Wall clock time and date at job start Wed Apr 1 2020 02:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 110.91915 * 2 1 4 4 N 1.46506 * 109.46729 * 62.45103 * 3 2 1 5 5 C 1.36936 * 119.99887 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99871 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99859 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47483 * 89.99820 * 9 7 5 11 11 H 1.48506 * 109.47074 * 209.99781 * 9 7 5 12 12 H 1.48492 * 109.47341 * 329.99547 * 9 7 5 13 13 C 1.55156 * 111.00520 * 123.90836 * 2 1 3 14 14 C 1.54316 * 102.94559 * 82.56951 * 13 2 1 15 15 N 1.47023 * 107.27276 * 22.19474 * 14 13 2 16 16 C 1.34777 * 125.65037 * 181.01937 * 15 14 13 17 17 O 1.21283 * 119.99750 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99928 * 0.30479 * 16 15 14 19 19 C 1.50700 * 109.46869 * 179.72354 * 18 16 15 20 20 C 1.38257 * 120.00072 * 89.99977 * 19 18 16 21 21 C 1.38211 * 119.99643 * 179.97438 * 20 19 18 22 22 C 1.38254 * 120.00257 * 0.02562 * 21 20 19 23 23 C 1.38211 * 120.00048 * 359.97438 * 22 21 20 24 24 C 1.50705 * 119.99840 * 180.02562 * 23 22 21 25 25 C 1.52995 * 117.50087 * 8.75030 * 24 23 22 26 26 C 1.52993 * 117.49782 * 300.08717 * 24 23 22 27 27 C 1.38213 * 119.99762 * 269.71977 * 19 18 16 28 28 C 1.47423 * 108.69861 * 1.28833 * 15 14 13 29 29 H 1.08994 * 109.46949 * 297.54888 * 1 2 3 30 30 H 1.09005 * 109.47129 * 57.55289 * 1 2 3 31 31 H 1.09000 * 109.47070 * 177.54834 * 1 2 3 32 32 H 1.09002 * 109.47402 * 182.44646 * 3 2 1 33 33 H 1.08997 * 109.47060 * 302.45255 * 3 2 1 34 34 H 0.97006 * 119.99905 * 359.97438 * 4 3 2 35 35 H 0.96998 * 119.99632 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71752 * 324.20646 * 13 2 1 37 37 H 1.09001 * 110.72046 * 200.94145 * 13 2 1 38 38 H 1.08997 * 109.88569 * 262.77576 * 14 13 2 39 39 H 1.09005 * 110.00889 * 141.68485 * 14 13 2 40 40 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 41 41 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 42 42 H 1.08002 * 119.99895 * 359.97438 * 20 19 18 43 43 H 1.08002 * 119.99611 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.99857 * 180.02562 * 22 21 20 45 45 H 1.09005 * 115.54663 * 154.42189 * 24 23 22 46 46 H 1.09001 * 117.49967 * 359.97438 * 25 24 23 47 47 H 1.08997 * 117.50103 * 145.02064 * 25 24 23 48 48 H 1.09002 * 117.50165 * 214.97927 * 26 24 23 49 49 H 1.09000 * 117.50381 * 359.97438 * 26 24 23 50 50 H 1.08000 * 119.99831 * 0.02562 * 27 19 18 51 51 H 1.09004 * 110.36778 * 94.48512 * 28 15 14 52 52 H 1.09006 * 110.36423 * 216.80164 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 7 1.6538 2.1133 1.2247 5 6 2.0259 3.4124 1.4464 6 1 2.6312 3.9324 0.7185 7 6 1.6253 4.0608 2.6065 8 7 1.9834 5.3093 2.8198 9 14 0.5791 3.1611 3.8656 10 1 1.4615 2.4804 4.8469 11 1 -0.2901 4.1349 4.5737 12 1 -0.2661 2.1527 3.1771 13 6 2.0861 -0.8080 1.2021 14 6 2.0285 -2.2647 0.6959 15 7 2.0138 -2.2159 -0.7735 16 6 1.9471 -3.2828 -1.5942 17 8 1.9420 -3.1236 -2.7965 18 6 1.8725 -4.6733 -1.0179 19 6 1.8001 -5.6783 -2.1386 20 6 2.9622 -6.2094 -2.6669 21 6 2.8957 -7.1314 -3.6944 22 6 1.6673 -7.5223 -4.1941 23 6 0.5057 -6.9914 -3.6658 24 6 -0.8333 -7.4180 -4.2102 25 6 -0.8546 -8.5854 -5.1989 26 6 -1.1082 -7.1588 -5.6927 27 6 0.5719 -6.0734 -2.6342 28 6 2.0908 -0.8069 -1.2004 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8673 31 1 -0.3633 -1.0267 -0.0440 32 1 3.1650 1.4020 -0.0439 33 1 1.6909 1.9654 -0.8672 34 1 1.1099 1.6463 1.8782 35 1 1.7037 5.7622 3.6306 36 1 1.4523 -0.6794 2.0796 37 1 3.1133 -0.5161 1.4209 38 1 1.1218 -2.7480 1.0598 39 1 2.9049 -2.8140 1.0399 40 1 2.7601 -4.8648 -0.4149 41 1 0.9833 -4.7606 -0.3936 42 1 3.9217 -5.9037 -2.2768 43 1 3.8034 -7.5466 -4.1068 44 1 1.6154 -8.2432 -4.9967 45 1 -1.6718 -7.3280 -3.5195 46 1 0.0999 -9.0446 -5.4560 47 1 -1.7073 -9.2632 -5.1591 48 1 -2.1277 -6.8988 -5.9777 49 1 -0.3208 -6.6794 -6.2744 50 1 -0.3359 -5.6616 -2.2186 51 1 3.1253 -0.5266 -1.3988 52 1 1.4764 -0.6448 -2.0861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671764098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:18 Heat of formation + Delta-G solvation = 24.501521 kcal Electronic energy + Delta-G solvation = -29182.412421 eV Core-core repulsion = 25340.510069 eV Total energy + Delta-G solvation = -3841.902352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.55555 -39.79926 -38.19771 -37.00351 -35.00647 -33.07958 -32.49846 -31.03882 -30.71475 -29.61353 -28.27261 -26.67602 -25.47039 -24.06097 -23.15762 -22.84180 -22.30837 -22.00868 -20.24493 -19.32391 -18.80605 -17.73411 -17.22911 -16.95364 -16.39535 -16.04234 -15.57134 -15.12716 -14.81453 -14.61821 -14.35080 -14.15737 -14.09856 -13.89050 -13.50965 -13.36106 -13.10873 -12.83439 -12.66781 -12.50904 -12.47403 -12.26756 -12.20165 -11.95787 -11.81828 -11.60038 -11.45396 -11.42886 -11.22754 -10.97058 -10.92326 -10.71184 -10.61547 -10.49204 -10.41309 -10.10734 -9.92279 -9.59942 -8.97990 -8.92905 -8.72529 -8.66774 -7.25439 -5.78948 -3.14412 1.07505 1.17421 2.56090 2.88991 3.32670 3.32894 3.34596 3.41976 3.75888 4.16869 4.34578 4.41226 4.53167 4.55778 4.59417 4.60543 4.67637 4.73866 4.80771 4.84878 4.90967 5.03042 5.12290 5.17442 5.21862 5.27050 5.28288 5.39180 5.40508 5.48871 5.52251 5.57403 5.66661 5.67371 5.71671 5.77676 5.80902 5.84035 5.87453 5.92325 6.10242 6.12184 6.23255 6.24817 6.32361 6.34358 6.38286 6.43275 6.61487 6.69316 6.77292 7.45858 7.97315 8.09901 8.39973 9.18920 9.90911 10.10917 11.39545 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.001915 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.443163 B =14619.502911 C =14882.324581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C 0.174 3.826 4 N -0.752 5.752 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.120 4.120 14 C 0.100 3.900 15 N -0.616 5.616 16 C 0.528 3.472 17 O -0.534 6.534 18 C -0.098 4.098 19 C -0.059 4.059 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.051 4.051 24 C -0.118 4.118 25 C -0.178 4.178 26 C -0.169 4.169 27 C -0.098 4.098 28 C 0.119 3.881 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.119 0.881 51 H 0.071 0.929 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -30.353 -10.802 32.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 C 0.046 3.954 4 N -0.398 5.398 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.158 4.158 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.317 3.683 17 O -0.410 6.410 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.127 4.127 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.051 4.051 24 C -0.136 4.136 25 C -0.214 4.214 26 C -0.206 4.206 27 C -0.116 4.116 28 C -0.004 4.004 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.137 0.863 51 H 0.090 0.910 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.606 -30.109 -11.535 32.348 hybrid contribution -0.733 -0.386 1.149 1.417 sum -3.339 -30.494 -10.385 32.387 Atomic orbital electron populations 1.21679 0.93474 1.00743 1.02822 1.22041 0.96320 0.96183 0.93863 1.20527 0.96706 0.87829 0.90338 1.42653 1.63775 1.12749 1.20581 1.19058 1.27123 0.86998 1.04094 0.89204 1.24667 1.00552 0.95915 0.98022 1.69701 1.50280 1.10602 1.27586 0.86574 0.80701 0.79089 0.82295 1.21057 1.21745 1.20401 1.22709 1.03042 0.91887 0.98172 1.22120 1.01323 0.99037 0.79842 1.48522 1.72929 1.06539 1.07078 1.20119 0.76542 0.85350 0.86314 1.90735 1.49787 1.86052 1.14459 1.20656 1.05162 0.90654 0.97335 1.19243 0.93468 0.96330 0.96941 1.20966 0.97645 0.97112 0.96986 1.21043 0.97529 0.97864 0.96827 1.20991 0.92067 1.00605 1.00437 1.19041 0.93129 0.96867 0.96053 1.21032 0.96135 1.03575 0.92857 1.23075 1.03437 0.91334 1.03594 1.23043 1.03049 0.98893 0.95593 1.20738 0.97109 0.97095 0.96674 1.22317 1.01261 0.79180 0.97632 0.91822 0.92259 0.93383 0.95143 0.95141 0.80593 0.93065 0.89947 0.89735 0.91531 0.91419 0.87990 0.88051 0.86244 0.86040 0.86168 0.87003 0.88385 0.88465 0.88412 0.88480 0.86277 0.91048 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.41 37.16 0.31 -1.53 16 2 C -0.08 -1.18 0.62 -152.24 -0.09 -1.28 16 3 C 0.17 3.17 5.23 -4.04 -0.02 3.15 16 4 N -0.75 -16.95 4.98 -59.90 -0.30 -17.25 16 5 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 9 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 13 C -0.12 -1.50 5.38 -24.90 -0.13 -1.64 16 14 C 0.10 0.99 6.15 -3.07 -0.02 0.97 16 15 N -0.62 -7.46 3.31 -170.38 -0.56 -8.02 16 16 C 0.53 6.77 7.84 -10.98 -0.09 6.68 16 17 O -0.53 -8.98 16.29 5.55 0.09 -8.89 16 18 C -0.10 -0.90 5.02 -29.03 -0.15 -1.04 16 19 C -0.06 -0.62 4.37 -104.62 -0.46 -1.08 16 20 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 21 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 22 C -0.12 -1.12 9.30 -39.59 -0.37 -1.49 16 23 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 24 C -0.12 -0.94 6.04 -91.77 -0.55 -1.49 16 25 C -0.18 -1.13 9.86 -26.70 -0.26 -1.39 16 26 C -0.17 -1.23 10.17 -26.70 -0.27 -1.50 16 27 C -0.10 -1.02 9.39 -39.58 -0.37 -1.39 16 28 C 0.12 1.60 5.85 -2.41 -0.01 1.59 16 29 H 0.06 0.99 7.19 -51.93 -0.37 0.62 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.60 7.89 -51.93 -0.41 0.19 16 32 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.36 7.86 4.23 -40.82 -0.17 7.69 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 37 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.87 6.02 -52.48 -0.32 0.55 16 45 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.57 6.18 -51.93 -0.32 0.25 16 47 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 51 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 52 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 415.41 15.07 6.26 6.26 Total: -1.00 -33.67 415.41 -11.32 -44.99 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.75 Total: 6.63 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -4.11 Total: -12.29 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.09 Total: -53.49 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.67 -11.32 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671764098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.493 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds