Wall clock time and date at job start Wed Apr 1 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46985 * 2 1 4 4 C 1.38233 * 120.00269 * 90.00081 * 3 2 1 5 5 C 1.38237 * 120.00522 * 179.97438 * 4 3 2 6 6 C 1.38238 * 119.99263 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99212 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46761 * 90.00441 * 7 6 5 9 9 C 1.50708 * 109.47008 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99737 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00183 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00062 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46943 * 180.02562 * 12 11 9 14 14 C 1.29459 * 117.69855 * 94.99994 * 13 12 11 15 15 C 1.50316 * 123.65508 * 181.13441 * 14 13 12 16 16 N 1.47112 * 109.10903 * 348.54409 * 15 14 13 17 17 C 1.36938 * 121.51017 * 223.15910 * 16 15 14 18 18 H 1.07995 * 119.99619 * 156.18843 * 17 16 15 19 19 C 1.38811 * 120.00085 * 336.18389 * 17 16 15 20 20 N 1.31620 * 119.99972 * 344.47639 * 19 17 16 21 21 Si 1.86793 * 120.00126 * 164.48385 * 19 17 16 22 22 H 1.48499 * 109.47570 * 89.99770 * 21 19 17 23 23 H 1.48500 * 109.47362 * 209.99960 * 21 19 17 24 24 H 1.48506 * 109.46962 * 329.99743 * 21 19 17 25 25 C 1.47337 * 117.11209 * 43.34223 * 16 15 14 26 26 C 1.49969 * 117.69430 * 274.97585 * 13 12 11 27 27 C 1.38235 * 120.00352 * 0.25360 * 6 5 4 28 28 C 1.38233 * 120.00000 * 270.01874 * 3 2 1 29 29 H 1.08999 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47013 * 300.00166 * 1 2 3 31 31 H 1.09002 * 109.47024 * 59.99933 * 1 2 3 32 32 H 1.08998 * 109.46969 * 240.00294 * 2 1 3 33 33 H 1.08996 * 109.46975 * 119.99595 * 2 1 3 34 34 H 1.08005 * 119.99728 * 0.02562 * 4 3 2 35 35 H 1.07993 * 119.99966 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47927 * 330.00101 * 7 6 5 37 37 H 1.09002 * 109.46935 * 209.99914 * 7 6 5 38 38 H 1.08998 * 109.47442 * 59.99936 * 8 7 6 39 39 H 1.08993 * 109.47408 * 299.99043 * 8 7 6 40 40 H 0.97001 * 120.00055 * 0.02562 * 11 9 8 41 41 H 1.08998 * 109.46850 * 60.00101 * 12 11 9 42 42 H 1.08996 * 109.46793 * 299.99587 * 12 11 9 43 43 H 1.08004 * 118.16890 * 0.85747 * 14 13 12 44 44 H 1.09007 * 109.52102 * 108.65128 * 15 14 13 45 45 H 1.08999 * 109.52662 * 228.83517 * 15 14 13 46 46 H 0.97000 * 119.99856 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.77655 * 178.43578 * 25 16 15 48 48 H 1.08997 * 109.77795 * 57.62591 * 25 16 15 49 49 H 1.09000 * 109.31763 * 281.28924 * 26 13 12 50 50 H 1.09005 * 109.31493 * 40.72379 * 26 13 12 51 51 H 1.07997 * 119.99612 * 179.73051 * 27 6 5 52 52 H 1.08002 * 120.00092 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3757 1.1972 6 6 2.9543 4.0272 -0.0001 7 6 3.4566 5.4481 0.0000 8 6 4.9866 5.4480 -0.0001 9 6 5.4890 6.8689 -0.0007 10 8 4.7008 7.7908 -0.0014 11 7 6.8140 7.1152 -0.0003 12 6 7.3024 8.4964 -0.0014 13 6 8.8093 8.4964 -0.0014 14 6 9.4111 8.5954 -1.1433 15 6 10.9059 8.5841 -1.3010 16 7 11.5309 8.7234 0.0235 17 6 12.6032 9.5508 0.2254 18 1 12.8069 9.9396 1.2122 19 6 13.4284 9.8897 -0.8381 20 7 13.3793 9.1967 -1.9560 21 14 14.6087 11.3291 -0.6827 22 1 15.9088 10.8480 -0.1503 23 1 14.8178 11.9442 -2.0181 24 1 14.0378 12.3396 0.2438 25 6 10.9558 7.9305 1.1241 26 6 9.5063 8.3823 1.3216 27 6 2.7184 3.3775 -1.1972 28 6 2.2623 2.0726 -1.1971 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0831 1.5632 2.1325 35 1 2.9036 3.8848 2.1324 36 1 3.0934 5.9620 0.8900 37 1 3.0933 5.9619 -0.8900 38 1 5.3499 4.9343 -0.8901 39 1 5.3500 4.9343 0.8898 40 1 7.4444 6.3779 -0.0001 41 1 6.9387 9.0111 0.8879 42 1 6.9395 9.0093 -0.8921 43 1 8.8052 8.6868 -2.0327 44 1 11.2170 7.6444 -1.7574 45 1 11.2117 9.4166 -1.9347 46 1 13.9556 9.4337 -2.6993 47 1 11.5236 8.1025 2.0384 48 1 10.9803 6.8714 0.8676 49 1 9.4956 9.3518 1.8196 50 1 8.9835 7.6551 1.9430 51 1 2.8943 3.8881 -2.1324 52 1 2.0816 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571700248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:17 Heat of formation + Delta-G solvation = 0.194747 kcal Electronic energy + Delta-G solvation = -28028.822887 eV Core-core repulsion = 24185.866514 eV Total energy + Delta-G solvation = -3842.956373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -40.08545 -39.49086 -37.79540 -35.50143 -34.89396 -32.99996 -32.66265 -31.20293 -30.93088 -29.79488 -29.18328 -27.01787 -25.26076 -23.98146 -23.01710 -22.85604 -22.61016 -21.12229 -20.75471 -20.26692 -17.76344 -17.33612 -16.40080 -16.23892 -15.91758 -15.67403 -15.46368 -15.30141 -15.01593 -14.26685 -14.18891 -13.98191 -13.89618 -13.74518 -13.61812 -13.43824 -13.38011 -13.28571 -12.75702 -12.61996 -12.25699 -12.14429 -12.03513 -11.79652 -11.71767 -11.58503 -11.37637 -11.28973 -11.09960 -11.03490 -10.93879 -10.74578 -10.42920 -10.34387 -9.92431 -9.85645 -9.61858 -9.19426 -8.96336 -8.78496 -8.70227 -8.08322 -6.78048 -5.82872 -3.21449 1.03159 1.13133 2.58242 2.66298 3.36201 3.39626 3.43350 3.45765 3.60262 4.36976 4.45535 4.47104 4.56053 4.70985 4.72941 4.81599 4.94048 4.94932 5.02555 5.13035 5.17017 5.22467 5.23165 5.33183 5.37690 5.39136 5.48860 5.54249 5.56210 5.60723 5.70505 5.80173 5.80882 5.84436 5.93255 5.95351 6.04551 6.14166 6.15145 6.30668 6.32718 6.39023 6.44326 6.52699 6.70471 6.73792 6.83567 7.13296 7.22715 7.29540 7.58868 7.70044 7.79328 8.25784 8.34739 9.16195 9.79013 10.37128 11.27687 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.001517 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.752302 B =18448.834991 C =18729.427624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.064 4.064 8 C -0.135 4.135 9 C 0.508 3.492 10 O -0.549 6.549 11 N -0.721 5.721 12 C 0.157 3.843 13 C -0.167 4.167 14 C -0.124 4.124 15 C 0.193 3.807 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.143 3.857 26 C -0.090 4.090 27 C -0.113 4.113 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.402 0.598 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.094 0.906 46 H 0.254 0.746 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.479 -16.823 3.496 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.085 4.085 7 C -0.102 4.102 8 C -0.175 4.175 9 C 0.295 3.705 10 O -0.427 6.427 11 N -0.372 5.372 12 C 0.034 3.966 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.068 3.932 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.017 3.983 26 C -0.129 4.129 27 C -0.131 4.131 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.041 0.959 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.921 -16.093 3.356 29.025 hybrid contribution 0.966 0.412 -0.090 1.054 sum -22.954 -15.682 3.266 27.991 Atomic orbital electron populations 1.21749 0.94751 1.01668 1.02237 1.20542 0.96166 0.92748 1.02817 1.19893 0.99436 0.96253 0.93268 1.21011 1.00059 0.94906 0.97484 1.21070 0.99539 0.94775 0.97696 1.19919 0.99272 0.96069 0.93211 1.20321 0.93283 0.92095 1.04497 1.21653 0.96828 0.94249 1.04731 1.20698 0.82378 0.91451 0.76003 1.90696 1.55372 1.46582 1.50022 1.46237 1.06750 1.09554 1.74706 1.20443 0.92189 0.82194 1.01751 1.20501 0.92470 1.07549 0.96221 1.23281 1.00097 0.95001 0.96104 1.19779 0.83920 1.01202 0.88256 1.44150 1.34047 1.49079 1.04516 1.19174 1.02542 1.20288 0.95576 0.91351 1.24980 0.97919 0.99603 0.97370 1.70004 1.41285 1.39209 1.05019 0.86259 0.80862 0.82506 0.76949 1.21418 1.21549 1.20519 1.20957 0.91222 0.93624 0.92523 1.20754 0.97774 1.00753 0.93608 1.21076 0.99507 0.94761 0.97717 1.21014 1.00053 0.94875 0.97496 0.92430 0.92573 0.92561 0.91082 0.91093 0.86247 0.86016 0.90202 0.90195 0.88799 0.88813 0.76394 0.91680 0.91758 0.88819 0.94101 0.88851 0.93592 0.92453 0.95946 0.91765 0.92904 0.86000 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.49 6.06 -27.88 -0.17 -0.65 16 3 C -0.09 -0.67 5.13 -104.63 -0.54 -1.21 16 4 C -0.12 -0.90 9.70 -39.58 -0.38 -1.29 16 5 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 6 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 7 C -0.06 -0.60 4.63 -27.88 -0.13 -0.73 16 8 C -0.13 -1.21 5.68 -27.88 -0.16 -1.37 16 9 C 0.51 6.45 7.83 -10.98 -0.09 6.36 16 10 O -0.55 -9.03 15.98 5.55 0.09 -8.95 16 11 N -0.72 -9.02 5.55 -61.47 -0.34 -9.36 16 12 C 0.16 2.32 5.66 -5.19 -0.03 2.29 16 13 C -0.17 -2.80 5.22 -100.99 -0.53 -3.33 16 14 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 15 C 0.19 4.49 5.25 -5.05 -0.03 4.46 16 16 N -0.59 -14.61 3.01 -173.59 -0.52 -15.13 16 17 C -0.25 -6.68 9.71 -15.06 -0.15 -6.82 16 18 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 19 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 20 N -0.91 -25.89 11.07 55.49 0.61 -25.28 16 21 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.14 2.89 6.57 -3.53 -0.02 2.87 16 26 C -0.09 -1.53 5.95 -28.18 -0.17 -1.70 16 27 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 28 C -0.12 -0.91 9.70 -39.58 -0.38 -1.29 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.40 4.34 8.46 -40.82 -0.35 4.00 16 41 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 42 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 43 H 0.09 1.58 7.73 -52.48 -0.41 1.17 16 44 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.09 2.43 6.40 -51.93 -0.33 2.10 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 52 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 422.93 15.07 6.37 6.37 Total: -1.00 -31.21 422.93 -11.99 -43.20 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.04 Total: 2.13 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -4.13 Total: -9.48 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.25 Total: -49.77 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -31.21 -11.99 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571700248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.394 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds