Wall clock time and date at job start Wed Apr 1 2020 03:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47464 * 2 1 4 4 C 1.38263 * 120.00117 * 264.99954 * 3 2 1 5 5 C 1.38205 * 119.99844 * 179.97438 * 4 3 2 6 6 C 1.38260 * 120.00493 * 0.28407 * 5 4 3 7 7 C 1.38215 * 119.99548 * 359.52411 * 6 5 4 8 8 C 1.38221 * 119.99914 * 84.97516 * 3 2 1 9 9 C 1.50699 * 120.00033 * 0.02562 * 8 3 2 10 10 H 1.09003 * 115.54671 * 334.41522 * 9 8 3 11 11 C 1.52992 * 117.49758 * 188.74497 * 9 8 3 12 12 C 1.53001 * 117.49701 * 120.08416 * 9 8 3 13 13 H 1.08995 * 117.49694 * 0.02562 * 12 9 8 14 14 C 1.50703 * 117.49661 * 215.00212 * 12 9 8 15 15 O 1.21278 * 120.00114 * 0.02562 * 14 12 9 16 16 N 1.34779 * 119.99741 * 180.02562 * 14 12 9 17 17 C 1.46500 * 119.99838 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.47135 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47135 * 180.02562 * 18 17 16 20 20 C 1.36933 * 119.99806 * 89.99980 * 19 18 17 21 21 H 1.08000 * 119.99820 * 216.88815 * 20 19 18 22 22 C 1.38810 * 120.00367 * 36.89387 * 20 19 18 23 23 N 1.31618 * 119.99926 * 21.17518 * 22 20 19 24 24 Si 1.86801 * 120.00180 * 201.18305 * 22 20 19 25 25 H 1.48494 * 109.47449 * 59.99590 * 24 22 20 26 26 H 1.48507 * 109.46951 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46844 * 299.99255 * 24 22 20 28 28 C 1.46501 * 120.00185 * 269.99821 * 19 18 17 29 29 C 1.52998 * 117.50144 * 194.47529 * 28 19 18 30 30 C 1.52999 * 117.49907 * 125.81482 * 28 19 18 31 31 H 1.08996 * 109.47094 * 300.00274 * 1 2 3 32 32 H 1.09004 * 109.46676 * 59.99994 * 1 2 3 33 33 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.47408 * 240.00124 * 2 1 3 35 35 H 1.09006 * 109.47136 * 120.00223 * 2 1 3 36 36 H 1.07996 * 119.99636 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99819 * 179.97438 * 5 4 3 38 38 H 1.07997 * 120.00424 * 179.72291 * 6 5 4 39 39 H 1.08003 * 119.99972 * 180.23303 * 7 6 5 40 40 H 1.09002 * 117.50074 * 359.97438 * 11 9 8 41 41 H 1.09009 * 117.49814 * 145.01971 * 11 9 8 42 42 H 0.97001 * 120.00133 * 0.02562 * 16 14 12 43 43 H 1.09003 * 109.47044 * 300.00196 * 17 16 14 44 44 H 1.09004 * 109.47023 * 59.99924 * 17 16 14 45 45 H 1.09003 * 109.47241 * 299.99986 * 18 17 16 46 46 H 1.09004 * 109.47301 * 60.00004 * 18 17 16 47 47 H 0.97006 * 120.00504 * 174.80804 * 23 22 20 48 48 H 1.08996 * 115.54798 * 340.14905 * 28 19 18 49 49 H 1.09000 * 117.49380 * 359.97438 * 29 28 19 50 50 H 1.08997 * 117.50282 * 145.02011 * 29 28 19 51 51 H 1.09001 * 117.50236 * 214.98253 * 30 28 19 52 52 H 1.09005 * 117.49829 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8215 3.3409 -1.1928 6 6 2.9587 4.0257 0.0004 7 6 2.6262 3.4103 1.1925 8 6 2.1640 2.1072 1.1924 9 6 1.8055 1.4348 2.4926 10 1 1.0755 0.6286 2.4192 11 6 1.7753 2.3028 3.7520 12 6 2.9088 1.2954 3.5434 13 1 3.8936 1.6905 3.2945 14 6 2.9029 0.0541 4.3980 15 8 2.0449 -0.7880 4.2382 16 7 3.8512 -0.1202 5.3397 17 6 3.8452 -1.3266 6.1708 18 6 5.0181 -1.2758 7.1520 19 7 5.0124 -2.4825 7.9826 20 6 5.6978 -3.5963 7.5768 21 1 5.2914 -4.5790 7.7652 22 6 6.9152 -3.4624 6.9233 23 7 7.6118 -2.3529 7.0504 24 14 7.5646 -4.8567 5.8632 25 1 6.5997 -5.1383 4.7702 26 1 8.8731 -4.4665 5.2794 27 1 7.7370 -6.0733 6.6970 28 6 4.2735 -2.4976 9.2476 29 6 4.5702 -3.6362 10.2256 30 6 3.2486 -3.6148 9.4537 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.2585 1.5013 -2.1245 37 1 3.0788 3.8227 -2.1245 38 1 3.3226 5.0425 0.0008 39 1 2.7297 3.9464 2.1243 40 1 2.0151 3.3603 3.6403 41 1 1.0256 2.0676 4.5076 42 1 4.5372 0.5536 5.4677 43 1 2.9091 -1.3802 6.7266 44 1 3.9410 -2.2065 5.5347 45 1 5.9544 -1.2219 6.5965 46 1 4.9218 -0.3959 7.7881 47 1 8.4957 -2.2873 6.6562 48 1 4.0431 -1.5193 9.6691 49 1 5.3150 -4.3742 9.9276 50 1 4.5348 -3.4070 11.2906 51 1 2.3441 -3.3714 10.0112 52 1 3.1237 -4.3382 8.6479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567449109.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:33 Heat of formation + Delta-G solvation = 48.590244 kcal Electronic energy + Delta-G solvation = -29217.804583 eV Core-core repulsion = 25376.946797 eV Total energy + Delta-G solvation = -3840.857786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.85 seconds Orbital eigenvalues (eV) -40.42330 -39.18053 -37.20545 -36.37884 -34.66757 -34.35099 -33.20485 -30.96472 -30.64290 -29.50291 -27.86114 -24.98116 -24.26393 -23.96533 -23.51412 -21.43355 -21.37175 -21.21521 -20.36519 -19.96376 -19.65052 -17.52115 -16.71141 -16.21979 -15.78225 -15.51699 -15.42233 -15.12969 -14.91436 -14.40286 -14.26588 -14.02122 -13.97335 -13.75208 -13.60207 -13.36099 -12.82218 -12.58563 -12.55691 -12.33732 -12.00823 -11.95978 -11.89752 -11.55037 -11.46701 -11.05665 -11.02559 -10.96976 -10.85112 -10.67850 -10.60010 -10.54256 -10.49263 -10.19665 -10.02870 -9.65491 -9.60595 -9.28543 -8.95547 -8.63675 -8.56584 -8.46553 -6.57659 -5.91878 -3.47535 1.11431 1.20662 2.74689 3.30935 3.37390 3.38148 3.41630 3.57979 3.96622 4.36374 4.45070 4.58542 4.63947 4.72139 4.80294 4.82973 4.92859 5.01786 5.02404 5.16754 5.24947 5.26843 5.30090 5.34028 5.35722 5.43401 5.53705 5.72206 5.80146 5.83685 5.85724 5.87955 5.92279 5.99997 6.02323 6.09862 6.14121 6.17315 6.31794 6.32584 6.36185 6.48213 6.50779 6.53898 6.59097 6.82354 6.86505 6.92713 7.03866 7.16486 7.48524 7.74978 7.93230 8.41243 8.58975 9.06253 9.68424 10.24175 11.09377 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.002361 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.610910 B =11854.522655 C =12490.831415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.088 4.088 10 H 0.129 0.871 11 C -0.146 4.146 12 C -0.174 4.174 13 H 0.123 0.877 14 C 0.536 3.464 15 O -0.547 6.547 16 N -0.715 5.715 17 C 0.099 3.901 18 C 0.139 3.861 19 N -0.545 5.545 20 C -0.263 4.263 21 H 0.064 0.936 22 C 0.017 3.983 23 N -0.888 5.888 24 Si 0.900 3.100 25 H -0.280 1.280 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.126 3.874 29 C -0.196 4.196 30 C -0.227 4.227 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.398 0.602 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.031 0.969 47 H 0.258 0.742 48 H 0.088 0.912 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 13.626 -12.186 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.147 0.853 11 C -0.183 4.183 12 C -0.195 4.195 13 H 0.141 0.859 14 C 0.321 3.679 15 O -0.426 6.426 16 N -0.364 5.364 17 C -0.026 4.026 18 C 0.011 3.989 19 N -0.261 5.261 20 C -0.393 4.393 21 H 0.082 0.918 22 C -0.184 4.184 23 N -0.530 5.530 24 Si 0.729 3.271 25 H -0.206 1.206 26 H -0.215 1.215 27 H -0.206 1.206 28 C 0.017 3.983 29 C -0.234 4.234 30 C -0.268 4.268 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.232 0.768 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.501 13.072 -12.408 20.860 hybrid contribution 0.867 -0.439 -0.444 1.069 sum -9.634 12.633 -12.852 20.435 Atomic orbital electron populations 1.21735 0.94608 1.01929 1.01969 1.20615 0.96350 0.92523 1.03447 1.19752 0.98450 0.96242 0.92371 1.21024 0.99982 0.95157 0.97390 1.21116 1.00067 0.94846 0.98045 1.21082 1.00671 0.99929 0.92512 1.21057 0.99558 0.94541 0.98364 1.19006 0.99314 0.93699 0.92856 1.21118 1.00714 1.01747 0.87038 0.85289 1.23122 0.99414 0.96306 0.99489 1.22407 0.96741 0.98155 1.02231 0.85878 1.19534 0.81613 0.86499 0.80221 1.90674 1.37871 1.44638 1.69373 1.46018 1.30097 1.24044 1.36287 1.22347 1.01121 0.85681 0.93415 1.21100 0.97724 0.87787 0.92240 1.43207 1.54989 1.12269 1.15674 1.18917 0.99754 0.86425 1.34182 0.91836 1.25197 0.95485 0.97020 1.00659 1.69861 1.10665 1.26927 1.45555 0.86403 0.77860 0.81875 0.80929 1.20640 1.21461 1.20551 1.21136 0.96801 0.91461 0.88943 1.23086 0.99342 1.05235 0.95781 1.23382 0.92588 1.07156 1.03677 0.92335 0.92844 0.92223 0.91160 0.90042 0.86138 0.86254 0.86166 0.85837 0.87585 0.87767 0.76834 0.93008 0.91706 0.87851 0.95058 0.93159 0.89397 0.88284 0.90778 0.90882 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.74 37.16 0.36 -1.00 16 2 C -0.09 -0.96 5.38 -27.88 -0.15 -1.11 16 3 C -0.07 -0.74 5.13 -104.62 -0.54 -1.27 16 4 C -0.12 -1.13 9.68 -39.58 -0.38 -1.51 16 5 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 7 C -0.12 -1.13 9.30 -39.58 -0.37 -1.50 16 8 C -0.05 -0.53 5.61 -104.62 -0.59 -1.12 16 9 C -0.09 -1.03 4.66 -91.78 -0.43 -1.45 16 10 H 0.13 1.70 5.46 -51.93 -0.28 1.41 16 11 C -0.15 -1.48 9.57 -26.70 -0.26 -1.73 16 12 C -0.17 -2.14 5.82 -91.73 -0.53 -2.67 16 13 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.54 8.85 7.61 -10.98 -0.08 8.77 16 15 O -0.55 -11.06 16.26 5.56 0.09 -10.97 16 16 N -0.71 -11.81 5.56 -60.29 -0.33 -12.15 16 17 C 0.10 2.00 6.00 -4.04 -0.02 1.98 16 18 C 0.14 3.02 5.45 -4.04 -0.02 3.00 16 19 N -0.55 -13.07 2.79 -165.67 -0.46 -13.53 16 20 C -0.26 -6.92 8.07 -15.06 -0.12 -7.05 16 21 H 0.06 1.70 7.16 -52.49 -0.38 1.32 16 22 C 0.02 0.45 4.97 -17.43 -0.09 0.37 16 23 N -0.89 -24.25 11.40 55.49 0.63 -23.62 16 24 Si 0.90 21.21 29.61 -169.99 -5.03 16.18 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.13 2.66 6.61 -67.93 -0.45 2.21 16 29 C -0.20 -3.89 9.81 -26.69 -0.26 -4.16 16 30 C -0.23 -4.39 10.08 -26.69 -0.27 -4.66 16 31 H 0.06 0.58 7.17 -51.93 -0.37 0.21 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.08 1.01 6.94 -51.93 -0.36 0.64 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.98 6.03 -52.48 -0.32 0.66 16 40 H 0.11 0.83 6.18 -51.93 -0.32 0.51 16 41 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.40 5.55 8.47 -40.82 -0.35 5.21 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.10 2.52 5.45 -51.93 -0.28 2.24 16 46 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 47 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 48 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 49 H 0.10 2.18 6.95 -51.93 -0.36 1.82 16 50 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 52 H 0.09 1.78 7.98 -51.93 -0.41 1.37 16 LS Contribution 420.13 15.07 6.33 6.33 Total: -1.00 -30.18 420.13 -12.25 -42.43 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -8.48 Total: 11.22 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.99 Total: -15.89 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.16 Total: -49.29 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -30.18 -12.25 -42.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567449109.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.018 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds