Wall clock time and date at job start Wed Apr 1 2020 03:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47066 * 2 1 4 4 C 1.38259 * 120.00404 * 265.01890 * 3 2 1 5 5 C 1.38212 * 120.00224 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.00024 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99916 * 359.75132 * 6 5 4 8 8 C 1.38214 * 119.99938 * 85.00488 * 3 2 1 9 9 C 1.50699 * 119.99689 * 359.97438 * 8 3 2 10 10 H 1.09000 * 115.55278 * 334.33522 * 9 8 3 11 11 C 1.53077 * 117.49112 * 188.60615 * 9 8 3 12 12 C 1.53003 * 117.49936 * 120.00524 * 9 8 3 13 13 H 1.09001 * 117.49721 * 359.97438 * 12 9 8 14 14 C 1.50694 * 117.49926 * 214.97925 * 12 9 8 15 15 O 1.21279 * 120.00418 * 0.08459 * 14 12 9 16 16 N 1.34781 * 119.99804 * 180.08522 * 14 12 9 17 17 C 1.46504 * 119.99980 * 180.02562 * 16 14 12 18 18 C 1.53775 * 113.61368 * 204.99893 * 17 16 14 19 19 C 1.53779 * 87.08534 * 219.93448 * 18 17 16 20 20 C 1.52996 * 113.61746 * 139.97887 * 19 18 17 21 21 N 1.46502 * 109.47116 * 176.53114 * 20 19 18 22 22 C 1.36930 * 120.00159 * 180.02562 * 21 20 19 23 23 H 1.08000 * 119.99841 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00182 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99887 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00212 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.47261 * 330.00122 * 26 24 22 29 29 H 1.48500 * 109.47454 * 210.00115 * 26 24 22 30 30 C 1.53781 * 87.17077 * 25.39001 * 19 18 17 31 31 H 1.08993 * 109.46979 * 299.99966 * 1 2 3 32 32 H 1.09003 * 109.46807 * 59.99998 * 1 2 3 33 33 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47564 * 240.00482 * 2 1 3 35 35 H 1.08998 * 109.47679 * 120.00079 * 2 1 3 36 36 H 1.07998 * 119.99705 * 359.97438 * 4 3 2 37 37 H 1.08000 * 120.00182 * 179.97438 * 5 4 3 38 38 H 1.08003 * 119.99987 * 179.97438 * 6 5 4 39 39 H 1.07999 * 120.00232 * 180.27456 * 7 6 5 40 40 H 1.08997 * 117.51143 * 145.04326 * 11 9 8 41 41 H 1.08997 * 117.49873 * 359.97438 * 11 9 8 42 42 H 0.96998 * 119.99923 * 359.97438 * 16 14 12 43 43 H 1.09001 * 112.85088 * 336.19571 * 17 16 14 44 44 H 1.09006 * 113.61549 * 105.38472 * 18 17 16 45 45 H 1.09006 * 113.69311 * 334.49573 * 18 17 16 46 46 H 1.09005 * 113.61502 * 270.80537 * 19 18 17 47 47 H 1.08997 * 109.46988 * 56.53450 * 20 19 18 48 48 H 1.08990 * 109.47518 * 296.52999 * 20 19 18 49 49 H 0.97008 * 119.99482 * 0.02562 * 21 20 19 50 50 H 0.96993 * 120.00105 * 359.97438 * 25 24 22 51 51 H 1.09002 * 113.61290 * 89.15855 * 30 19 18 52 52 H 1.09003 * 113.61760 * 220.06621 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0380 -1.1928 5 6 2.8220 3.3409 -1.1927 6 6 2.9544 4.0273 0.0002 7 6 2.6206 3.4123 1.1920 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4347 2.4925 10 1 1.0739 0.6300 2.4193 11 6 1.7792 2.3025 3.7532 12 6 2.9092 1.2927 3.5426 13 1 3.8949 1.6853 3.2930 14 6 2.9012 0.0513 4.3969 15 8 2.0419 -0.7895 4.2369 16 7 3.8491 -0.1245 5.3388 17 6 3.8417 -1.3316 6.1690 18 6 4.5342 -1.1477 7.5296 19 6 5.1180 -2.5569 7.3346 20 6 6.5737 -2.6854 7.7876 21 7 7.0103 -4.0760 7.6395 22 6 8.2860 -4.4337 7.9855 23 1 8.9701 -3.6907 8.3680 24 6 8.6994 -5.7514 7.8457 25 7 7.8654 -6.6570 7.3800 26 14 10.4399 -6.2392 8.3170 27 1 10.4714 -6.6417 9.7462 28 1 11.3513 -5.0856 8.1076 29 1 10.8808 -7.3781 7.4722 30 6 4.9613 -2.3297 5.8218 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.2577 1.5017 -2.1245 37 1 3.0789 3.8229 -2.1244 38 1 3.3151 5.0453 0.0003 39 1 2.7198 3.9499 2.1234 40 1 1.0301 2.0689 4.5097 41 1 2.0218 3.3593 3.6419 42 1 4.5365 0.5477 5.4666 43 1 2.8557 -1.7909 6.2395 44 1 3.8398 -1.0747 8.3667 45 1 5.2875 -0.3599 7.5348 46 1 4.4815 -3.3511 7.7250 47 1 6.6566 -2.3880 8.8329 48 1 7.2031 -2.0399 7.1752 49 1 6.3955 -4.7434 7.2963 50 1 6.9618 -6.4036 7.1349 51 1 5.8315 -1.8655 5.3576 52 1 4.6112 -3.2095 5.2820 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570570955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:28 Heat of formation + Delta-G solvation = 29.121178 kcal Electronic energy + Delta-G solvation = -28539.502029 eV Core-core repulsion = 24697.800000 eV Total energy + Delta-G solvation = -3841.702028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -40.75646 -39.86668 -38.59797 -36.51935 -34.78744 -34.50893 -33.40131 -31.00439 -30.69024 -29.65363 -26.84302 -25.58378 -25.00132 -24.28391 -24.05890 -22.97468 -21.49338 -21.33471 -20.60355 -20.28451 -19.32126 -17.75776 -17.18599 -16.86141 -16.38898 -15.88164 -15.48053 -15.16841 -15.03099 -14.76429 -14.41251 -14.17764 -14.00277 -13.79488 -13.72175 -13.52726 -13.38380 -13.04765 -12.88327 -12.57698 -12.36423 -12.17290 -12.09253 -11.92898 -11.80051 -11.71951 -11.25044 -11.19451 -11.00534 -10.84129 -10.75746 -10.73480 -10.52967 -10.36780 -10.10504 -9.99311 -9.89771 -9.13968 -9.11536 -9.03657 -8.84038 -8.80324 -6.96563 -6.07981 -3.07038 0.94504 1.05201 2.32229 2.97028 3.28925 3.52472 3.57805 3.70286 3.71802 4.17175 4.34520 4.44901 4.49943 4.53047 4.60057 4.64746 4.66858 4.76925 4.79920 4.85351 4.88296 4.97315 5.05067 5.09380 5.16647 5.18757 5.28010 5.29892 5.52137 5.56519 5.61778 5.66490 5.68263 5.70417 5.73461 5.77434 5.84111 5.84532 5.95504 5.97580 5.98659 6.14340 6.17753 6.18821 6.24069 6.30215 6.36619 6.56322 6.66596 6.71130 6.84543 7.40042 7.83170 8.09919 8.78808 9.26885 10.13207 10.28685 11.40900 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.001757 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.701371 B =15931.417323 C =16328.843945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.067 4.067 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.052 4.052 9 C -0.084 4.084 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.178 4.178 13 H 0.125 0.875 14 C 0.542 3.458 15 O -0.541 6.541 16 N -0.712 5.712 17 C 0.119 3.881 18 C -0.136 4.136 19 C -0.113 4.113 20 C 0.171 3.829 21 N -0.743 5.743 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.048 4.048 25 N -0.945 5.945 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.288 1.288 30 C -0.139 4.139 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.401 0.599 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.367 0.633 50 H 0.255 0.745 51 H 0.084 0.916 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 24.882 -14.461 32.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.067 4.067 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.052 4.052 9 C -0.102 4.102 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.200 4.200 13 H 0.143 0.857 14 C 0.329 3.671 15 O -0.418 6.418 16 N -0.362 5.362 17 C 0.014 3.986 18 C -0.175 4.175 19 C -0.132 4.132 20 C 0.044 3.956 21 N -0.389 5.389 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.245 4.245 25 N -0.590 5.590 26 Si 0.914 3.086 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.214 1.214 30 C -0.177 4.177 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.235 0.765 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.200 0.800 50 H 0.067 0.933 51 H 0.102 0.898 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.692 23.166 -14.394 30.979 hybrid contribution -0.685 1.518 -0.122 1.670 sum -15.377 24.684 -14.516 32.503 Atomic orbital electron populations 1.21738 0.94543 1.01998 1.02011 1.20616 0.96393 0.92478 1.03436 1.19752 0.98358 0.96259 0.92362 1.21049 0.99801 0.95178 0.97455 1.21144 0.99767 0.94808 0.98118 1.21094 1.00604 0.99963 0.92506 1.21042 0.99645 0.94464 0.98362 1.18961 0.99760 0.93740 0.92742 1.21141 1.00269 1.01707 0.87129 0.85206 1.23147 0.99090 0.96411 0.99596 1.22373 0.97097 0.97924 1.02558 0.85739 1.19621 0.81085 0.86501 0.79922 1.90698 1.37634 1.44615 1.68853 1.45962 1.30558 1.23247 1.36413 1.22696 1.00010 0.85469 0.90381 1.23316 0.99605 0.98341 0.96205 1.22552 0.98559 0.96267 0.95859 1.20526 0.90148 0.87827 0.97131 1.42362 1.12936 1.04247 1.79341 1.20065 0.89674 0.96126 1.40393 0.91817 1.25790 1.06325 0.91765 1.00613 1.70840 1.06839 1.34855 1.46511 0.83186 0.74051 0.75268 0.76046 1.22327 1.22204 1.21379 1.23479 0.98151 0.99017 0.97092 0.92400 0.92741 0.92159 0.91041 0.90187 0.86024 0.86135 0.86100 0.85896 0.87709 0.87404 0.76465 0.86956 0.90957 0.89621 0.89041 0.96284 0.96310 0.79997 0.93350 0.89766 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.74 37.16 0.36 -0.76 16 2 C -0.09 -0.79 5.38 -27.88 -0.15 -0.94 16 3 C -0.07 -0.60 5.13 -104.62 -0.54 -1.14 16 4 C -0.12 -0.94 9.68 -39.58 -0.38 -1.32 16 5 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 6 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 7 C -0.12 -0.89 9.30 -39.58 -0.37 -1.26 16 8 C -0.05 -0.46 5.61 -104.62 -0.59 -1.04 16 9 C -0.08 -0.76 4.66 -91.73 -0.43 -1.18 16 10 H 0.13 1.36 5.47 -51.93 -0.28 1.07 16 11 C -0.15 -1.05 9.57 -26.69 -0.26 -1.30 16 12 C -0.18 -1.58 5.82 -91.77 -0.53 -2.11 16 13 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.54 6.48 7.61 -10.99 -0.08 6.40 16 15 O -0.54 -8.50 15.86 5.56 0.09 -8.41 16 16 N -0.71 -7.64 5.36 -52.93 -0.28 -7.92 16 17 C 0.12 1.50 4.24 -67.03 -0.28 1.22 16 18 C -0.14 -1.64 7.39 -25.92 -0.19 -1.83 16 19 C -0.11 -1.79 3.75 -89.81 -0.34 -2.13 16 20 C 0.17 3.47 6.08 -4.04 -0.02 3.45 16 21 N -0.74 -19.20 5.60 -59.92 -0.34 -19.53 16 22 C -0.33 -9.59 9.99 -15.06 -0.15 -9.75 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.05 -1.41 5.50 -17.43 -0.10 -1.51 16 25 N -0.94 -29.84 13.70 55.49 0.76 -29.08 16 26 Si 1.08 26.41 29.92 -169.99 -5.09 21.32 16 27 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.30 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 C -0.14 -2.08 7.45 -25.83 -0.19 -2.28 16 31 H 0.06 0.47 7.17 -51.93 -0.37 0.09 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.08 0.81 6.94 -51.93 -0.36 0.45 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.12 0.71 6.02 -52.49 -0.32 0.40 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 0.56 6.17 -51.93 -0.32 0.24 16 42 H 0.40 3.27 8.73 -40.82 -0.36 2.91 16 43 H 0.11 1.56 7.46 -51.93 -0.39 1.17 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 0.93 8.08 -51.93 -0.42 0.52 16 46 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 49 H 0.37 9.70 6.50 -40.82 -0.27 9.44 16 50 H 0.26 7.95 6.77 -40.82 -0.28 7.67 16 51 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 52 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 419.06 15.07 6.32 6.32 Total: -1.00 -34.82 419.06 -12.03 -46.85 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.45 Total: 10.51 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -5.04 Total: -20.05 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.14 Total: -56.53 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -5.09 Total: 21.32 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.82 -12.03 -46.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570570955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.971 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds