Wall clock time and date at job start Wed Apr 1 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.45830 * 2 1 4 4 N 1.46504 * 109.46818 * 299.99684 * 3 2 1 5 5 C 1.34786 * 119.99717 * 180.02562 * 4 3 2 6 6 O 1.21270 * 119.99937 * 4.70760 * 5 4 3 7 7 C 1.50701 * 119.99627 * 184.70425 * 5 4 3 8 8 C 1.50699 * 115.55270 * 294.31224 * 7 5 4 9 9 C 1.38233 * 120.00024 * 149.52488 * 8 7 5 10 10 C 1.38233 * 119.99844 * 179.78583 * 9 8 7 11 11 C 1.38237 * 119.99908 * 0.44763 * 10 9 8 12 12 C 1.38229 * 120.00036 * 359.80853 * 11 10 9 13 13 C 1.38235 * 120.00253 * 359.97438 * 12 11 10 14 14 C 1.53001 * 117.49462 * 148.63957 * 7 5 4 15 15 C 1.53004 * 117.49714 * 79.98482 * 7 5 4 16 16 C 1.53035 * 109.46394 * 240.03817 * 2 1 3 17 17 C 1.53193 * 109.31507 * 301.34428 * 16 2 1 18 18 N 1.46927 * 108.77299 * 305.36790 * 17 16 2 19 19 C 1.36936 * 120.62737 * 233.62929 * 18 17 16 20 20 H 1.07997 * 120.00225 * 31.26531 * 19 18 17 21 21 C 1.38815 * 119.99935 * 211.27036 * 19 18 17 22 22 N 1.31616 * 120.00093 * 10.80036 * 21 19 18 23 23 Si 1.86798 * 120.00073 * 190.79754 * 21 19 18 24 24 H 1.48504 * 109.47296 * 59.99648 * 23 21 19 25 25 H 1.48500 * 109.47281 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47284 * 300.00092 * 23 21 19 27 27 C 1.46919 * 118.74211 * 53.60069 * 18 17 16 28 28 C 1.53045 * 109.46085 * 119.96778 * 2 1 3 29 29 H 1.08996 * 109.47170 * 300.03034 * 1 2 3 30 30 H 1.08998 * 109.47348 * 60.03220 * 1 2 3 31 31 H 1.09005 * 109.46674 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47623 * 59.99531 * 3 2 1 33 33 H 1.09007 * 109.47538 * 180.02562 * 3 2 1 34 34 H 0.96992 * 120.00253 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.99833 * 0.02562 * 9 8 7 36 36 H 1.08006 * 119.99846 * 180.27740 * 10 9 8 37 37 H 1.08007 * 119.99894 * 179.83041 * 11 10 9 38 38 H 1.08009 * 119.99825 * 180.02562 * 12 11 10 39 39 H 1.07994 * 120.00156 * 179.97438 * 13 12 11 40 40 H 1.08996 * 117.50084 * 0.02562 * 14 7 5 41 41 H 1.09003 * 117.49638 * 145.01907 * 14 7 5 42 42 H 1.08998 * 117.49313 * 214.98117 * 15 7 5 43 43 H 1.09003 * 117.49736 * 359.97148 * 15 7 5 44 44 H 1.09002 * 109.50056 * 61.29401 * 16 2 1 45 45 H 1.09001 * 109.50067 * 181.39032 * 16 2 1 46 46 H 1.08991 * 109.59074 * 185.57527 * 17 16 2 47 47 H 1.09000 * 109.58282 * 65.14907 * 17 16 2 48 48 H 0.96999 * 120.00395 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.58774 * 186.60399 * 27 18 17 50 50 H 1.09003 * 109.70305 * 66.25386 * 27 18 17 51 51 H 1.08997 * 109.49646 * 178.60647 * 28 2 1 52 52 H 1.08997 * 109.49632 * 298.70389 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5512 2.1330 -1.1963 5 6 1.8769 3.4234 -1.4098 6 8 2.6429 3.9878 -0.6579 7 6 1.2894 4.1645 -2.5831 8 6 1.7085 3.6668 -3.9424 9 6 0.8462 3.7815 -5.0166 10 6 1.2324 3.3289 -6.2643 11 6 2.4775 2.7533 -6.4359 12 6 3.3377 2.6338 -5.3605 13 6 2.9533 3.0905 -4.1137 14 6 1.0539 5.6678 -2.4229 15 6 -0.1350 4.7038 -2.4365 16 6 2.0399 -0.7206 -1.2501 17 6 1.4997 -2.1541 -1.2644 18 7 1.8626 -2.8088 -0.0001 19 6 2.5270 -4.0062 -0.0002 20 1 3.2137 -4.2427 -0.7995 21 6 2.3179 -4.9160 1.0271 22 7 1.3345 -4.7292 1.8817 23 14 3.4322 -6.4057 1.1967 24 1 4.8334 -5.9557 1.3956 25 1 3.0021 -7.2151 2.3650 26 1 3.3474 -7.2301 -0.0355 27 6 1.4997 -2.1542 1.2641 28 6 2.0399 -0.7208 1.2501 29 1 -0.3633 0.5143 0.8897 30 1 -0.3634 0.5133 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6762 1.9564 0.8899 33 1 3.1297 1.4429 -0.0005 34 1 0.9940 1.6614 -1.8349 35 1 -0.1279 4.2282 -4.8818 36 1 0.5603 3.4226 -7.1046 37 1 2.7782 2.3972 -7.4102 38 1 4.3107 2.1845 -5.4947 39 1 3.6253 2.9967 -3.2735 40 1 1.3244 6.1208 -1.4691 41 1 1.2019 6.2968 -3.3007 42 1 -0.7686 4.6988 -3.3234 43 1 -0.6472 4.5220 -1.4917 44 1 1.6958 -0.1933 -2.1398 45 1 3.1296 -0.7426 -1.2383 46 1 1.9383 -2.7016 -2.0985 47 1 0.4148 -2.1346 -1.3675 48 1 1.1886 -5.3647 2.5998 49 1 1.9382 -2.7019 2.0982 50 1 0.4149 -2.1349 1.3698 51 1 3.1296 -0.7428 1.2383 52 1 1.6958 -0.1935 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569707269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:31 Heat of formation + Delta-G solvation = 28.729371 kcal Electronic energy + Delta-G solvation = -30621.683676 eV Core-core repulsion = 26779.964658 eV Total energy + Delta-G solvation = -3841.719018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -40.75357 -39.27670 -38.41747 -36.57250 -35.03223 -33.06813 -31.26466 -30.97917 -30.77079 -29.80178 -27.24884 -26.97205 -24.93218 -23.77865 -23.12664 -22.58361 -22.22484 -21.73702 -20.66397 -19.69961 -18.09568 -17.85314 -16.83784 -16.33586 -15.90946 -15.52459 -15.17996 -15.06217 -14.78712 -14.64998 -14.19107 -13.93991 -13.88209 -13.58448 -13.45555 -13.26146 -13.13897 -12.93468 -12.88235 -12.52758 -11.99756 -11.97830 -11.59627 -11.42571 -11.37314 -11.27885 -11.13721 -10.99833 -10.83082 -10.74612 -10.72471 -10.48326 -10.20522 -10.19013 -9.93907 -9.75139 -9.48209 -9.40754 -9.16059 -8.98066 -8.81982 -8.44944 -6.58707 -5.77438 -3.24719 1.04908 1.16600 2.50475 3.08199 3.32599 3.38271 3.43660 3.44758 3.74949 4.18287 4.49217 4.50472 4.51697 4.64101 4.75704 4.80877 4.93406 5.06971 5.15135 5.16339 5.27001 5.28980 5.36688 5.42796 5.44636 5.53788 5.57729 5.74520 5.76663 5.78208 5.82481 5.86618 5.95102 6.09474 6.13817 6.14396 6.22794 6.29486 6.33108 6.35259 6.48587 6.50930 6.51667 6.65057 6.71654 6.73780 6.80589 6.89885 7.00951 7.40190 7.54165 7.72282 7.80007 8.20885 8.49315 9.24174 9.85839 10.44037 11.30490 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015371 B = 0.002730 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.146791 B =10252.225437 C =11273.161707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C 0.128 3.872 4 N -0.713 5.713 5 C 0.551 3.449 6 O -0.540 6.540 7 C -0.123 4.123 8 C -0.043 4.043 9 C -0.117 4.117 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.134 4.134 15 C -0.156 4.156 16 C -0.121 4.121 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.062 0.938 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.173 3.827 28 C -0.129 4.129 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.020 0.980 48 H 0.254 0.746 49 H 0.087 0.913 50 H 0.021 0.979 51 H 0.056 0.944 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 19.299 -13.088 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C 0.005 3.995 4 N -0.364 5.364 5 C 0.335 3.665 6 O -0.417 6.417 7 C -0.126 4.126 8 C -0.043 4.043 9 C -0.135 4.135 10 C -0.135 4.135 11 C -0.139 4.139 12 C -0.130 4.130 13 C -0.125 4.125 14 C -0.171 4.171 15 C -0.193 4.193 16 C -0.160 4.160 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.080 0.920 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.048 3.952 28 C -0.169 4.169 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.039 0.961 51 H 0.075 0.925 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.745 19.553 -12.370 23.299 hybrid contribution 0.357 -1.085 -0.183 1.157 sum -2.388 18.468 -12.553 22.457 Atomic orbital electron populations 1.21935 0.94736 1.03012 1.00177 1.20687 0.95742 0.91908 0.97941 1.21603 0.99099 0.92386 0.86386 1.46057 1.53163 1.11364 1.25819 1.19262 0.80782 0.81896 0.84530 1.90698 1.35016 1.68046 1.47935 1.20166 1.01769 0.98206 0.92479 1.18756 0.94482 0.99190 0.91883 1.21002 0.99388 1.00745 0.92374 1.21110 0.96581 0.98780 0.97013 1.21193 0.94340 0.99446 0.98949 1.21163 0.99907 0.99345 0.92623 1.21025 0.95645 0.98035 0.97750 1.23069 1.00086 0.89512 1.04436 1.23209 0.89452 1.02411 1.04260 1.22054 1.00696 0.98214 0.95051 1.20920 0.96278 0.90680 0.90187 1.43973 1.66719 1.21270 0.99409 1.19129 1.17322 0.92531 1.09246 0.92009 1.25139 0.97058 0.97512 0.99706 1.69956 1.29756 1.37148 1.18121 0.86357 0.80384 0.82681 0.77221 1.21015 1.21621 1.20909 1.20783 0.96542 0.87512 0.90396 1.22213 1.00606 0.99673 0.94371 0.93238 0.93945 0.90710 0.91840 0.91650 0.76194 0.85746 0.85913 0.85997 0.85798 0.86148 0.87405 0.87782 0.87396 0.87810 0.93591 0.92293 0.93119 0.96258 0.93586 0.89483 0.96077 0.92536 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.54 37.16 0.28 -1.81 16 2 C -0.06 -0.98 0.53 -154.47 -0.08 -1.06 16 3 C 0.13 1.86 4.57 -4.04 -0.02 1.84 16 4 N -0.71 -9.11 4.95 -60.29 -0.30 -9.41 16 5 C 0.55 7.44 5.92 -10.98 -0.06 7.38 16 6 O -0.54 -9.24 16.71 5.57 0.09 -9.14 16 7 C -0.12 -1.29 2.36 -156.81 -0.37 -1.66 16 8 C -0.04 -0.44 5.48 -104.62 -0.57 -1.01 16 9 C -0.12 -1.01 9.36 -39.59 -0.37 -1.38 16 10 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 11 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 12 C -0.11 -1.10 10.05 -39.59 -0.40 -1.49 16 13 C -0.11 -1.18 9.32 -39.58 -0.37 -1.55 16 14 C -0.13 -1.21 9.74 -26.69 -0.26 -1.47 16 15 C -0.16 -1.25 9.57 -26.69 -0.26 -1.51 16 16 C -0.12 -2.01 4.75 -26.61 -0.13 -2.13 16 17 C 0.15 2.95 6.05 -3.71 -0.02 2.93 16 18 N -0.59 -14.42 2.99 -172.33 -0.51 -14.93 16 19 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 20 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 21 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 22 N -0.91 -25.94 11.05 55.49 0.61 -25.32 16 23 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.17 4.00 4.78 -3.72 -0.02 3.98 16 28 C -0.13 -2.38 4.91 -26.61 -0.13 -2.51 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.54 6.86 -51.93 -0.36 0.18 16 31 H 0.07 1.30 4.98 -51.93 -0.26 1.04 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.40 4.70 6.16 -40.82 -0.25 4.44 16 35 H 0.12 0.82 5.94 -52.49 -0.31 0.51 16 36 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.48 7.35 -52.49 -0.39 1.09 16 40 H 0.11 1.07 8.00 -51.93 -0.42 0.65 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.65 6.10 -51.93 -0.32 0.34 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.66 6.82 -51.93 -0.35 0.30 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.39 6.69 -51.93 -0.35 0.05 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.09 2.30 6.10 -51.93 -0.32 1.98 16 50 H 0.02 0.51 6.70 -51.93 -0.35 0.16 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -30.91 401.33 -11.16 -42.08 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.27 Total: 5.32 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -3.81 Total: -11.22 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.20 Total: -49.67 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.91 -11.16 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569707269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.805 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds