Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47488 * 2 1 4 4 C 1.38250 * 119.99501 * 265.01983 * 3 2 1 5 5 C 1.38223 * 119.99572 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99989 * 359.95279 * 5 4 3 7 7 C 1.38216 * 120.00322 * 359.79553 * 6 5 4 8 8 C 1.38206 * 120.00061 * 84.99537 * 3 2 1 9 9 C 1.50702 * 120.00050 * 0.02562 * 8 3 2 10 10 H 1.08996 * 115.56196 * 334.30916 * 9 8 3 11 11 C 1.53000 * 117.50011 * 188.61930 * 9 8 3 12 12 C 1.52994 * 59.99986 * 252.51050 * 11 9 8 13 13 H 1.09004 * 117.50296 * 107.51587 * 12 11 9 14 14 C 1.50702 * 117.49959 * 252.50507 * 12 11 9 15 15 O 1.21287 * 119.99685 * 68.61342 * 14 12 11 16 16 N 1.34770 * 120.00357 * 248.61013 * 14 12 11 17 17 C 1.47017 * 125.64976 * 359.95956 * 16 14 12 18 18 C 1.54326 * 107.26946 * 181.09269 * 17 16 14 19 19 C 1.55155 * 102.94510 * 22.19391 * 18 17 16 20 20 H 1.09001 * 111.03742 * 82.58147 * 19 18 17 21 21 C 1.53002 * 111.00488 * 206.42067 * 19 18 17 22 22 N 1.46494 * 109.47008 * 287.19956 * 21 19 18 23 23 C 1.36945 * 119.99612 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00077 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99637 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99539 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 120.00216 * 359.97438 * 25 23 22 28 28 H 1.48501 * 109.46712 * 90.00052 * 27 25 23 29 29 H 1.48499 * 109.46916 * 209.99467 * 27 25 23 30 30 H 1.48492 * 109.46909 * 330.00070 * 27 25 23 31 31 C 1.47431 * 125.64640 * 179.97438 * 16 14 12 32 32 H 1.08998 * 109.47525 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47018 * 300.00162 * 1 2 3 34 34 H 1.09006 * 109.47033 * 59.99837 * 1 2 3 35 35 H 1.09003 * 109.47123 * 239.99097 * 2 1 3 36 36 H 1.09006 * 109.46508 * 120.00169 * 2 1 3 37 37 H 1.07994 * 120.00822 * 359.97438 * 4 3 2 38 38 H 1.08001 * 119.99945 * 179.97438 * 5 4 3 39 39 H 1.08003 * 119.99868 * 180.02562 * 6 5 4 40 40 H 1.07996 * 120.00069 * 180.25270 * 7 6 5 41 41 H 1.08996 * 117.50207 * 145.01575 * 11 9 8 42 42 H 1.09007 * 117.51644 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.88111 * 300.50961 * 17 16 14 44 44 H 1.09001 * 109.88370 * 61.52506 * 17 16 14 45 45 H 1.09000 * 110.72125 * 263.82789 * 18 17 16 46 46 H 1.09001 * 110.71733 * 140.55933 * 18 17 16 47 47 H 1.08995 * 109.46742 * 167.19029 * 21 19 18 48 48 H 1.09002 * 109.46787 * 47.19750 * 21 19 18 49 49 H 0.96995 * 120.00290 * 0.27040 * 22 21 19 50 50 H 0.97005 * 119.99727 * 180.02562 * 26 25 23 51 51 H 1.09002 * 110.36517 * 37.00249 * 31 16 14 52 52 H 1.09002 * 110.36529 * 274.67680 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0377 -1.1928 5 6 2.8222 3.3407 -1.1928 6 6 2.9542 4.0272 -0.0001 7 6 2.6209 3.4121 1.1920 8 6 2.1644 2.1071 1.1923 9 6 1.8064 1.4345 2.4925 10 1 1.0750 0.6296 2.4199 11 6 1.7795 2.3018 3.7527 12 6 2.9104 1.2932 3.5423 13 1 3.8959 1.6867 3.2929 14 6 2.9036 0.0518 4.3967 15 8 2.0437 -0.7887 4.2381 16 7 3.8530 -0.1245 5.3368 17 6 4.9493 0.8092 5.6331 18 6 5.7965 0.1787 6.7585 19 6 5.4591 -1.3313 6.6431 20 1 6.0596 -1.8084 5.8686 21 6 5.6416 -2.0383 7.9877 22 7 7.0710 -2.1681 8.2810 23 6 7.4800 -2.7734 9.4394 24 1 6.7488 -3.1546 10.1368 25 6 8.8344 -2.8969 9.7171 26 7 9.2275 -3.4791 10.8302 27 14 10.0992 -2.2382 8.5104 28 1 10.4131 -0.8257 8.8444 29 1 11.3371 -3.0540 8.5963 30 1 9.5528 -2.3111 7.1316 31 6 3.9643 -1.2858 6.2383 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5140 -0.8899 36 1 1.8932 -0.5139 0.8900 37 1 2.2578 1.5015 -2.1245 38 1 3.0791 3.8226 -2.1246 39 1 3.3143 5.0454 -0.0001 40 1 2.7202 3.9498 2.1233 41 1 1.0304 2.0676 4.5090 42 1 2.0211 3.3589 3.6417 43 1 5.5630 0.9543 4.7441 44 1 4.5430 1.7653 5.9631 45 1 5.4961 0.5678 7.7314 46 1 6.8586 0.3510 6.5843 47 1 5.1886 -3.0286 7.9419 48 1 5.1611 -1.4549 8.7731 49 1 7.7277 -1.8223 7.6565 50 1 10.1740 -3.5651 11.0244 51 1 3.6850 -2.2003 5.7151 52 1 3.3368 -1.1444 7.1183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567138248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = 19.660732 kcal Electronic energy + Delta-G solvation = -29084.610658 eV Core-core repulsion = 25242.498394 eV Total energy + Delta-G solvation = -3842.112264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.76231 -39.80698 -38.08044 -36.41217 -34.88619 -34.51743 -32.29834 -30.99401 -30.54902 -29.66546 -29.31666 -26.35544 -24.57639 -24.17968 -23.95069 -22.64576 -21.95244 -21.38876 -20.47676 -20.26577 -19.08277 -17.85071 -17.53935 -16.80842 -16.26914 -16.07974 -15.42115 -15.31262 -14.99331 -14.54209 -14.20702 -14.16109 -13.82795 -13.80036 -13.61739 -13.53621 -13.40452 -13.18134 -12.77862 -12.63054 -12.51564 -12.44462 -12.15723 -12.08690 -11.81608 -11.72877 -11.60439 -11.21795 -11.18056 -10.99693 -10.88575 -10.74404 -10.72012 -10.62723 -10.53667 -10.14830 -9.96206 -9.61661 -9.11768 -8.92869 -8.81727 -8.71513 -7.26565 -5.79149 -3.15150 0.94463 1.04989 2.34068 2.80099 3.28640 3.34420 3.36372 3.42843 3.72024 4.09431 4.33027 4.43833 4.46479 4.51084 4.56230 4.59647 4.63012 4.66895 4.80943 4.83761 4.86727 4.94311 5.08079 5.16480 5.16848 5.19093 5.26770 5.31953 5.35297 5.48923 5.53216 5.55159 5.56845 5.67161 5.68552 5.73040 5.73375 5.78643 5.83525 5.86219 5.89938 5.97119 6.07153 6.15615 6.17736 6.19273 6.29187 6.36225 6.60213 6.66411 6.69579 7.41566 7.96632 8.04383 8.39633 9.18337 9.90439 10.09981 11.39179 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018110 B = 0.001983 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.699781 B =14114.945231 C =14630.853547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.172 4.172 13 H 0.124 0.876 14 C 0.557 3.443 15 O -0.543 6.543 16 N -0.612 5.612 17 C 0.100 3.900 18 C -0.124 4.124 19 C -0.110 4.110 20 H 0.084 0.916 21 C 0.169 3.831 22 N -0.754 5.754 23 C -0.244 4.244 24 H 0.090 0.910 25 C 0.004 3.996 26 N -0.933 5.933 27 Si 0.885 3.115 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 C 0.114 3.886 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.031 0.969 48 H 0.031 0.969 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 16.855 -24.298 33.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.051 4.051 9 C -0.103 4.103 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.193 4.193 13 H 0.142 0.858 14 C 0.346 3.654 15 O -0.420 6.420 16 N -0.345 5.345 17 C -0.023 4.023 18 C -0.162 4.162 19 C -0.130 4.130 20 H 0.102 0.898 21 C 0.041 3.959 22 N -0.400 5.400 23 C -0.374 4.374 24 H 0.108 0.892 25 C -0.192 4.192 26 N -0.581 5.581 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.204 1.204 31 C -0.009 4.009 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.193 0.807 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.960 16.286 -24.206 33.746 hybrid contribution 1.318 0.543 -0.762 1.616 sum -15.642 16.829 -24.968 33.930 Atomic orbital electron populations 1.21740 0.94537 1.01967 1.02060 1.20609 0.96404 0.92508 1.03339 1.19737 0.98460 0.96253 0.92362 1.21038 0.99870 0.95189 0.97413 1.21142 0.99813 0.94810 0.98109 1.21098 1.00556 0.99970 0.92494 1.21055 0.99553 0.94472 0.98392 1.18963 0.99684 0.93738 0.92733 1.21138 1.00309 1.01747 0.87142 0.85226 1.23133 0.99051 0.96435 0.99516 1.22305 0.96993 0.97798 1.02245 0.85840 1.19209 0.80293 0.86781 0.79128 1.90699 1.37170 1.44931 1.69229 1.48418 1.28090 1.22560 1.35479 1.22126 0.88304 0.92964 0.98875 1.22702 1.00093 0.95179 0.98262 1.22633 0.94615 0.95845 0.99902 0.89754 1.20525 0.86808 0.97102 0.91438 1.42657 1.01077 1.72322 1.23939 1.19055 0.92410 1.30140 0.95822 0.89174 1.24686 0.96671 1.00708 0.97149 1.69706 1.15025 1.48620 1.24783 0.86539 0.81992 0.78722 0.81222 1.21063 1.21723 1.20361 1.22259 0.96734 0.88810 0.93058 0.92193 0.92353 0.92739 0.91103 0.90228 0.86059 0.86149 0.86082 0.85862 0.87675 0.87385 0.91589 0.91275 0.89847 0.89884 0.95131 0.95063 0.80671 0.93041 0.90265 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.74 37.16 0.36 -0.73 16 2 C -0.09 -0.76 5.38 -27.88 -0.15 -0.91 16 3 C -0.07 -0.60 5.13 -104.63 -0.54 -1.14 16 4 C -0.12 -0.92 9.68 -39.58 -0.38 -1.30 16 5 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 6 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 7 C -0.12 -0.91 9.30 -39.58 -0.37 -1.28 16 8 C -0.05 -0.46 5.61 -104.62 -0.59 -1.04 16 9 C -0.09 -0.79 4.66 -91.77 -0.43 -1.22 16 10 H 0.13 1.37 5.47 -51.93 -0.28 1.09 16 11 C -0.14 -1.14 9.56 -26.73 -0.26 -1.39 16 12 C -0.17 -1.67 5.17 -91.78 -0.47 -2.14 16 13 H 0.12 1.06 7.67 -51.93 -0.40 0.67 16 14 C 0.56 7.26 7.63 -10.99 -0.08 7.18 16 15 O -0.54 -8.83 16.51 5.55 0.09 -8.74 16 16 N -0.61 -7.61 3.33 -170.50 -0.57 -8.18 16 17 C 0.10 1.03 6.31 -3.07 -0.02 1.01 16 18 C -0.12 -1.53 6.37 -24.90 -0.16 -1.69 16 19 C -0.11 -1.58 3.05 -88.46 -0.27 -1.85 16 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 21 C 0.17 3.09 5.71 -4.04 -0.02 3.07 16 22 N -0.75 -17.33 5.35 -59.91 -0.32 -17.65 16 23 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 24 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 25 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 26 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 27 Si 0.88 21.73 27.73 -169.99 -4.71 17.01 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 31 C 0.11 1.53 6.38 -2.51 -0.02 1.51 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 7.17 -51.93 -0.37 0.09 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 36 H 0.08 0.78 6.94 -51.93 -0.36 0.42 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.12 0.76 6.02 -52.49 -0.32 0.44 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.63 6.17 -51.93 -0.32 0.31 16 43 H 0.07 0.60 7.97 -51.93 -0.41 0.19 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 1.05 7.91 -51.93 -0.41 0.63 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.58 7.97 -51.93 -0.41 0.16 16 49 H 0.36 8.03 5.53 -40.82 -0.23 7.80 16 50 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 51 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 52 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 413.89 15.07 6.24 6.24 Total: -1.00 -33.29 413.89 -11.53 -44.82 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.59 Total: 6.34 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -4.44 Total: -11.46 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.11 Total: -54.21 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.29 -11.53 -44.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567138248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.479 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds