Wall clock time and date at job start Wed Apr 1 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47410 * 2 1 4 4 C 1.38253 * 120.00279 * 265.18869 * 3 2 1 5 5 C 1.38218 * 120.00211 * 180.23096 * 4 3 2 6 6 C 1.38257 * 119.99673 * 359.81064 * 5 4 3 7 7 C 1.38212 * 120.00276 * 0.02562 * 6 5 4 8 8 C 1.38221 * 119.99674 * 85.00035 * 3 2 1 9 9 C 1.50700 * 119.99982 * 359.97438 * 8 3 2 10 10 H 1.08995 * 115.55894 * 334.03746 * 9 8 3 11 11 C 1.53072 * 117.48771 * 188.32729 * 9 8 3 12 12 C 1.52996 * 117.49492 * 119.72867 * 9 8 3 13 13 H 1.08995 * 117.50534 * 359.97438 * 12 9 8 14 14 C 1.50702 * 117.49546 * 214.97490 * 12 9 8 15 15 O 1.21283 * 120.00262 * 0.09172 * 14 12 9 16 16 N 1.34777 * 119.99928 * 179.81078 * 14 12 9 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 12 18 18 C 1.52997 * 109.47555 * 180.02562 * 17 16 14 19 19 H 1.08997 * 109.47492 * 295.00479 * 18 17 16 20 20 N 1.46504 * 109.46848 * 55.00180 * 18 17 16 21 21 C 1.36939 * 120.00057 * 204.99992 * 20 18 17 22 22 H 1.07998 * 119.99529 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99778 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00123 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99723 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47233 * 89.99974 * 25 23 21 27 27 H 1.48502 * 109.46958 * 210.00295 * 25 23 21 28 28 H 1.48502 * 109.47229 * 330.00059 * 25 23 21 29 29 C 1.52999 * 109.47469 * 175.00230 * 18 17 16 30 30 C 1.53002 * 117.49810 * 248.62358 * 29 18 17 31 31 C 1.52994 * 60.00177 * 252.50970 * 30 29 18 32 32 H 1.09000 * 109.46908 * 59.99856 * 1 2 3 33 33 H 1.08993 * 109.47384 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47007 * 300.00102 * 1 2 3 35 35 H 1.09002 * 109.47445 * 240.00188 * 2 1 3 36 36 H 1.09000 * 109.46908 * 120.00144 * 2 1 3 37 37 H 1.07998 * 119.99909 * 0.02562 * 4 3 2 38 38 H 1.08000 * 119.99773 * 179.79103 * 5 4 3 39 39 H 1.08002 * 120.00039 * 179.97438 * 6 5 4 40 40 H 1.07996 * 120.00392 * 179.97438 * 7 6 5 41 41 H 1.09007 * 117.50561 * 145.03698 * 11 9 8 42 42 H 1.08998 * 117.49902 * 0.02562 * 11 9 8 43 43 H 0.97000 * 120.00317 * 0.28382 * 16 14 12 44 44 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 45 45 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 46 46 H 0.97003 * 120.00175 * 25.00060 * 20 18 17 47 47 H 0.97009 * 119.99761 * 180.02562 * 24 23 21 48 48 H 1.08998 * 115.54869 * 34.32637 * 29 18 17 49 49 H 1.08999 * 117.50160 * 0.02562 * 30 29 18 50 50 H 1.09005 * 117.49527 * 145.01488 * 30 29 18 51 51 H 1.08997 * 117.50003 * 252.51738 * 31 30 29 52 52 H 1.08999 * 117.49945 * 107.48780 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1930 5 6 2.8228 3.3406 -1.1926 6 6 2.9594 4.0254 0.0006 7 6 2.6311 3.4085 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8054 1.4347 2.4926 10 1 1.0700 0.6335 2.4202 11 6 1.7854 2.3013 3.7542 12 6 2.9106 1.2870 3.5401 13 1 3.8974 1.6756 3.2890 14 6 2.8991 0.0447 4.3932 15 8 2.0360 -0.7923 4.2340 16 7 3.8514 -0.1389 5.3291 17 6 3.8438 -1.3494 6.1542 18 6 5.0219 -1.3093 7.1295 19 1 5.9573 -1.3468 6.5712 20 7 4.9681 -0.0704 7.9095 21 6 6.1139 0.4476 8.4518 22 1 7.0573 -0.0570 8.3041 23 6 6.0629 1.6213 9.1913 24 7 4.9131 2.2359 9.3717 25 14 7.6260 2.3282 9.9304 26 1 8.2551 3.2597 8.9600 27 1 7.2955 3.0622 11.1784 28 1 8.5700 1.2246 10.2406 29 6 4.9433 -2.5104 8.0741 30 6 4.6275 -2.2328 9.5452 31 6 6.0401 -2.6505 9.1316 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5139 0.8900 37 1 2.2511 1.5040 -2.1251 38 1 3.0800 3.8224 -2.1244 39 1 3.3234 5.0423 0.0010 40 1 2.7382 3.9433 2.1252 41 1 1.0367 2.0700 4.5120 42 1 2.0314 3.3573 3.6434 43 1 4.5418 0.5304 5.4565 44 1 2.9103 -1.4013 6.7145 45 1 3.9319 -2.2266 5.5132 46 1 4.1209 0.3831 8.0419 47 1 4.8775 3.0563 9.8882 48 1 4.5449 -3.4263 7.6376 49 1 4.4754 -1.1945 9.8400 50 1 4.0211 -2.9662 10.0768 51 1 6.3630 -3.6587 9.3911 52 1 6.8176 -1.8870 9.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661156689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:16 Heat of formation + Delta-G solvation = 25.797977 kcal Electronic energy + Delta-G solvation = -29459.971683 eV Core-core repulsion = 25618.125549 eV Total energy + Delta-G solvation = -3841.846133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 8.63 seconds Orbital eigenvalues (eV) -41.39425 -40.33938 -39.19122 -37.32904 -35.86116 -35.08375 -35.03813 -32.62289 -31.50233 -30.23582 -29.87420 -26.26331 -25.26861 -24.87279 -24.64064 -23.48615 -22.89657 -21.96504 -21.37859 -20.95091 -20.41320 -19.23736 -18.43778 -17.53516 -17.03294 -16.83391 -16.47842 -16.33449 -16.04696 -15.88533 -15.54044 -15.34302 -14.96918 -14.74228 -14.58493 -14.50214 -14.36733 -14.07798 -13.73231 -13.52226 -13.13140 -12.95024 -12.86303 -12.73436 -12.66476 -12.66005 -12.58637 -12.28735 -12.12549 -11.95232 -11.82777 -11.77024 -11.58939 -11.47187 -11.35349 -11.05259 -11.01513 -10.77362 -10.61393 -10.00645 -9.66025 -9.38515 -8.98535 -7.87591 -5.15044 0.38368 0.50954 1.49204 1.51315 1.52181 1.57375 2.20803 2.58878 2.69466 3.10352 3.13467 3.46682 3.56241 3.72111 3.83953 3.88662 3.92050 3.94643 4.00535 4.12967 4.14596 4.26618 4.28502 4.33701 4.34337 4.49832 4.50548 4.58744 4.63703 4.65547 4.66556 4.70637 4.76285 4.93009 4.94228 4.96608 4.97789 5.09889 5.13334 5.17603 5.18368 5.25159 5.26974 5.38634 5.42543 5.55839 5.64085 5.65632 5.67006 5.68518 5.79813 6.14542 6.32321 6.60528 7.24955 7.41002 8.11305 8.37184 9.34668 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.002554 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.963538 B =10958.538004 C =12490.435856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.129 4.129 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.077 4.077 10 H 0.114 0.886 11 C -0.137 4.137 12 C -0.181 4.181 13 H 0.135 0.865 14 C 0.538 3.462 15 O -0.584 6.584 16 N -0.706 5.706 17 C 0.128 3.872 18 C 0.193 3.807 19 H 0.060 0.940 20 N -0.719 5.719 21 C -0.218 4.218 22 H 0.075 0.925 23 C -0.065 4.065 24 N -0.963 5.963 25 Si 0.956 3.044 26 H -0.290 1.290 27 H -0.305 1.305 28 H -0.274 1.274 29 C -0.169 4.169 30 C -0.173 4.173 31 C -0.170 4.170 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.411 0.589 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.374 0.626 47 H 0.247 0.753 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.090 0.910 51 H 0.101 0.899 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -1.505 -20.237 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.147 4.147 7 C -0.144 4.144 8 C -0.065 4.065 9 C -0.095 4.095 10 H 0.132 0.868 11 C -0.174 4.174 12 C -0.201 4.201 13 H 0.152 0.848 14 C 0.326 3.674 15 O -0.466 6.466 16 N -0.356 5.356 17 C 0.004 3.996 18 C 0.084 3.916 19 H 0.077 0.923 20 N -0.359 5.359 21 C -0.350 4.350 22 H 0.093 0.907 23 C -0.258 4.258 24 N -0.614 5.614 25 Si 0.787 3.213 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.199 1.199 29 C -0.190 4.190 30 C -0.210 4.210 31 C -0.207 4.207 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.145 0.855 43 H 0.247 0.753 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.207 0.793 47 H 0.056 0.944 48 H 0.133 0.867 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.120 0.880 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.318 -2.095 -20.281 21.071 hybrid contribution 0.826 0.982 1.241 1.785 sum -4.492 -1.113 -19.040 19.595 Atomic orbital electron populations 1.21711 0.94176 1.02174 1.01914 1.20562 0.96741 0.92361 1.02821 1.19901 0.99118 0.96526 0.92768 1.21274 0.99673 0.95654 0.97576 1.21463 0.99037 0.94690 0.98952 1.21399 1.00150 1.00908 0.92255 1.21271 0.99341 0.94348 0.99415 1.19035 1.00627 0.94369 0.92505 1.21015 0.99422 1.01411 0.87701 0.86818 1.23207 0.98230 0.97245 0.98722 1.22299 0.98031 0.97258 1.02554 0.84769 1.19987 0.80494 0.86973 0.79948 1.90629 1.38694 1.46466 1.70797 1.45907 1.30405 1.23513 1.35775 1.21460 0.98653 0.87241 0.92266 1.20109 0.95737 0.85614 0.90114 0.92253 1.42512 1.07344 1.24746 1.61335 1.19395 0.88323 1.03364 1.23891 0.90705 1.25287 0.98569 0.99234 1.02687 1.69794 1.24958 1.20052 1.46565 0.85401 0.80362 0.78288 0.77255 1.21736 1.23213 1.19923 1.23059 1.04261 1.00275 0.91436 1.22759 0.98907 1.01756 0.97565 1.22830 0.92328 1.01605 1.03920 0.91777 0.91747 0.93555 0.89853 0.92290 0.84297 0.83837 0.84192 0.85051 0.88624 0.85486 0.75302 0.93128 0.90370 0.79331 0.94411 0.86748 0.90415 0.89134 0.88049 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.74 71.98 0.70 -1.83 16 2 C -0.09 -1.70 5.38 29.85 0.16 -1.54 16 3 C -0.08 -1.72 5.13 -19.86 -0.10 -1.82 16 4 C -0.12 -2.13 9.68 22.27 0.22 -1.91 16 5 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 6 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 7 C -0.13 -2.50 9.30 22.27 0.21 -2.29 16 8 C -0.07 -1.46 5.61 -19.86 -0.11 -1.57 16 9 C -0.08 -1.90 4.66 -11.52 -0.05 -1.96 16 10 H 0.11 3.14 5.47 -2.39 -0.01 3.13 16 11 C -0.14 -3.29 9.57 30.62 0.29 -2.99 16 12 C -0.18 -4.83 5.82 -11.54 -0.07 -4.89 16 13 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 14 C 0.54 17.80 7.61 87.66 0.67 18.47 16 15 O -0.58 -22.55 16.26 -3.04 -0.05 -22.60 16 16 N -0.71 -23.21 5.39 -463.06 -2.49 -25.71 16 17 C 0.13 4.25 5.21 86.38 0.45 4.70 16 18 C 0.19 6.87 2.86 44.99 0.13 7.00 16 19 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 20 N -0.72 -31.75 3.08 -322.94 -0.99 -32.75 16 21 C -0.22 -10.74 8.15 84.03 0.69 -10.06 16 22 H 0.08 3.61 6.91 -2.91 -0.02 3.59 16 23 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.96 -55.22 13.06 21.65 0.28 -54.94 16 25 Si 0.96 43.99 29.55 68.60 2.03 46.01 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C -0.17 -5.54 5.71 -10.79 -0.06 -5.60 16 30 C -0.17 -6.27 9.74 30.59 0.30 -5.97 16 31 C -0.17 -5.71 9.86 30.59 0.30 -5.41 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.93 7.16 -2.39 -0.02 0.91 16 35 H 0.08 1.33 8.05 -2.39 -0.02 1.32 16 36 H 0.06 1.39 6.95 -2.39 -0.02 1.37 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.13 2.32 6.02 -2.91 -0.02 2.31 16 41 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 42 H 0.13 2.50 6.18 -2.39 -0.01 2.48 16 43 H 0.41 13.68 8.14 -92.71 -0.75 12.92 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.37 18.52 7.80 -92.71 -0.72 17.80 16 47 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 48 H 0.11 3.16 8.11 -2.39 -0.02 3.14 16 49 H 0.08 3.52 6.68 -2.39 -0.02 3.51 16 50 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 51 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 52 H 0.08 3.04 6.23 -2.39 -0.01 3.02 16 Total: -1.00 -61.55 417.69 2.86 -58.69 By element: Atomic # 1 Polarization: 56.17 SS G_CDS: -0.54 Total: 55.63 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.63 Total: -24.34 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -3.21 Total: -113.40 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -61.55 2.86 -58.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661156689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.492 kcal (2) G-P(sol) polarization free energy of solvation -61.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.63 seconds