Wall clock time and date at job start Wed Apr 1 2020 03:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47569 * 2 1 4 4 C 1.38261 * 119.99677 * 265.18793 * 3 2 1 5 5 C 1.38210 * 119.99869 * 180.22585 * 4 3 2 6 6 C 1.38259 * 119.99814 * 359.81400 * 5 4 3 7 7 C 1.38206 * 120.00185 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.00241 * 84.99629 * 3 2 1 9 9 C 1.50700 * 120.00134 * 0.02562 * 8 3 2 10 10 H 1.09008 * 115.55811 * 334.03780 * 9 8 3 11 11 C 1.53066 * 117.49815 * 188.32842 * 9 8 3 12 12 C 1.52995 * 117.50112 * 119.72312 * 9 8 3 13 13 H 1.09002 * 117.49846 * 359.97438 * 12 9 8 14 14 C 1.50698 * 117.50381 * 214.98059 * 12 9 8 15 15 O 1.21286 * 119.99809 * 0.09002 * 14 12 9 16 16 N 1.34776 * 120.00053 * 180.08779 * 14 12 9 17 17 C 1.46510 * 119.99685 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46482 * 179.97438 * 17 16 14 19 19 H 1.08999 * 109.47014 * 65.00587 * 18 17 16 20 20 N 1.46499 * 109.47493 * 304.99988 * 18 17 16 21 21 C 1.36939 * 119.99933 * 155.27860 * 20 18 17 22 22 H 1.08001 * 119.99700 * 359.72658 * 21 20 18 23 23 C 1.38810 * 120.00095 * 179.71972 * 21 20 18 24 24 N 1.31624 * 119.99740 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47144 * 90.00258 * 25 23 21 27 27 H 1.48500 * 109.47140 * 210.00775 * 25 23 21 28 28 H 1.48502 * 109.46967 * 330.00206 * 25 23 21 29 29 C 1.53008 * 109.46675 * 185.00168 * 18 17 16 30 30 C 1.53004 * 117.49479 * 248.62858 * 29 18 17 31 31 C 1.52997 * 117.49669 * 180.02562 * 29 18 17 32 32 H 1.09005 * 109.47032 * 300.00634 * 1 2 3 33 33 H 1.08996 * 109.46670 * 59.99933 * 1 2 3 34 34 H 1.08995 * 109.47427 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47167 * 239.99233 * 2 1 3 36 36 H 1.09004 * 109.47015 * 119.99522 * 2 1 3 37 37 H 1.07998 * 120.00172 * 0.02562 * 4 3 2 38 38 H 1.07995 * 120.00020 * 179.79021 * 5 4 3 39 39 H 1.07999 * 120.00086 * 179.97438 * 6 5 4 40 40 H 1.08003 * 120.00300 * 179.97438 * 7 6 5 41 41 H 1.09002 * 117.52062 * 145.03359 * 11 9 8 42 42 H 1.09004 * 117.49343 * 359.97438 * 11 9 8 43 43 H 0.97003 * 120.00226 * 0.02562 * 16 14 12 44 44 H 1.08998 * 109.46604 * 60.00248 * 17 16 14 45 45 H 1.08988 * 109.46867 * 299.99952 * 17 16 14 46 46 H 0.97001 * 119.99790 * 334.99833 * 20 18 17 47 47 H 0.96998 * 119.99409 * 179.97438 * 24 23 21 48 48 H 1.08990 * 115.54938 * 34.32733 * 29 18 17 49 49 H 1.08993 * 117.50263 * 359.97438 * 30 29 18 50 50 H 1.08997 * 117.50029 * 145.02105 * 30 29 18 51 51 H 1.09005 * 117.49702 * 214.97605 * 31 29 18 52 52 H 1.08997 * 117.50217 * 359.97438 * 31 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3576 2.0390 -1.1932 5 6 2.8229 3.3405 -1.1928 6 6 2.9594 4.0254 0.0004 7 6 2.6302 3.4089 1.1927 8 6 2.1645 2.1072 1.1923 9 6 1.8065 1.4346 2.4926 10 1 1.0716 0.6327 2.4205 11 6 1.7863 2.3010 3.7543 12 6 2.9122 1.2875 3.5397 13 1 3.8987 1.6769 3.2881 14 6 2.9020 0.0453 4.3928 15 8 2.0394 -0.7924 4.2339 16 7 3.8516 -0.1350 5.3321 17 6 3.8420 -1.3430 6.1610 18 6 5.0180 -1.2998 7.1388 19 1 4.8818 -0.4717 7.8344 20 7 6.2656 -1.1121 6.3942 21 6 7.3519 -0.5491 7.0092 22 1 7.2874 -0.2394 8.0418 23 6 8.5359 -0.3767 6.3054 24 7 8.6142 -0.7538 5.0468 25 14 10.0174 0.3920 7.1441 26 1 10.8375 -0.6735 7.7743 27 1 10.8351 1.1164 6.1382 28 1 9.5573 1.3443 8.1865 29 6 5.0819 -2.6151 7.9179 30 6 4.7516 -2.5684 9.4111 31 6 6.1974 -2.7691 8.9536 32 1 -0.3633 0.5140 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.2512 1.5039 -2.1252 38 1 3.0801 3.8222 -2.1245 39 1 3.3234 5.0422 0.0007 40 1 2.7373 3.9438 2.1248 41 1 1.0382 2.0693 4.5124 42 1 2.0323 3.3571 3.6435 43 1 4.5413 0.5351 5.4594 44 1 3.9325 -2.2221 5.5229 45 1 2.9069 -1.3935 6.7186 46 1 6.3234 -1.3904 5.4667 47 1 9.4414 -0.6329 4.5549 48 1 4.7831 -3.5047 7.3636 49 1 4.4892 -1.6007 9.8385 50 1 4.2354 -3.4275 9.8395 51 1 6.6326 -3.7603 9.0809 52 1 6.8860 -1.9336 9.0797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661156688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:03 Heat of formation + Delta-G solvation = 21.269275 kcal Electronic energy + Delta-G solvation = -29405.542716 eV Core-core repulsion = 25563.500203 eV Total energy + Delta-G solvation = -3842.042512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.39077 -40.33083 -39.07275 -37.32305 -36.05067 -35.13885 -35.07859 -32.73089 -31.51044 -30.23723 -29.79146 -26.27640 -25.20724 -24.80962 -24.62814 -23.27816 -23.00389 -21.97676 -21.51347 -21.06172 -20.66331 -19.26010 -18.43088 -17.51261 -17.03500 -16.84375 -16.51175 -16.19937 -16.04685 -15.90339 -15.45129 -15.41156 -14.93214 -14.81302 -14.73289 -14.49244 -14.38035 -14.07975 -13.70150 -13.54152 -13.12456 -12.99620 -12.90447 -12.74716 -12.67574 -12.65227 -12.42645 -12.30016 -12.25117 -11.98681 -11.83976 -11.76831 -11.72495 -11.47933 -11.35720 -11.07171 -11.00310 -10.83059 -10.73483 -10.01613 -9.66138 -9.38355 -8.99733 -7.88348 -5.16057 0.38476 0.50758 1.49278 1.50686 1.52381 1.57603 2.21811 2.58009 2.68402 3.07677 3.09272 3.47848 3.57618 3.72164 3.79212 3.85523 3.91589 3.94616 3.99716 4.13337 4.15288 4.19981 4.27462 4.32914 4.35571 4.39461 4.48744 4.56799 4.63053 4.65371 4.67023 4.70037 4.75539 4.85705 4.90060 4.95692 4.97468 5.08885 5.12464 5.15824 5.16653 5.17965 5.26371 5.37122 5.40279 5.46806 5.54002 5.61980 5.63437 5.64727 5.79182 6.14414 6.31009 6.60194 7.24741 7.39365 8.10240 8.35770 9.34445 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.002717 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.152543 B =10303.540006 C =11959.011438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.124 4.124 8 C -0.067 4.067 9 C -0.084 4.084 10 H 0.113 0.887 11 C -0.123 4.123 12 C -0.187 4.187 13 H 0.126 0.874 14 C 0.539 3.461 15 O -0.585 6.585 16 N -0.707 5.707 17 C 0.128 3.872 18 C 0.198 3.802 19 H 0.059 0.941 20 N -0.723 5.723 21 C -0.217 4.217 22 H 0.078 0.922 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.959 3.041 26 H -0.295 1.295 27 H -0.302 1.302 28 H -0.268 1.268 29 C -0.175 4.175 30 C -0.161 4.161 31 C -0.174 4.174 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.411 0.589 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.372 0.628 47 H 0.247 0.753 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.106 0.894 51 H 0.085 0.915 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 7.920 -6.638 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.086 4.086 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.142 4.142 8 C -0.067 4.067 9 C -0.102 4.102 10 H 0.131 0.869 11 C -0.160 4.160 12 C -0.208 4.208 13 H 0.144 0.856 14 C 0.326 3.674 15 O -0.466 6.466 16 N -0.356 5.356 17 C 0.004 3.996 18 C 0.089 3.911 19 H 0.076 0.924 20 N -0.363 5.363 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.790 3.210 26 H -0.223 1.223 27 H -0.229 1.229 28 H -0.193 1.193 29 C -0.196 4.196 30 C -0.198 4.198 31 C -0.212 4.212 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.154 0.846 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.247 0.753 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.204 0.796 47 H 0.056 0.944 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.125 0.875 51 H 0.103 0.897 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.778 7.424 -6.588 19.494 hybrid contribution 1.831 0.002 0.008 1.831 sum -14.947 7.427 -6.581 17.941 Atomic orbital electron populations 1.21694 0.93755 1.02177 1.02076 1.20563 0.97086 0.92458 1.02537 1.19913 0.99270 0.96424 0.92996 1.21267 0.99859 0.95754 0.97571 1.21460 0.99096 0.94663 0.99116 1.21419 1.00056 1.01009 0.92263 1.21290 0.99158 0.94245 0.99508 1.19073 1.00566 0.94444 0.92583 1.21030 0.99476 1.01801 0.87911 0.86866 1.23258 0.97453 0.97052 0.98224 1.22282 0.97936 0.97623 1.02938 0.85576 1.19997 0.80519 0.87101 0.79746 1.90630 1.39154 1.46389 1.70456 1.45909 1.30155 1.23473 1.36098 1.21472 0.98669 0.86845 0.92655 1.20140 0.84840 0.94132 0.91948 0.92352 1.42570 1.08884 1.72931 1.11872 1.19449 0.90355 1.29639 0.95469 0.90467 1.25359 1.00472 1.03737 0.96635 1.69813 1.26793 1.55323 1.09881 0.85347 0.80413 0.77968 0.77291 1.22278 1.22879 1.19296 1.22928 1.04804 1.00133 0.91740 1.23018 0.97682 1.03443 0.95700 1.22725 0.92124 1.02155 1.04152 0.93154 0.91728 0.91823 0.90313 0.92600 0.84596 0.83944 0.83981 0.84433 0.87536 0.85056 0.75297 0.93387 0.90218 0.79623 0.94434 0.88986 0.88497 0.87543 0.89658 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.74 71.98 0.70 -1.95 16 2 C -0.09 -1.97 5.38 29.85 0.16 -1.81 16 3 C -0.09 -1.97 5.13 -19.86 -0.10 -2.07 16 4 C -0.13 -2.50 9.68 22.27 0.22 -2.28 16 5 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 7 C -0.12 -2.51 9.30 22.27 0.21 -2.31 16 8 C -0.07 -1.56 5.61 -19.87 -0.11 -1.67 16 9 C -0.08 -2.06 4.66 -11.52 -0.05 -2.11 16 10 H 0.11 3.12 5.48 -2.38 -0.01 3.11 16 11 C -0.12 -2.50 9.57 30.62 0.29 -2.21 16 12 C -0.19 -4.99 5.82 -11.54 -0.07 -5.06 16 13 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 14 C 0.54 17.91 7.61 87.66 0.67 18.57 16 15 O -0.58 -22.67 16.26 -3.05 -0.05 -22.72 16 16 N -0.71 -23.48 5.39 -463.05 -2.49 -25.97 16 17 C 0.13 4.32 5.22 86.38 0.45 4.77 16 18 C 0.20 7.14 2.70 44.99 0.12 7.26 16 19 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 20 N -0.72 -32.94 4.54 -322.93 -1.47 -34.41 16 21 C -0.22 -10.93 8.62 84.03 0.72 -10.20 16 22 H 0.08 3.74 6.90 -2.91 -0.02 3.72 16 23 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 24 N -0.97 -56.82 13.06 21.65 0.28 -56.54 16 25 Si 0.96 44.34 29.55 68.60 2.03 46.36 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 C -0.17 -5.82 5.36 -10.79 -0.06 -5.87 16 30 C -0.16 -4.37 10.17 30.58 0.31 -4.06 16 31 C -0.17 -5.91 9.77 30.58 0.30 -5.61 16 32 H 0.05 1.02 7.17 -2.38 -0.02 1.00 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 36 H 0.06 1.50 6.95 -2.39 -0.02 1.48 16 37 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.14 2.26 6.02 -2.91 -0.02 2.24 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.13 2.00 6.18 -2.38 -0.01 1.98 16 43 H 0.41 13.83 8.14 -92.71 -0.75 13.07 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.37 19.00 7.80 -92.71 -0.72 18.28 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 49 H 0.10 2.46 8.05 -2.39 -0.02 2.44 16 50 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 52 H 0.08 3.16 6.21 -2.39 -0.01 3.14 16 Total: -1.00 -64.01 420.56 2.43 -61.58 By element: Atomic # 1 Polarization: 56.27 SS G_CDS: -0.54 Total: 55.73 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.67 Total: -24.04 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.68 Total: -116.91 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.01 2.43 -61.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661156688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.847 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds