Wall clock time and date at job start Wed Apr 1 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47410 * 2 1 4 4 C 1.38253 * 120.00279 * 265.18869 * 3 2 1 5 5 C 1.38218 * 120.00211 * 180.23096 * 4 3 2 6 6 C 1.38257 * 119.99673 * 359.81064 * 5 4 3 7 7 C 1.38212 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.38221 * 119.99674 * 85.00035 * 3 2 1 9 9 C 1.50700 * 119.99982 * 359.97438 * 8 3 2 10 10 H 1.08995 * 115.55894 * 334.03746 * 9 8 3 11 11 C 1.53072 * 117.48771 * 188.32729 * 9 8 3 12 12 C 1.52996 * 117.49492 * 119.72867 * 9 8 3 13 13 H 1.08995 * 117.50534 * 359.97438 * 12 9 8 14 14 C 1.50702 * 117.49546 * 214.97490 * 12 9 8 15 15 O 1.21283 * 120.00262 * 0.09172 * 14 12 9 16 16 N 1.34777 * 119.99928 * 179.81078 * 14 12 9 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 12 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.47492 * 295.00479 * 18 17 16 20 20 N 1.46504 * 109.46848 * 55.00180 * 18 17 16 21 21 C 1.36939 * 120.00057 * 204.99992 * 20 18 17 22 22 H 1.07998 * 119.99529 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99778 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00123 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99723 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47233 * 89.99974 * 25 23 21 27 27 H 1.48502 * 109.46958 * 210.00295 * 25 23 21 28 28 H 1.48502 * 109.47229 * 330.00059 * 25 23 21 29 29 C 1.52999 * 109.47469 * 175.00230 * 18 17 16 30 30 C 1.53002 * 117.49810 * 248.62358 * 29 18 17 31 31 C 1.52994 * 60.00177 * 252.50970 * 30 29 18 32 32 H 1.09000 * 109.46908 * 59.99856 * 1 2 3 33 33 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47007 * 300.00102 * 1 2 3 35 35 H 1.09002 * 109.47445 * 240.00188 * 2 1 3 36 36 H 1.09000 * 109.46908 * 120.00144 * 2 1 3 37 37 H 1.07998 * 119.99909 * 0.02562 * 4 3 2 38 38 H 1.08000 * 119.99773 * 179.79103 * 5 4 3 39 39 H 1.08002 * 120.00039 * 179.97438 * 6 5 4 40 40 H 1.07996 * 120.00392 * 179.97438 * 7 6 5 41 41 H 1.09007 * 117.50561 * 145.03698 * 11 9 8 42 42 H 1.08998 * 117.49902 * 0.02562 * 11 9 8 43 43 H 0.97000 * 120.00317 * 0.28382 * 16 14 12 44 44 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 45 45 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 46 46 H 0.97003 * 120.00175 * 25.00060 * 20 18 17 47 47 H 0.97009 * 119.99761 * 180.02562 * 24 23 21 48 48 H 1.08998 * 115.54869 * 34.32637 * 29 18 17 49 49 H 1.08999 * 117.50160 * 0.02562 * 30 29 18 50 50 H 1.09005 * 117.49527 * 145.01488 * 30 29 18 51 51 H 1.08997 * 117.50003 * 252.51738 * 31 30 29 52 52 H 1.08999 * 117.49945 * 107.48780 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1930 5 6 2.8228 3.3406 -1.1926 6 6 2.9594 4.0254 0.0006 7 6 2.6311 3.4085 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8054 1.4347 2.4926 10 1 1.0700 0.6335 2.4202 11 6 1.7854 2.3013 3.7542 12 6 2.9106 1.2870 3.5401 13 1 3.8974 1.6756 3.2890 14 6 2.8991 0.0447 4.3932 15 8 2.0360 -0.7923 4.2340 16 7 3.8514 -0.1389 5.3291 17 6 3.8438 -1.3494 6.1542 18 6 5.0219 -1.3093 7.1295 19 1 5.9573 -1.3468 6.5712 20 7 4.9681 -0.0704 7.9095 21 6 6.1139 0.4476 8.4518 22 1 7.0573 -0.0570 8.3041 23 6 6.0629 1.6213 9.1913 24 7 4.9131 2.2359 9.3717 25 14 7.6260 2.3282 9.9304 26 1 8.2551 3.2597 8.9600 27 1 7.2955 3.0622 11.1784 28 1 8.5700 1.2246 10.2406 29 6 4.9433 -2.5104 8.0741 30 6 4.6275 -2.2328 9.5452 31 6 6.0401 -2.6505 9.1316 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5139 0.8900 37 1 2.2511 1.5040 -2.1251 38 1 3.0800 3.8224 -2.1244 39 1 3.3234 5.0423 0.0010 40 1 2.7382 3.9433 2.1252 41 1 1.0367 2.0700 4.5120 42 1 2.0314 3.3573 3.6434 43 1 4.5418 0.5304 5.4565 44 1 2.9103 -1.4013 6.7145 45 1 3.9319 -2.2266 5.5132 46 1 4.1209 0.3831 8.0419 47 1 4.8775 3.0563 9.8882 48 1 4.5449 -3.4263 7.6376 49 1 4.4754 -1.1945 9.8400 50 1 4.0211 -2.9662 10.0768 51 1 6.3630 -3.6587 9.3911 52 1 6.8176 -1.8870 9.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661156689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:24 Heat of formation + Delta-G solvation = 38.453037 kcal Electronic energy + Delta-G solvation = -29459.422918 eV Core-core repulsion = 25618.125549 eV Total energy + Delta-G solvation = -3841.297369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.37930 -39.23334 -37.71966 -36.27258 -34.42334 -34.32826 -33.25030 -30.99319 -30.59597 -29.47197 -28.27602 -24.93665 -24.06441 -23.90179 -23.38110 -22.12593 -21.46101 -21.16600 -20.27808 -19.84418 -18.97326 -17.55739 -17.14319 -16.57166 -15.82314 -15.55509 -15.28003 -15.07978 -14.73472 -14.55421 -14.31206 -14.01462 -13.90708 -13.64181 -13.48158 -13.30493 -13.19433 -12.89527 -12.58214 -12.28300 -12.04708 -11.96241 -11.82647 -11.50980 -11.31504 -11.18886 -11.00679 -10.92025 -10.89042 -10.86128 -10.61654 -10.53279 -10.40458 -10.14252 -9.73409 -9.63545 -9.44677 -9.17780 -9.00383 -8.90501 -8.62481 -8.56670 -7.09144 -5.86039 -3.16094 1.16372 1.25543 2.77694 3.36336 3.39367 3.43478 3.44479 3.63398 4.05359 4.47762 4.50533 4.62213 4.64003 4.68580 4.81196 4.86632 4.92399 5.03573 5.09149 5.25520 5.26636 5.36528 5.38474 5.39813 5.45449 5.45863 5.56769 5.67473 5.73328 5.74922 5.83854 5.85078 5.89255 5.91456 5.97480 6.00711 6.04620 6.06030 6.08828 6.15140 6.37550 6.37683 6.41605 6.45627 6.58217 6.64236 6.74210 6.87306 6.90729 7.00028 7.26560 7.63367 7.95777 8.31058 8.58499 9.43548 9.97266 10.33628 11.35345 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.002554 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.963538 B =10958.538004 C =12490.435856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.070 4.070 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.047 4.047 9 C -0.090 4.090 10 H 0.129 0.871 11 C -0.142 4.142 12 C -0.172 4.172 13 H 0.123 0.877 14 C 0.540 3.460 15 O -0.555 6.555 16 N -0.706 5.706 17 C 0.119 3.881 18 C 0.192 3.808 19 H 0.057 0.943 20 N -0.717 5.717 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.178 4.178 30 C -0.163 4.163 31 C -0.176 4.176 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.411 0.589 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.386 0.614 47 H 0.255 0.745 48 H 0.085 0.915 49 H 0.118 0.882 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -1.008 -18.312 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.047 4.047 9 C -0.108 4.108 10 H 0.146 0.854 11 C -0.179 4.179 12 C -0.193 4.193 13 H 0.141 0.859 14 C 0.326 3.674 15 O -0.435 6.435 16 N -0.357 5.357 17 C -0.005 4.005 18 C 0.081 3.919 19 H 0.074 0.926 20 N -0.359 5.359 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 C -0.200 4.200 30 C -0.200 4.200 31 C -0.213 4.213 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.248 0.752 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.221 0.779 47 H 0.065 0.935 48 H 0.104 0.896 49 H 0.137 0.863 50 H 0.087 0.913 51 H 0.090 0.910 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.176 -1.561 -18.336 19.411 hybrid contribution 1.095 0.902 0.712 1.588 sum -5.080 -0.659 -17.624 18.353 Atomic orbital electron populations 1.21738 0.94658 1.01831 1.02068 1.20592 0.96319 0.92586 1.03232 1.19729 0.98735 0.96205 0.92373 1.21002 1.00151 0.95195 0.97314 1.21111 1.00150 0.94877 0.98019 1.21098 1.00570 0.99940 0.92495 1.21110 0.99236 0.94588 0.98481 1.19017 0.99159 0.93709 0.92864 1.21134 1.00676 1.01915 0.87089 0.85371 1.23122 0.99370 0.96413 0.99019 1.22321 0.96908 0.98082 1.01982 0.85897 1.19516 0.81292 0.86438 0.80138 1.90650 1.37679 1.45212 1.69921 1.45896 1.30329 1.23650 1.35817 1.21580 1.00087 0.86380 0.92449 1.19988 0.95053 0.86704 0.90128 0.92553 1.42470 1.08669 1.23585 1.61144 1.19157 0.87573 1.04359 1.25975 0.91099 1.24702 0.96562 0.98129 1.01016 1.69656 1.23320 1.19668 1.44883 0.86274 0.82822 0.78987 0.78583 1.21785 1.21872 1.20785 1.23068 1.04663 0.99915 0.92311 1.22899 0.97440 1.03447 0.96182 1.22840 0.93498 1.00801 1.04120 0.92837 0.92317 0.92272 0.91280 0.90137 0.86223 0.86296 0.86139 0.85679 0.87643 0.87496 0.75241 0.91727 0.91908 0.77913 0.93461 0.89646 0.86342 0.91305 0.91030 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.74 37.16 0.36 -0.96 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.07 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.14 9.68 -39.58 -0.38 -1.53 16 5 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 7 C -0.12 -1.23 9.30 -39.58 -0.37 -1.60 16 8 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 9 C -0.09 -1.10 4.66 -91.74 -0.43 -1.52 16 10 H 0.13 1.70 5.47 -51.93 -0.28 1.41 16 11 C -0.14 -1.70 9.57 -26.69 -0.26 -1.96 16 12 C -0.17 -2.29 5.82 -91.77 -0.53 -2.82 16 13 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 14 C 0.54 8.82 7.61 -10.98 -0.08 8.74 16 15 O -0.56 -10.52 16.26 5.55 0.09 -10.43 16 16 N -0.71 -11.59 5.39 -60.29 -0.32 -11.91 16 17 C 0.12 2.01 5.21 -4.04 -0.02 1.99 16 18 C 0.19 3.49 2.86 -67.93 -0.19 3.30 16 19 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 20 N -0.72 -15.72 3.08 -53.43 -0.16 -15.88 16 21 C -0.24 -5.90 8.15 -15.06 -0.12 -6.02 16 22 H 0.07 1.73 6.91 -52.49 -0.36 1.37 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 25 Si 0.90 21.17 29.55 -169.99 -5.02 16.14 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 29 C -0.18 -3.08 5.71 -90.62 -0.52 -3.60 16 30 C -0.16 -3.03 9.74 -26.73 -0.26 -3.29 16 31 C -0.18 -3.12 9.86 -26.73 -0.26 -3.39 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 7.16 -51.93 -0.37 0.21 16 35 H 0.07 0.59 8.05 -51.93 -0.42 0.18 16 36 H 0.08 0.92 6.95 -51.93 -0.36 0.56 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.19 6.02 -52.49 -0.32 0.87 16 41 H 0.11 1.33 8.14 -51.92 -0.42 0.91 16 42 H 0.11 1.09 6.18 -51.93 -0.32 0.77 16 43 H 0.41 6.83 8.14 -40.82 -0.33 6.50 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 48 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 49 H 0.12 2.64 6.68 -51.93 -0.35 2.30 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.10 2.04 6.23 -51.93 -0.32 1.72 16 LS Contribution 417.69 15.07 6.29 6.29 Total: -1.00 -28.32 417.69 -12.02 -40.34 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -8.38 Total: 20.18 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -5.23 Total: -19.52 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.01 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -28.32 -12.02 -40.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661156689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.792 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds