Wall clock time and date at job start Wed Apr 1 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 110.37065 * 2 1 4 4 N 1.46504 * 109.46906 * 302.19212 * 3 2 1 5 5 C 1.36938 * 119.99265 * 180.02562 * 4 3 2 6 6 H 1.07993 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.38814 * 119.99499 * 180.02562 * 5 4 3 8 8 N 1.31622 * 119.99821 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00197 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46888 * 90.00237 * 9 7 5 11 11 H 1.48504 * 109.47517 * 210.00393 * 9 7 5 12 12 H 1.48505 * 109.47084 * 330.00563 * 9 7 5 13 13 C 1.54624 * 110.32331 * 237.81355 * 2 1 3 14 14 C 1.54598 * 102.91176 * 262.80233 * 13 2 1 15 15 N 1.48118 * 103.42352 * 322.87216 * 14 13 2 16 16 C 1.34774 * 127.03242 * 219.28302 * 15 14 13 17 17 O 1.21285 * 119.99802 * 179.68197 * 16 15 14 18 18 C 1.50701 * 119.99914 * 359.68821 * 16 15 14 19 19 C 1.50709 * 109.46786 * 179.97438 * 18 16 15 20 20 C 1.38252 * 120.00106 * 269.97199 * 19 18 16 21 21 C 1.38211 * 120.00240 * 179.97438 * 20 19 18 22 22 C 1.38260 * 119.99780 * 359.78770 * 21 20 19 23 23 C 1.38215 * 119.99744 * 0.49235 * 22 21 20 24 24 C 1.50706 * 119.99807 * 179.76100 * 23 22 21 25 25 C 1.53002 * 117.49668 * 59.72680 * 24 23 22 26 26 C 1.53000 * 60.02940 * 252.51929 * 25 24 23 27 27 C 1.38215 * 119.99678 * 89.99862 * 19 18 16 28 28 C 1.47487 * 105.93261 * 39.02020 * 15 14 13 29 29 H 1.09001 * 109.46934 * 297.80946 * 1 2 3 30 30 H 1.08993 * 109.47496 * 57.81049 * 1 2 3 31 31 H 1.09001 * 109.46773 * 177.81244 * 1 2 3 32 32 H 1.08996 * 109.46557 * 62.19224 * 3 2 1 33 33 H 1.09000 * 109.46716 * 182.19374 * 3 2 1 34 34 H 0.96994 * 120.00108 * 359.97438 * 4 3 2 35 35 H 0.97003 * 119.99851 * 180.02562 * 8 7 5 36 36 H 1.08994 * 110.74060 * 21.29198 * 13 2 1 37 37 H 1.09007 * 110.73667 * 144.44017 * 13 2 1 38 38 H 1.08987 * 110.61868 * 204.35647 * 14 13 2 39 39 H 1.09001 * 110.54317 * 81.35138 * 14 13 2 40 40 H 1.08999 * 109.47193 * 59.99864 * 18 16 15 41 41 H 1.08994 * 109.46868 * 299.99428 * 18 16 15 42 42 H 1.08003 * 120.00289 * 0.02562 * 20 19 18 43 43 H 1.08000 * 120.00120 * 180.02562 * 21 20 19 44 44 H 1.07996 * 119.99988 * 180.25367 * 22 21 20 45 45 H 1.09000 * 115.55924 * 205.41085 * 24 23 22 46 46 H 1.09002 * 117.49918 * 145.01964 * 25 24 23 47 47 H 1.09002 * 117.49754 * 0.02562 * 25 24 23 48 48 H 1.09008 * 117.49673 * 107.47884 * 26 25 24 49 49 H 1.08999 * 117.49942 * 252.47315 * 26 25 24 50 50 H 1.08000 * 120.00036 * 359.97367 * 27 19 18 51 51 H 1.09000 * 109.90998 * 94.14281 * 28 15 14 52 52 H 1.09003 * 109.91439 * 215.41949 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 7 1.5427 2.1483 -1.1689 5 6 1.8869 3.4566 -1.3809 6 1 2.5411 3.9623 -0.6862 7 6 1.3939 4.1333 -2.4881 8 7 1.7250 5.3907 -2.6922 9 14 0.2616 3.2589 -3.6893 10 1 -1.1488 3.4397 -3.2612 11 1 0.4439 3.8310 -5.0476 12 1 0.5896 1.8107 -3.7141 13 6 2.0670 -0.7724 -1.2272 14 6 2.3641 -2.1753 -0.6495 15 7 2.8805 -1.8857 0.7083 16 6 3.8924 -2.5108 1.3422 17 8 4.2152 -2.1635 2.4585 18 6 4.6228 -3.6410 0.6639 19 6 5.7009 -4.1629 1.5785 20 6 6.9715 -3.6203 1.5294 21 6 7.9601 -4.0986 2.3686 22 6 7.6772 -5.1167 3.2602 23 6 6.4084 -5.6631 3.3052 24 6 6.1014 -6.7766 4.2732 25 6 6.2911 -6.4889 5.7640 26 6 7.2773 -7.3995 5.0297 27 6 5.4194 -5.1845 2.4660 28 6 2.0650 -0.7693 1.2220 29 1 -0.3633 0.4794 0.9090 30 1 -0.3634 0.5474 -0.8696 31 1 -0.3633 -1.0269 -0.0392 32 1 1.7396 1.9417 0.9090 33 1 3.1518 1.4174 -0.0393 34 1 0.9554 1.6940 -1.7930 35 1 1.3802 5.8637 -3.4657 36 1 1.3105 -0.8276 -2.0098 37 1 2.9788 -0.3100 -1.6055 38 1 3.1194 -2.6846 -1.2477 39 1 1.4508 -2.7678 -0.5953 40 1 5.0742 -3.2793 -0.2600 41 1 3.9202 -4.4424 0.4355 42 1 7.1915 -2.8221 0.8360 43 1 8.9526 -3.6744 2.3305 44 1 8.4485 -5.4876 3.9187 45 1 5.2807 -7.4347 3.9881 46 1 5.5952 -6.9578 6.4596 47 1 6.6376 -5.4942 6.0445 48 1 8.2726 -7.0038 4.8269 49 1 7.2305 -8.4675 5.2426 50 1 4.4268 -5.6083 2.5042 51 1 1.2332 -1.1572 1.8100 52 1 2.6809 -0.1110 1.8347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671764099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:22 Heat of formation + Delta-G solvation = 27.064828 kcal Electronic energy + Delta-G solvation = -29217.079770 eV Core-core repulsion = 25375.288572 eV Total energy + Delta-G solvation = -3841.791198 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.49555 -39.76174 -38.20800 -36.97869 -34.98822 -33.05574 -32.51571 -30.99935 -30.71850 -29.57926 -28.25634 -26.51154 -25.46252 -24.02775 -23.25141 -22.85941 -22.26953 -21.97726 -20.25907 -19.24310 -18.81533 -17.70043 -17.21037 -16.90420 -16.34884 -16.00525 -15.56874 -15.15495 -14.80091 -14.55594 -14.31692 -14.22924 -13.96170 -13.77390 -13.40527 -13.33727 -13.23727 -12.86389 -12.51126 -12.48126 -12.46890 -12.24968 -12.12288 -11.94344 -11.90350 -11.54830 -11.42076 -11.35923 -11.19025 -10.94631 -10.90969 -10.71399 -10.65838 -10.46166 -10.36110 -10.05598 -9.89385 -9.58366 -8.94002 -8.91373 -8.71517 -8.67858 -7.23858 -5.77607 -3.12955 1.11628 1.21529 2.60119 2.89696 3.32922 3.35202 3.35639 3.42406 3.78612 4.19027 4.38642 4.44893 4.55232 4.56792 4.62024 4.63514 4.71146 4.76785 4.84412 4.88941 4.93631 5.06659 5.15132 5.19640 5.25432 5.29313 5.30396 5.37744 5.42438 5.51287 5.53334 5.58427 5.68318 5.68960 5.73340 5.77469 5.82411 5.84169 5.87785 5.89278 6.06264 6.19469 6.24798 6.29375 6.35034 6.38150 6.42057 6.45177 6.65506 6.73328 6.81653 7.50834 7.99192 8.13707 8.41311 9.20496 9.92362 10.12616 11.40958 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.001963 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.207477 B =14258.728979 C =14575.418381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C 0.172 3.828 4 N -0.752 5.752 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.124 4.124 14 C 0.098 3.902 15 N -0.620 5.620 16 C 0.532 3.468 17 O -0.533 6.533 18 C -0.098 4.098 19 C -0.060 4.060 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.053 4.053 24 C -0.117 4.117 25 C -0.169 4.169 26 C -0.178 4.178 27 C -0.098 4.098 28 C 0.118 3.882 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.119 0.881 51 H 0.067 0.933 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -28.646 9.808 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.085 4.085 3 C 0.044 3.956 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.162 4.162 14 C -0.025 4.025 15 N -0.355 5.355 16 C 0.321 3.679 17 O -0.409 6.409 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.053 4.053 24 C -0.135 4.135 25 C -0.206 4.206 26 C -0.215 4.215 27 C -0.116 4.116 28 C -0.005 4.005 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.137 0.863 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.593 -28.280 10.506 31.110 hybrid contribution -0.924 -0.345 -1.070 1.456 sum 6.669 -28.626 9.436 30.870 Atomic orbital electron populations 1.21821 0.93447 1.00849 1.02981 1.21715 0.96299 0.96636 0.93881 1.20677 0.96167 0.87769 0.90956 1.42695 1.58969 1.11404 1.26755 1.19066 1.24684 0.85923 1.07563 0.89269 1.24669 1.00370 0.95809 0.98348 1.69704 1.48851 1.09334 1.30330 0.86573 0.81494 0.79020 0.81573 1.21076 1.21745 1.20371 1.22763 1.02635 0.93569 0.97227 1.22560 0.99008 0.98190 0.82703 1.48834 1.33541 1.35267 1.17843 1.20105 0.78807 0.83144 0.85876 1.90739 1.65281 1.65680 1.19209 1.20650 0.96965 0.97308 0.98850 1.19239 0.93843 0.95994 0.96964 1.21001 0.92730 0.99219 0.99598 1.21061 0.99268 0.96912 0.95981 1.20992 0.96306 0.97355 0.99409 1.19031 0.93656 0.96283 0.96288 1.21033 1.01185 0.99001 0.92306 1.23034 1.02731 1.01332 0.93516 1.23076 0.95051 0.99147 1.04182 1.20713 0.98516 0.96959 0.95440 1.22102 0.94291 0.87902 0.96155 0.92171 0.91718 0.93140 0.95257 0.95413 0.80558 0.93082 0.90048 0.89911 0.90287 0.90938 0.87859 0.88098 0.86102 0.85978 0.86180 0.87046 0.88460 0.88471 0.88365 0.88492 0.86340 0.91515 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.05 37.16 0.30 -1.48 16 2 C -0.08 -1.21 0.67 -153.13 -0.10 -1.31 16 3 C 0.17 3.26 4.85 -4.04 -0.02 3.24 16 4 N -0.75 -17.25 4.92 -59.91 -0.29 -17.55 16 5 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 9 Si 0.88 21.64 27.74 -169.99 -4.71 16.92 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 13 C -0.12 -1.58 5.72 -25.04 -0.14 -1.72 16 14 C 0.10 0.97 6.93 -2.31 -0.02 0.95 16 15 N -0.62 -7.73 3.29 -169.98 -0.56 -8.29 16 16 C 0.53 7.10 7.88 -10.99 -0.09 7.01 16 17 O -0.53 -9.30 16.37 5.55 0.09 -9.21 16 18 C -0.10 -0.94 4.77 -29.03 -0.14 -1.07 16 19 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 20 C -0.11 -1.16 9.70 -39.59 -0.38 -1.55 16 21 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.18 9.29 -39.58 -0.37 -1.54 16 23 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 24 C -0.12 -0.94 6.05 -91.73 -0.55 -1.49 16 25 C -0.17 -1.24 10.16 -26.73 -0.27 -1.51 16 26 C -0.18 -1.15 9.86 -26.70 -0.26 -1.41 16 27 C -0.10 -1.04 9.39 -39.58 -0.37 -1.41 16 28 C 0.12 1.61 6.29 -2.98 -0.02 1.59 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.36 7.95 4.04 -40.82 -0.16 7.78 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 37 H 0.08 1.20 7.84 -51.92 -0.41 0.80 16 38 H 0.08 0.61 7.23 -51.94 -0.38 0.23 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.82 7.84 -51.93 -0.41 0.41 16 41 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.92 6.03 -52.49 -0.32 0.60 16 45 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.10 0.60 6.18 -51.92 -0.32 0.28 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 52 H 0.08 1.23 7.59 -51.93 -0.39 0.83 16 LS Contribution 413.55 15.07 6.23 6.23 Total: -1.00 -34.34 413.55 -11.23 -45.58 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.63 Total: 7.21 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -4.14 Total: -12.41 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.08 Total: -54.33 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.34 -11.23 -45.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671764099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.643 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds