Wall clock time and date at job start Wed Apr 1 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47569 * 2 1 4 4 C 1.38261 * 119.99677 * 265.18793 * 3 2 1 5 5 C 1.38210 * 119.99869 * 180.22585 * 4 3 2 6 6 C 1.38259 * 119.99814 * 359.81400 * 5 4 3 7 7 C 1.38206 * 120.00185 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.00241 * 84.99629 * 3 2 1 9 9 C 1.50700 * 120.00134 * 0.02562 * 8 3 2 10 10 H 1.09008 * 115.55811 * 334.03780 * 9 8 3 11 11 C 1.53066 * 117.49815 * 188.32842 * 9 8 3 12 12 C 1.52995 * 117.50112 * 119.72312 * 9 8 3 13 13 H 1.09002 * 117.49846 * 359.97438 * 12 9 8 14 14 C 1.50698 * 117.50381 * 214.98059 * 12 9 8 15 15 O 1.21286 * 119.99809 * 0.09002 * 14 12 9 16 16 N 1.34776 * 120.00053 * 180.08779 * 14 12 9 17 17 C 1.46510 * 119.99685 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46482 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47014 * 65.00587 * 18 17 16 20 20 N 1.46499 * 109.47493 * 304.99988 * 18 17 16 21 21 C 1.36939 * 119.99933 * 155.27860 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47144 * 90.00258 * 25 23 21 27 27 H 1.48500 * 109.47140 * 210.00775 * 25 23 21 28 28 H 1.48502 * 109.46967 * 330.00206 * 25 23 21 29 29 C 1.53008 * 109.46675 * 185.00168 * 18 17 16 30 30 C 1.53004 * 117.49479 * 248.62858 * 29 18 17 31 31 C 1.52997 * 117.49669 * 180.02562 * 29 18 17 32 32 H 1.09005 * 109.47032 * 300.00634 * 1 2 3 33 33 H 1.08996 * 109.46670 * 59.99933 * 1 2 3 34 34 H 1.08995 * 109.47427 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47167 * 239.99233 * 2 1 3 36 36 H 1.09004 * 109.47015 * 119.99522 * 2 1 3 37 37 H 1.07998 * 120.00172 * 0.02562 * 4 3 2 38 38 H 1.07995 * 120.00020 * 179.79021 * 5 4 3 39 39 H 1.07999 * 120.00086 * 179.97438 * 6 5 4 40 40 H 1.08003 * 120.00300 * 179.97438 * 7 6 5 41 41 H 1.09002 * 117.52062 * 145.03359 * 11 9 8 42 42 H 1.09004 * 117.49343 * 359.97438 * 11 9 8 43 43 H 0.97003 * 120.00226 * 0.02562 * 16 14 12 44 44 H 1.08998 * 109.46604 * 60.00248 * 17 16 14 45 45 H 1.08988 * 109.46867 * 299.99952 * 17 16 14 46 46 H 0.97001 * 119.99790 * 334.99833 * 20 18 17 47 47 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 48 48 H 1.08990 * 115.54938 * 34.32733 * 29 18 17 49 49 H 1.08993 * 117.50263 * 359.97438 * 30 29 18 50 50 H 1.08997 * 117.50029 * 145.02105 * 30 29 18 51 51 H 1.09005 * 117.49702 * 214.97605 * 31 29 18 52 52 H 1.08997 * 117.50217 * 359.97438 * 31 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3576 2.0390 -1.1932 5 6 2.8229 3.3405 -1.1928 6 6 2.9594 4.0254 0.0004 7 6 2.6302 3.4089 1.1927 8 6 2.1645 2.1072 1.1923 9 6 1.8065 1.4346 2.4926 10 1 1.0716 0.6327 2.4205 11 6 1.7863 2.3010 3.7543 12 6 2.9122 1.2875 3.5397 13 1 3.8987 1.6769 3.2881 14 6 2.9020 0.0453 4.3928 15 8 2.0394 -0.7924 4.2339 16 7 3.8516 -0.1350 5.3321 17 6 3.8420 -1.3430 6.1610 18 6 5.0180 -1.2998 7.1388 19 1 4.8818 -0.4717 7.8344 20 7 6.2656 -1.1121 6.3942 21 6 7.3519 -0.5491 7.0092 22 1 7.2874 -0.2394 8.0418 23 6 8.5359 -0.3767 6.3054 24 7 8.6142 -0.7538 5.0468 25 14 10.0174 0.3920 7.1441 26 1 10.8375 -0.6735 7.7743 27 1 10.8351 1.1164 6.1382 28 1 9.5573 1.3443 8.1865 29 6 5.0819 -2.6151 7.9179 30 6 4.7516 -2.5684 9.4111 31 6 6.1974 -2.7691 8.9536 32 1 -0.3633 0.5140 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.2512 1.5039 -2.1252 38 1 3.0801 3.8222 -2.1245 39 1 3.3234 5.0422 0.0007 40 1 2.7373 3.9438 2.1248 41 1 1.0382 2.0693 4.5124 42 1 2.0323 3.3571 3.6435 43 1 4.5413 0.5351 5.4594 44 1 3.9325 -2.2221 5.5229 45 1 2.9069 -1.3935 6.7186 46 1 6.3234 -1.3904 5.4667 47 1 9.4414 -0.6329 4.5549 48 1 4.7831 -3.5047 7.3636 49 1 4.4892 -1.6007 9.8385 50 1 4.2354 -3.4275 9.8395 51 1 6.6326 -3.7603 9.0809 52 1 6.8860 -1.9336 9.0797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661156688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:07 Heat of formation + Delta-G solvation = 35.378718 kcal Electronic energy + Delta-G solvation = -29404.930884 eV Core-core repulsion = 25563.500203 eV Total energy + Delta-G solvation = -3841.430681 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.35 seconds Orbital eigenvalues (eV) -40.36526 -39.21545 -37.65461 -36.28091 -34.59783 -34.28535 -33.37276 -31.04067 -30.60131 -29.43396 -28.18413 -24.92026 -24.06865 -23.86734 -23.27110 -21.96337 -21.68089 -21.14228 -20.28724 -19.97606 -19.33389 -17.57741 -17.14644 -16.53625 -15.80778 -15.49555 -15.23156 -15.05817 -14.81055 -14.58112 -14.18771 -14.04864 -13.92511 -13.63101 -13.47092 -13.28243 -13.19101 -13.05092 -12.52237 -12.26711 -12.13074 -11.91896 -11.83606 -11.48947 -11.39275 -11.17907 -10.97312 -10.90291 -10.88987 -10.86213 -10.73352 -10.59861 -10.42879 -10.14613 -9.95354 -9.71630 -9.47916 -9.31098 -9.00299 -8.86224 -8.62638 -8.53605 -7.07025 -5.83687 -3.13379 1.20614 1.30155 2.76234 3.37649 3.42277 3.43721 3.45307 3.62496 4.03481 4.39318 4.52149 4.57528 4.66468 4.71327 4.80331 4.88174 4.91845 5.08306 5.10319 5.21769 5.28631 5.30190 5.40938 5.42599 5.46110 5.50277 5.50591 5.58757 5.61225 5.73959 5.77893 5.87817 5.89256 5.91135 5.91888 5.99132 6.01489 6.05904 6.09444 6.16181 6.18789 6.39287 6.41861 6.44612 6.53228 6.59063 6.61951 6.75830 6.90692 6.91775 6.96498 7.62750 7.95365 8.33044 8.58063 9.45300 9.99413 10.35554 11.38048 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.002717 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.152543 B =10303.540006 C =11959.011438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.049 4.049 9 C -0.087 4.087 10 H 0.129 0.871 11 C -0.147 4.147 12 C -0.172 4.172 13 H 0.126 0.874 14 C 0.541 3.459 15 O -0.555 6.555 16 N -0.706 5.706 17 C 0.119 3.881 18 C 0.193 3.807 19 H 0.055 0.945 20 N -0.716 5.716 21 C -0.238 4.238 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.159 4.159 30 C -0.196 4.196 31 C -0.156 4.156 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.411 0.589 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.222 6.489 -7.294 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.049 4.049 9 C -0.105 4.105 10 H 0.146 0.854 11 C -0.184 4.184 12 C -0.194 4.194 13 H 0.144 0.856 14 C 0.326 3.674 15 O -0.434 6.434 16 N -0.357 5.357 17 C -0.005 4.005 18 C 0.083 3.917 19 H 0.073 0.927 20 N -0.357 5.357 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.181 4.181 30 C -0.234 4.234 31 C -0.193 4.193 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.248 0.752 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.677 5.985 -7.298 18.298 hybrid contribution 1.586 0.478 0.194 1.668 sum -14.091 6.463 -7.104 17.052 Atomic orbital electron populations 1.21733 0.94711 1.01802 1.01957 1.20602 0.96221 0.92598 1.03425 1.19727 0.98612 0.96160 0.92376 1.21012 1.00040 0.95168 0.97361 1.21110 1.00022 0.94886 0.98041 1.21082 1.00570 0.99957 0.92519 1.21063 0.99380 0.94591 0.98377 1.18990 0.99337 0.93701 0.92835 1.21113 1.00633 1.01672 0.87077 0.85357 1.23116 0.99469 0.96410 0.99395 1.22367 0.97058 0.97891 1.02038 0.85559 1.19509 0.81310 0.86536 0.80006 1.90651 1.38020 1.45145 1.69630 1.45892 1.30121 1.23739 1.35940 1.21596 0.98714 0.87112 0.93091 1.20052 0.86300 0.93404 0.91975 0.92728 1.42459 1.07939 1.73107 1.12235 1.19149 0.90097 1.32085 0.95555 0.91157 1.24717 0.97911 1.01846 0.96039 1.69662 1.26761 1.52727 1.08437 0.86271 0.83312 0.78811 0.78261 1.21746 1.21832 1.20778 1.23035 1.03786 1.00963 0.90337 1.22945 1.00277 1.01855 0.98327 1.22768 0.91109 1.02665 1.02786 0.92375 0.92854 0.92317 0.91171 0.90069 0.86172 0.86271 0.86165 0.85822 0.87862 0.87578 0.75212 0.91833 0.91704 0.78043 0.93472 0.89156 0.89554 0.90092 0.90227 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.74 37.16 0.36 -1.01 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.07 -0.80 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 7 C -0.12 -1.26 9.30 -39.59 -0.37 -1.63 16 8 C -0.05 -0.58 5.61 -104.63 -0.59 -1.17 16 9 C -0.09 -1.06 4.66 -91.74 -0.43 -1.49 16 10 H 0.13 1.70 5.48 -51.92 -0.28 1.41 16 11 C -0.15 -1.58 9.57 -26.70 -0.26 -1.84 16 12 C -0.17 -2.30 5.82 -91.78 -0.53 -2.84 16 13 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 14 C 0.54 8.85 7.61 -10.99 -0.08 8.76 16 15 O -0.56 -10.52 16.26 5.55 0.09 -10.43 16 16 N -0.71 -11.65 5.39 -60.29 -0.32 -11.97 16 17 C 0.12 2.02 5.22 -4.04 -0.02 2.00 16 18 C 0.19 3.54 2.70 -67.93 -0.18 3.36 16 19 H 0.05 1.01 7.84 -51.93 -0.41 0.61 16 20 N -0.72 -16.20 4.54 -53.42 -0.24 -16.45 16 21 C -0.24 -5.99 8.62 -15.06 -0.13 -6.12 16 22 H 0.07 1.73 6.90 -52.49 -0.36 1.37 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 25 Si 0.90 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 C -0.16 -2.76 5.36 -90.61 -0.49 -3.24 16 30 C -0.20 -2.95 10.17 -26.75 -0.27 -3.22 16 31 C -0.16 -2.75 9.77 -26.75 -0.26 -3.01 16 32 H 0.06 0.58 7.17 -51.93 -0.37 0.20 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.08 1.02 6.95 -51.93 -0.36 0.66 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.12 1.15 6.02 -52.48 -0.32 0.83 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.11 0.94 6.18 -51.93 -0.32 0.62 16 43 H 0.41 6.87 8.14 -40.82 -0.33 6.54 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.03 8.14 -51.94 -0.42 0.61 16 46 H 0.39 9.61 7.80 -40.82 -0.32 9.29 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 49 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 50 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 52 H 0.10 2.06 6.21 -51.93 -0.32 1.74 16 LS Contribution 420.56 15.07 6.34 6.34 Total: -1.00 -29.43 420.56 -12.09 -41.52 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -8.44 Total: 19.65 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -5.21 Total: -19.10 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.16 Total: -54.33 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -29.43 -12.09 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661156688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.895 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.35 seconds