1.31038 1.19183 1.20958 0.90665 1.06306 0.91212 1.24739 1.01060 0.95975 0.99211 1.69648 1.46136 1.10965 1.31511 0.86251 0.79975 0.79709 0.80155 1.21698 1.21271 1.21270 1.22277 1.01029 0.88069 0.89579 0.92753 0.92222 0.92333 0.91136 0.90220 0.86094 0.86173 0.86078 0.85827 0.87668 0.87374 0.91334 0.91621 0.89438 0.90178 0.95985 0.96005 0.78233 0.93470 0.91164 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.74 37.16 0.36 -0.76 16 2 C -0.09 -0.77 5.38 -27.88 -0.15 -0.92 16 3 C -0.07 -0.62 5.13 -104.62 -0.54 -1.16 16 4 C -0.12 -0.94 9.68 -39.59 -0.38 -1.32 16 5 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 6 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 7 C -0.12 -0.95 9.30 -39.59 -0.37 -1.32 16 8 C -0.05 -0.46 5.61 -104.62 -0.59 -1.05 16 9 C -0.09 -0.84 4.65 -91.77 -0.43 -1.27 16 10 H 0.13 1.43 5.48 -51.93 -0.28 1.14 16 11 C -0.14 -1.24 9.56 -26.73 -0.26 -1.49 16 12 C -0.17 -1.77 5.17 -91.77 -0.47 -2.24 16 13 H 0.12 1.13 7.73 -51.93 -0.40 0.73 16 14 C 0.56 7.63 7.63 -10.99 -0.08 7.55 16 15 O -0.54 -9.18 16.51 5.56 0.09 -9.09 16 16 N -0.61 -8.12 3.33 -170.51 -0.57 -8.69 16 17 C 0.10 1.13 6.28 -3.07 -0.02 1.11 16 18 C -0.12 -1.66 6.13 -24.90 -0.15 -1.82 16 19 C -0.11 -1.63 3.11 -88.46 -0.27 -1.90 16 20 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 21 C 0.16 3.18 5.70 -4.04 -0.02 3.16 16 22 N -0.73 -17.94 5.45 -59.91 -0.33 -18.26 16 23 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 27 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 31 C 0.11 1.62 6.38 -2.52 -0.02 1.60 16 32 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 7.17 -51.93 -0.37 0.11 16 35 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.08 0.79 6.95 -51.93 -0.36 0.43 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.82 6.02 -52.49 -0.32 0.50 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.11 0.71 6.18 -51.93 -0.32 0.39 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 45 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 47 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.38 9.81 7.53 -40.82 -0.31 9.50 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 52 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 LS Contribution 416.94 15.07 6.28 6.28 Total: -1.00 -32.14 416.94 -11.90 -44.04 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.65 Total: 7.28 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -4.43 Total: -11.72 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.17 Total: -54.00 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.14 -11.90 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567138247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.243 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds