Wall clock time and date at job start Wed Apr 1 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 119.99794 * 2 1 4 4 C 1.38220 * 119.99870 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99878 * 359.96044 * 4 3 2 6 6 C 1.38217 * 120.00310 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99950 * 179.97438 * 6 5 4 8 8 H 1.08995 * 115.54696 * 154.41867 * 7 6 5 9 9 C 1.52995 * 117.50100 * 8.74364 * 7 6 5 10 10 C 1.52996 * 117.49577 * 300.08526 * 7 6 5 11 11 H 1.09003 * 117.50213 * 359.97438 * 10 7 6 12 12 C 1.50700 * 117.49887 * 214.98133 * 10 7 6 13 13 O 1.21284 * 120.00014 * 359.97438 * 12 10 7 14 14 N 1.34781 * 120.00525 * 179.97438 * 12 10 7 15 15 C 1.47024 * 125.64278 * 0.02567 * 14 12 10 16 16 C 1.54324 * 107.26839 * 178.89847 * 15 14 12 17 17 C 1.55150 * 102.94545 * 337.81256 * 16 15 14 18 18 H 1.09003 * 111.00160 * 277.42197 * 17 16 15 19 19 C 1.53003 * 111.00654 * 153.61070 * 17 16 15 20 20 N 1.46495 * 109.47009 * 66.45488 * 19 17 16 21 21 C 1.46504 * 119.99932 * 270.00103 * 20 19 17 22 22 C 1.36935 * 120.00587 * 89.99861 * 20 19 17 23 23 H 1.07999 * 119.99475 * 20.36795 * 22 20 19 24 24 C 1.38809 * 120.00282 * 200.36437 * 22 20 19 25 25 N 1.31617 * 120.00137 * 15.00988 * 24 22 20 26 26 Si 1.86799 * 119.99957 * 195.00170 * 24 22 20 27 27 H 1.48502 * 109.47146 * 85.00730 * 26 24 22 28 28 H 1.48504 * 109.47067 * 205.00372 * 26 24 22 29 29 H 1.48498 * 109.47173 * 325.00455 * 26 24 22 30 30 C 1.47419 * 125.64998 * 179.71580 * 14 12 10 31 31 C 1.38217 * 120.00318 * 179.72690 * 2 1 3 32 32 H 1.09002 * 109.47030 * 90.00566 * 1 2 3 33 33 H 1.09001 * 109.47261 * 330.00293 * 1 2 3 34 34 H 1.09003 * 109.46855 * 210.00105 * 1 2 3 35 35 H 1.08002 * 120.00224 * 359.97438 * 3 2 1 36 36 H 1.07995 * 119.99539 * 179.97438 * 4 3 2 37 37 H 1.08003 * 120.00103 * 180.02562 * 5 4 3 38 38 H 1.09002 * 117.49989 * 0.02562 * 9 7 6 39 39 H 1.09004 * 117.49868 * 145.02050 * 9 7 6 40 40 H 1.08992 * 109.88341 * 298.32203 * 15 14 12 41 41 H 1.09005 * 109.88077 * 59.33536 * 15 14 12 42 42 H 1.09005 * 110.71177 * 96.17410 * 16 15 14 43 43 H 1.08995 * 110.72482 * 219.44327 * 16 15 14 44 44 H 1.08995 * 109.47007 * 186.45062 * 19 17 16 45 45 H 1.08998 * 109.46796 * 306.45333 * 19 17 16 46 46 H 1.09002 * 109.47406 * 95.11588 * 21 20 19 47 47 H 1.08999 * 109.47560 * 215.12263 * 21 20 19 48 48 H 1.09003 * 109.46867 * 335.11773 * 21 20 19 49 49 H 0.97005 * 120.00498 * 180.02562 * 25 24 22 50 50 H 1.08999 * 110.37149 * 323.00382 * 30 14 12 51 51 H 1.09005 * 110.36548 * 85.33202 * 30 14 12 52 52 H 1.08003 * 119.99584 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0002 6 6 3.5806 -1.1969 0.0000 7 6 4.3342 -2.5020 -0.0002 8 1 3.8013 -3.3526 0.4246 9 6 5.8491 -2.4431 0.2055 10 6 5.2761 -2.7735 -1.1749 11 1 5.3504 -2.0085 -1.9477 12 6 5.3966 -4.1967 -1.6556 13 8 4.7601 -5.0757 -1.1140 14 7 6.2116 -4.4929 -2.6874 15 6 7.0370 -3.5300 -3.4310 16 6 7.8187 -4.3247 -4.4982 17 6 7.8187 -5.7671 -3.9267 18 1 8.6124 -5.8957 -3.1908 19 6 7.9414 -6.8012 -5.0477 20 7 9.2590 -6.6849 -5.6773 21 6 9.4487 -5.7863 -6.8187 22 6 10.3134 -7.4160 -5.1989 23 1 10.1325 -8.2975 -4.6018 24 6 11.6147 -7.0242 -5.4815 25 7 11.8522 -5.8152 -5.9443 26 14 13.0290 -8.2128 -5.2048 27 1 13.1838 -9.0842 -6.3973 28 1 14.2826 -7.4478 -4.9847 29 1 12.7448 -9.0512 -4.0126 30 6 6.4279 -5.8370 -3.2531 31 6 2.1981 -1.1969 0.0057 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 0.8900 0.5138 34 1 -0.3633 -0.8900 0.5139 35 1 1.6582 2.1327 -0.0004 36 1 4.1203 2.1327 -0.0010 37 1 5.3517 0.0001 -0.0002 38 1 6.3007 -1.4604 0.3415 39 1 6.3130 -3.2552 0.7654 40 1 6.3989 -2.7897 -3.9135 41 1 7.7312 -3.0347 -2.7520 42 1 7.3039 -4.2903 -5.4584 43 1 8.8368 -3.9469 -4.5916 44 1 7.8240 -7.8023 -4.6329 45 1 7.1657 -6.6232 -5.7926 46 1 9.8226 -4.8250 -6.4662 47 1 10.1682 -6.2244 -7.5104 48 1 8.4965 -5.6409 -7.3288 49 1 12.7615 -5.5415 -6.1422 50 1 6.4264 -6.5865 -2.4617 51 1 5.6612 -6.0647 -3.9938 52 1 1.6581 -2.1323 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567738742.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:12 Heat of formation + Delta-G solvation = 32.832626 kcal Electronic energy + Delta-G solvation = -29068.864125 eV Core-core repulsion = 25227.323037 eV Total energy + Delta-G solvation = -3841.541088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.48832 -39.56574 -37.91785 -36.41449 -35.33745 -32.81866 -32.22930 -31.11752 -30.36927 -29.14125 -27.22374 -26.31707 -25.79587 -24.24555 -23.71862 -22.53185 -22.18858 -21.19340 -20.00825 -19.69984 -18.86809 -17.58770 -16.82572 -16.59875 -16.07855 -15.79396 -15.28265 -15.09235 -14.79525 -14.37718 -14.17637 -14.09197 -13.61217 -13.49746 -13.47375 -13.27738 -13.04848 -12.68221 -12.60681 -12.52706 -12.41043 -12.07978 -11.97736 -11.72234 -11.56129 -11.42733 -11.21145 -11.05450 -10.88803 -10.76621 -10.74173 -10.64571 -10.47892 -10.19591 -10.03307 -9.86313 -9.81073 -9.74249 -9.01601 -8.76883 -8.55404 -8.47335 -6.79812 -5.74223 -3.17140 1.01280 1.11644 2.51589 3.01947 3.38042 3.38883 3.44854 3.45309 3.84296 4.21977 4.46428 4.49281 4.57395 4.60080 4.66994 4.76879 4.83576 4.94238 4.98664 5.04752 5.10263 5.17406 5.27272 5.27889 5.38732 5.43071 5.46020 5.51031 5.52319 5.64590 5.70861 5.75128 5.81077 5.83857 5.88376 5.93545 6.02056 6.18817 6.20301 6.29951 6.30676 6.33227 6.38331 6.54783 6.60434 6.70540 6.73476 6.79363 6.98106 7.36488 7.65817 7.70127 7.80696 8.24158 8.37767 9.22739 9.86561 10.34365 11.30946 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022811 B = 0.001877 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.157763 B =14914.792002 C =15083.670361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.126 0.874 9 C -0.143 4.143 10 C -0.170 4.170 11 H 0.123 0.877 12 C 0.555 3.445 13 O -0.549 6.549 14 N -0.609 5.609 15 C 0.100 3.900 16 C -0.114 4.114 17 C -0.116 4.116 18 H 0.083 0.917 19 C 0.163 3.837 20 N -0.599 5.599 21 C 0.164 3.836 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.001 3.999 25 N -0.907 5.907 26 Si 0.903 3.097 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.108 3.892 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.040 0.960 46 H 0.031 0.969 47 H 0.041 0.959 48 H -0.004 1.004 49 H 0.252 0.748 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 14.722 10.421 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.105 4.105 8 H 0.144 0.856 9 C -0.180 4.180 10 C -0.191 4.191 11 H 0.141 0.859 12 C 0.344 3.656 13 O -0.427 6.427 14 N -0.342 5.342 15 C -0.023 4.023 16 C -0.152 4.152 17 C -0.138 4.138 18 H 0.102 0.898 19 C 0.035 3.965 20 N -0.321 5.321 21 C 0.019 3.981 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.197 4.197 25 N -0.553 5.553 26 Si 0.733 3.267 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.014 4.014 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.062 0.938 50 H 0.091 0.909 51 H 0.082 0.918 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.584 14.338 10.680 25.787 hybrid contribution 1.044 -0.357 0.046 1.104 sum -17.540 13.981 10.726 24.863 Atomic orbital electron populations 1.20800 0.91157 1.02775 1.02425 1.19912 0.96106 0.93053 0.99444 1.21035 0.94318 0.97451 1.01618 1.21105 0.94280 0.97891 0.99841 1.21072 1.00106 0.91908 1.01250 1.19121 0.93304 0.92934 0.99238 1.21080 0.91915 0.96785 1.00671 0.85582 1.23136 0.95329 1.03719 0.95842 1.22319 1.07294 0.95968 0.93549 0.85866 1.19202 0.78564 0.89092 0.78754 1.90678 1.45858 1.49131 1.57047 1.48498 1.43058 1.10399 1.32254 1.22162 0.93484 0.92138 0.94510 1.22570 1.00801 0.95291 0.96509 1.23169 0.94281 0.96676 0.99701 0.89833 1.20734 0.88223 0.95608 0.91948 1.43952 1.05274 1.50120 1.32712 1.20818 0.94459 0.94388 0.88391 1.19218 0.84920 1.03959 1.30125 0.91331 1.24940 0.97440 0.95967 1.01381 1.70067 1.19314 1.16310 1.49591 0.86299 0.82038 0.80390 0.77970 1.21523 1.21841 1.20617 1.22372 0.98022 0.83660 0.97361 1.20889 0.93338 0.97797 1.00790 0.91106 0.91575 0.91454 0.86213 0.85989 0.85823 0.87378 0.87651 0.92025 0.91584 0.91277 0.89213 0.93477 0.94170 0.95104 0.94069 0.98535 0.93823 0.90906 0.91789 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.13 -1.01 9.70 -39.58 -0.38 -1.40 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.31 16 5 C -0.13 -1.12 9.30 -39.58 -0.37 -1.48 16 6 C -0.05 -0.46 5.61 -104.62 -0.59 -1.05 16 7 C -0.09 -0.92 5.55 -91.78 -0.51 -1.43 16 8 H 0.13 1.50 7.67 -51.93 -0.40 1.10 16 9 C -0.14 -1.40 9.57 -26.70 -0.26 -1.65 16 10 C -0.17 -1.96 5.17 -91.74 -0.47 -2.44 16 11 H 0.12 1.27 7.74 -51.93 -0.40 0.87 16 12 C 0.56 8.42 7.63 -10.98 -0.08 8.33 16 13 O -0.55 -10.04 16.51 5.55 0.09 -9.95 16 14 N -0.61 -9.10 3.33 -170.66 -0.57 -9.66 16 15 C 0.10 1.32 6.28 -3.06 -0.02 1.30 16 16 C -0.11 -1.79 5.39 -24.90 -0.13 -1.93 16 17 C -0.12 -2.02 3.27 -88.59 -0.29 -2.31 16 18 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 19 C 0.16 3.15 5.22 -4.04 -0.02 3.13 16 20 N -0.60 -14.27 2.85 -181.12 -0.52 -14.78 16 21 C 0.16 3.83 8.18 59.85 0.49 4.32 16 22 C -0.25 -6.72 9.68 -15.06 -0.15 -6.87 16 23 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 24 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 25 N -0.91 -25.57 10.67 55.49 0.59 -24.98 16 26 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 C 0.11 1.71 6.37 -2.65 -0.02 1.69 16 31 C -0.11 -1.06 9.39 -39.58 -0.37 -1.43 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.92 6.02 -52.48 -0.32 0.61 16 38 H 0.11 0.83 6.18 -51.93 -0.32 0.51 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 43 H 0.09 1.62 7.76 -51.93 -0.40 1.21 16 44 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 45 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 46 H 0.03 0.76 6.92 -51.93 -0.36 0.40 16 47 H 0.04 1.06 7.22 -51.93 -0.37 0.68 16 48 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 49 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 50 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 51 H 0.06 0.96 8.03 -51.93 -0.42 0.54 16 52 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 416.00 15.07 6.27 6.27 Total: -1.00 -30.90 416.00 -11.89 -42.79 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.82 Total: 0.05 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.91 Total: -6.29 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.49 Total: -49.43 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.90 -11.89 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567738742.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.626 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds