Wall clock time and date at job start Wed Apr 1 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 110.91915 * 2 1 4 4 N 1.46506 * 109.46729 * 62.45103 * 3 2 1 5 5 C 1.36936 * 119.99887 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99871 * 179.97438 * 5 4 3 8 8 N 1.31623 * 119.99859 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99934 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47483 * 89.99820 * 9 7 5 11 11 H 1.48506 * 109.47074 * 209.99781 * 9 7 5 12 12 H 1.48492 * 109.47341 * 329.99547 * 9 7 5 13 13 C 1.55156 * 111.00520 * 123.90836 * 2 1 3 14 14 C 1.54316 * 102.94559 * 82.56951 * 13 2 1 15 15 N 1.47023 * 107.27276 * 22.19474 * 14 13 2 16 16 C 1.34777 * 125.65037 * 181.01937 * 15 14 13 17 17 O 1.21283 * 119.99750 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99928 * 0.30479 * 16 15 14 19 19 C 1.50700 * 109.46869 * 179.72354 * 18 16 15 20 20 C 1.38257 * 120.00072 * 89.99977 * 19 18 16 21 21 C 1.38211 * 119.99643 * 179.97438 * 20 19 18 22 22 C 1.38254 * 120.00257 * 0.02562 * 21 20 19 23 23 C 1.38211 * 120.00048 * 359.97438 * 22 21 20 24 24 C 1.50705 * 119.99840 * 180.02562 * 23 22 21 25 25 C 1.52995 * 117.50087 * 8.75030 * 24 23 22 26 26 C 1.52993 * 117.49782 * 300.08717 * 24 23 22 27 27 C 1.38213 * 119.99762 * 269.71977 * 19 18 16 28 28 C 1.47423 * 108.69861 * 1.28833 * 15 14 13 29 29 H 1.08994 * 109.46949 * 297.54888 * 1 2 3 30 30 H 1.09005 * 109.47129 * 57.55289 * 1 2 3 31 31 H 1.09000 * 109.47070 * 177.54834 * 1 2 3 32 32 H 1.09002 * 109.47402 * 182.44646 * 3 2 1 33 33 H 1.08997 * 109.47060 * 302.45255 * 3 2 1 34 34 H 0.97006 * 119.99905 * 359.97438 * 4 3 2 35 35 H 0.96998 * 119.99632 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.71752 * 324.20646 * 13 2 1 37 37 H 1.09001 * 110.72046 * 200.94145 * 13 2 1 38 38 H 1.08997 * 109.88569 * 262.77576 * 14 13 2 39 39 H 1.09005 * 110.00889 * 141.68485 * 14 13 2 40 40 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 41 41 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 42 42 H 1.08002 * 119.99895 * 359.97438 * 20 19 18 43 43 H 1.08002 * 119.99611 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.99857 * 180.02562 * 22 21 20 45 45 H 1.09005 * 115.54663 * 154.42189 * 24 23 22 46 46 H 1.09001 * 117.49967 * 359.97438 * 25 24 23 47 47 H 1.08997 * 117.50103 * 145.02064 * 25 24 23 48 48 H 1.09002 * 117.50165 * 214.97927 * 26 24 23 49 49 H 1.09000 * 117.50381 * 359.97438 * 26 24 23 50 50 H 1.08000 * 119.99831 * 0.02562 * 27 19 18 51 51 H 1.09004 * 110.36778 * 94.48512 * 28 15 14 52 52 H 1.09006 * 110.36423 * 216.80164 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 7 1.6538 2.1133 1.2247 5 6 2.0259 3.4124 1.4464 6 1 2.6312 3.9324 0.7185 7 6 1.6253 4.0608 2.6065 8 7 1.9834 5.3093 2.8198 9 14 0.5791 3.1611 3.8656 10 1 1.4615 2.4804 4.8469 11 1 -0.2901 4.1349 4.5737 12 1 -0.2661 2.1527 3.1771 13 6 2.0861 -0.8080 1.2021 14 6 2.0285 -2.2647 0.6959 15 7 2.0138 -2.2159 -0.7735 16 6 1.9471 -3.2828 -1.5942 17 8 1.9420 -3.1236 -2.7965 18 6 1.8725 -4.6733 -1.0179 19 6 1.8001 -5.6783 -2.1386 20 6 2.9622 -6.2094 -2.6669 21 6 2.8957 -7.1314 -3.6944 22 6 1.6673 -7.5223 -4.1941 23 6 0.5057 -6.9914 -3.6658 24 6 -0.8333 -7.4180 -4.2102 25 6 -0.8546 -8.5854 -5.1989 26 6 -1.1082 -7.1588 -5.6927 27 6 0.5719 -6.0734 -2.6342 28 6 2.0908 -0.8069 -1.2004 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8673 31 1 -0.3633 -1.0267 -0.0440 32 1 3.1650 1.4020 -0.0439 33 1 1.6909 1.9654 -0.8672 34 1 1.1099 1.6463 1.8782 35 1 1.7037 5.7622 3.6306 36 1 1.4523 -0.6794 2.0796 37 1 3.1133 -0.5161 1.4209 38 1 1.1218 -2.7480 1.0598 39 1 2.9049 -2.8140 1.0399 40 1 2.7601 -4.8648 -0.4149 41 1 0.9833 -4.7606 -0.3936 42 1 3.9217 -5.9037 -2.2768 43 1 3.8034 -7.5466 -4.1068 44 1 1.6154 -8.2432 -4.9967 45 1 -1.6718 -7.3280 -3.5195 46 1 0.0999 -9.0446 -5.4560 47 1 -1.7073 -9.2632 -5.1591 48 1 -2.1277 -6.8988 -5.9777 49 1 -0.3208 -6.6794 -6.2744 50 1 -0.3359 -5.6616 -2.2186 51 1 3.1253 -0.5266 -1.3988 52 1 1.4764 -0.6448 -2.0861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671764098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:17 Heat of formation + Delta-G solvation = 6.438021 kcal Electronic energy + Delta-G solvation = -29183.195713 eV Core-core repulsion = 25340.510069 eV Total energy + Delta-G solvation = -3842.685644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.47741 -40.56624 -39.24716 -37.64949 -36.59565 -34.41960 -33.56446 -32.49165 -31.68802 -30.61144 -29.13559 -27.96558 -26.86428 -24.72929 -24.14459 -23.90377 -23.41109 -22.86025 -20.98881 -20.53768 -19.88343 -19.45085 -18.00268 -17.86232 -17.30523 -16.83013 -16.58568 -16.35205 -15.91551 -15.73176 -15.43023 -15.22948 -15.21485 -14.97908 -14.83779 -14.34800 -14.13156 -14.01651 -13.89503 -13.50828 -13.34083 -13.30786 -13.14632 -13.02682 -12.91983 -12.80118 -12.60814 -12.48484 -12.17426 -12.04887 -11.93700 -11.85205 -11.65133 -11.61126 -11.56232 -11.48336 -11.25538 -10.97677 -10.94874 -9.68637 -9.64367 -9.39374 -9.27806 -8.00695 -5.34299 0.37832 0.47779 1.38221 1.43448 1.50626 1.62445 1.97687 2.50394 2.68718 3.13747 3.27988 3.30747 3.56310 3.57948 3.70902 3.76280 3.89443 3.98295 4.00712 4.05911 4.14310 4.16410 4.21402 4.23415 4.27649 4.33781 4.40549 4.49777 4.58881 4.63481 4.71209 4.75688 4.78344 4.80084 4.84973 4.95524 4.96581 5.03198 5.06337 5.09934 5.13731 5.14970 5.19008 5.23055 5.25422 5.29202 5.41932 5.56449 5.65227 5.69930 5.77250 6.10858 6.22540 6.53661 7.09942 7.14905 7.84671 8.06448 9.20969 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.001915 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.443163 B =14619.502911 C =14882.324581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C 0.171 3.829 4 N -0.748 5.748 5 C -0.234 4.234 6 H 0.052 0.948 7 C -0.066 4.066 8 N -0.986 5.986 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.299 1.299 12 H -0.247 1.247 13 C -0.121 4.121 14 C 0.103 3.897 15 N -0.614 5.614 16 C 0.526 3.474 17 O -0.582 6.582 18 C -0.089 4.089 19 C -0.074 4.074 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.062 4.062 24 C -0.132 4.132 25 C -0.164 4.164 26 C -0.175 4.175 27 C -0.117 4.117 28 C 0.123 3.877 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.019 0.981 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.118 0.882 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.124 0.876 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -33.983 -9.708 35.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.076 4.076 3 C 0.045 3.955 4 N -0.394 5.394 5 C -0.365 4.365 6 H 0.070 0.930 7 C -0.257 4.257 8 N -0.636 5.636 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.226 1.226 12 H -0.171 1.171 13 C -0.159 4.159 14 C -0.018 4.018 15 N -0.348 5.348 16 C 0.317 3.683 17 O -0.462 6.462 18 C -0.128 4.128 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.062 4.062 24 C -0.150 4.150 25 C -0.201 4.201 26 C -0.212 4.212 27 C -0.135 4.135 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.136 0.864 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.125 0.875 49 H 0.105 0.895 50 H 0.142 0.858 51 H 0.085 0.915 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.593 -33.794 -10.446 35.553 hybrid contribution -0.348 0.796 0.666 1.095 sum -3.941 -32.997 -9.780 34.641 Atomic orbital electron populations 1.21633 0.92993 1.01819 1.01827 1.21847 0.96513 0.93676 0.95607 1.20620 0.96591 0.90186 0.88142 1.42550 1.63707 1.11117 1.22072 1.19015 1.25690 0.88825 1.03004 0.92972 1.25544 1.02687 0.96816 1.00646 1.69902 1.52438 1.12835 1.28438 0.85411 0.78979 0.78178 0.79259 1.19836 1.22644 1.17144 1.22717 1.02508 0.93264 0.97386 1.22268 1.04010 0.97546 0.78021 1.48567 1.72429 1.05571 1.08205 1.20781 0.75285 0.86537 0.85721 1.90717 1.52042 1.86799 1.16677 1.20696 1.07477 0.87491 0.97177 1.19473 0.93592 0.96747 0.97610 1.21231 0.98131 0.97538 0.97467 1.21357 0.98405 0.97658 0.96631 1.21256 0.92022 1.00931 1.00836 1.19319 0.94131 0.96727 0.95977 1.21110 0.95631 1.05028 0.93247 1.23165 1.04259 0.90914 1.01760 1.23076 1.03244 0.99872 0.95021 1.20955 0.97502 0.97691 0.97324 1.22110 1.00667 0.80504 0.96764 0.92852 0.93166 0.91257 0.95432 0.96305 0.79700 0.93401 0.89384 0.90480 0.88875 0.88719 0.85418 0.85659 0.85230 0.84191 0.84648 0.86441 0.87905 0.86973 0.87494 0.89544 0.85819 0.91482 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.41 71.98 0.61 -2.69 16 2 C -0.08 -2.03 0.62 -50.71 -0.03 -2.06 16 3 C 0.17 6.26 5.23 86.38 0.45 6.71 16 4 N -0.75 -33.30 4.98 -343.44 -1.71 -35.01 16 5 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 6 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 7 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 8 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 9 Si 0.96 43.83 27.74 68.60 1.90 45.73 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 13 C -0.12 -2.65 5.38 31.78 0.17 -2.48 16 14 C 0.10 1.61 6.15 86.73 0.53 2.15 16 15 N -0.61 -13.30 3.31 -811.34 -2.69 -15.99 16 16 C 0.53 12.42 7.84 87.66 0.69 13.11 16 17 O -0.58 -19.35 16.29 -3.04 -0.05 -19.40 16 18 C -0.09 -1.36 5.02 29.10 0.15 -1.21 16 19 C -0.07 -1.42 4.37 -19.87 -0.09 -1.51 16 20 C -0.13 -2.34 9.70 22.27 0.22 -2.13 16 21 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 22 C -0.13 -2.28 9.30 22.27 0.21 -2.08 16 23 C -0.06 -1.14 5.61 -19.86 -0.11 -1.25 16 24 C -0.13 -1.95 6.04 -11.54 -0.07 -2.02 16 25 C -0.16 -1.80 9.86 30.62 0.30 -1.49 16 26 C -0.18 -2.37 10.17 30.62 0.31 -2.06 16 27 C -0.12 -2.30 9.39 22.27 0.21 -2.09 16 28 C 0.12 3.21 5.85 86.93 0.51 3.72 16 29 H 0.05 1.51 7.19 -2.39 -0.02 1.50 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.53 7.89 -2.39 -0.02 1.51 16 32 H 0.03 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.37 15.26 4.23 -92.70 -0.39 14.87 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.09 1.87 7.95 -2.38 -0.02 1.85 16 37 H 0.08 1.82 8.04 -2.39 -0.02 1.80 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.13 1.28 8.09 -2.38 -0.02 1.27 16 41 H 0.13 1.31 8.08 -2.39 -0.02 1.29 16 42 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 43 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.77 6.02 -2.91 -0.02 1.76 16 45 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.10 1.01 6.18 -2.39 -0.01 0.99 16 47 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 51 H 0.07 1.80 8.01 -2.39 -0.02 1.78 16 52 H 0.06 1.87 7.95 -2.38 -0.02 1.85 16 Total: -1.00 -75.56 415.41 3.83 -71.73 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.45 Total: 30.45 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 5.62 Total: -14.95 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -4.09 Total: -113.57 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Total: -75.56 3.83 -71.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671764098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.171 kcal (2) G-P(sol) polarization free energy of solvation -75.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds