Wall clock time and date at job start Wed Apr 1 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.45684 * 2 1 4 4 C 1.36935 * 119.99932 * 299.97505 * 3 2 1 5 5 H 1.08003 * 120.00230 * 359.97438 * 4 3 2 6 6 C 1.38815 * 119.99931 * 179.97438 * 4 3 2 7 7 N 1.31612 * 120.00083 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99826 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47277 * 89.99907 * 8 6 4 10 10 H 1.48501 * 109.47213 * 209.99879 * 8 6 4 11 11 H 1.48497 * 109.47323 * 329.99742 * 8 6 4 12 12 C 1.53036 * 109.46318 * 119.97187 * 2 1 3 13 13 C 1.53193 * 109.31433 * 181.38740 * 12 2 1 14 14 N 1.46929 * 108.77146 * 305.36699 * 13 12 2 15 15 C 1.34776 * 120.62774 * 233.57883 * 14 13 12 16 16 O 1.21284 * 120.00476 * 0.02562 * 15 14 13 17 17 C 1.50705 * 120.00081 * 180.02562 * 15 14 13 18 18 C 1.50693 * 109.47542 * 180.02562 * 17 15 14 19 19 C 1.38256 * 120.03431 * 89.99813 * 18 17 15 20 20 C 1.38095 * 119.93514 * 179.97438 * 19 18 17 21 21 C 1.38495 * 120.21634 * 359.97438 * 20 19 18 22 22 C 1.38216 * 119.85241 * 0.03185 * 21 20 19 23 23 C 1.38107 * 120.03257 * 269.96102 * 18 17 15 24 24 C 1.51367 * 109.75788 * 179.97438 * 22 21 20 25 25 C 1.54347 * 105.17417 * 342.82277 * 24 22 21 26 26 C 1.51680 * 130.30753 * 179.83184 * 21 20 19 27 27 C 1.46929 * 118.73976 * 53.86281 * 14 13 12 28 28 C 1.53036 * 109.46022 * 240.04431 * 2 1 3 29 29 H 1.08998 * 109.46893 * 300.02237 * 1 2 3 30 30 H 1.08992 * 109.47250 * 60.02671 * 1 2 3 31 31 H 1.09000 * 109.46691 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00147 * 119.97603 * 3 2 1 33 33 H 0.97000 * 120.00164 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.49485 * 61.44050 * 12 2 1 35 35 H 1.09001 * 109.52545 * 301.35585 * 12 2 1 36 36 H 1.08990 * 109.58742 * 185.58132 * 13 12 2 37 37 H 1.08999 * 109.70250 * 65.22164 * 13 12 2 38 38 H 1.09007 * 109.46760 * 60.00297 * 17 15 14 39 39 H 1.09006 * 109.46987 * 300.01103 * 17 15 14 40 40 H 1.08008 * 120.02561 * 0.02562 * 19 18 17 41 41 H 1.08004 * 119.89288 * 180.02562 * 20 19 18 42 42 H 1.07995 * 119.89086 * 0.06525 * 23 18 17 43 43 H 1.08994 * 110.30444 * 223.89683 * 24 22 21 44 44 H 1.09000 * 110.30530 * 101.74809 * 24 22 21 45 45 H 1.09002 * 110.82432 * 144.56674 * 25 24 22 46 46 H 1.09005 * 110.82182 * 267.92131 * 25 24 22 47 47 H 1.08998 * 110.25544 * 78.29277 * 26 21 20 48 48 H 1.09000 * 110.49386 * 316.04090 * 26 21 20 49 49 H 1.09002 * 109.58760 * 65.92390 * 27 14 13 50 50 H 1.09005 * 109.58481 * 186.35140 * 27 14 13 51 51 H 1.08996 * 109.49929 * 298.56534 * 28 2 1 52 52 H 1.09003 * 109.49701 * 58.62701 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6874 2.2243 -1.0273 5 1 1.0672 1.8707 -1.8377 6 6 2.1494 3.5333 -1.0270 7 7 1.8312 4.3437 -2.0141 8 14 3.2226 4.1447 0.3744 9 1 4.6505 3.9033 0.0460 10 1 2.9990 5.5996 0.5708 11 1 2.8714 3.4174 1.6205 12 6 2.0399 -0.7208 1.2500 13 6 3.5715 -0.6886 1.2641 14 7 4.0679 -1.2487 -0.0003 15 6 4.9622 -2.2569 -0.0004 16 8 5.3646 -2.7109 1.0498 17 6 5.4624 -2.8204 -1.3056 18 6 6.4450 -3.9292 -1.0305 19 6 6.0005 -5.2323 -0.9047 20 6 6.9029 -6.2470 -0.6531 21 6 8.2527 -5.9639 -0.5268 22 6 8.6971 -4.6612 -0.6525 23 6 7.7906 -3.6449 -0.9046 24 6 10.1995 -4.6136 -0.4742 25 6 10.5684 -5.9503 0.2036 26 6 9.4267 -6.8840 -0.2516 27 6 3.5756 -0.6845 -1.2645 28 6 2.0399 -0.7205 -1.2502 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.5753 1.6989 0.7277 33 1 2.1543 5.2583 -2.0141 34 1 1.6980 -1.7557 1.2380 35 1 1.6573 -0.2215 2.1401 36 1 3.9418 -1.2846 2.0981 37 1 3.9164 0.3401 1.3685 38 1 5.9536 -2.0326 -1.8770 39 1 4.6218 -3.2137 -1.8775 40 1 4.9486 -5.4565 -1.0039 41 1 6.5549 -7.2648 -0.5554 42 1 8.1370 -2.6267 -1.0026 43 1 10.4782 -3.7759 0.1649 44 1 10.6929 -4.5319 -1.4427 45 1 11.5318 -6.3135 -0.1544 46 1 10.5745 -5.8459 1.2886 47 1 9.7111 -7.4149 -1.1600 48 1 9.1793 -7.5920 0.5395 49 1 3.9188 0.3454 -1.3632 50 1 3.9487 -1.2778 -2.0993 51 1 1.6979 -1.7553 -1.2386 52 1 1.6567 -0.2207 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673997272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:26 Heat of formation + Delta-G solvation = -5.225642 kcal Electronic energy + Delta-G solvation = -30205.016641 eV Core-core repulsion = 26361.825223 eV Total energy + Delta-G solvation = -3843.191418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -40.50593 -39.80328 -37.97905 -36.05008 -34.57174 -32.52816 -32.12141 -31.11086 -30.34595 -29.73851 -28.20230 -27.68423 -26.33523 -23.74891 -23.01128 -22.87176 -22.42613 -20.99826 -20.59725 -19.34440 -18.01940 -17.79542 -16.89843 -16.35299 -16.03530 -15.68922 -15.32173 -15.01494 -14.72834 -14.52941 -14.29741 -13.70406 -13.55975 -13.46713 -13.34003 -13.13938 -13.08307 -13.05355 -12.59963 -12.57538 -12.20050 -12.01206 -11.88326 -11.77236 -11.44906 -11.41626 -11.28521 -11.27895 -11.07042 -11.02082 -10.88357 -10.83911 -10.82200 -10.38898 -10.19692 -9.82726 -9.59045 -9.50412 -8.98552 -8.80555 -8.45209 -8.30632 -7.30296 -5.80813 -3.16104 1.24677 1.35437 2.81769 3.20948 3.33432 3.36634 3.42909 3.70769 4.19605 4.35293 4.55112 4.64147 4.73427 4.78401 4.85018 4.92233 5.06131 5.09331 5.18066 5.27064 5.28090 5.37416 5.41604 5.44076 5.44421 5.47077 5.49856 5.55291 5.59783 5.61284 5.65812 5.69419 5.89020 5.91554 5.94913 6.00138 6.05663 6.10170 6.15214 6.29159 6.32148 6.35953 6.40417 6.52344 6.53428 6.55886 6.65069 6.70013 6.93795 6.95077 6.99559 7.68360 7.95084 8.38065 8.38667 9.16617 9.89706 10.09790 11.37339 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002507 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.615917 B =11168.131603 C =11855.549930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.203 3.797 3 N -0.742 5.742 4 C -0.236 4.236 5 H 0.092 0.908 6 C 0.006 3.994 7 N -0.933 5.933 8 Si 0.878 3.122 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C -0.132 4.132 13 C 0.116 3.884 14 N -0.603 5.603 15 C 0.515 3.485 16 O -0.546 6.546 17 C -0.102 4.102 18 C -0.058 4.058 19 C -0.105 4.105 20 C -0.107 4.107 21 C -0.103 4.103 22 C -0.098 4.098 23 C -0.092 4.092 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.080 4.080 27 C 0.112 3.888 28 C -0.133 4.133 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.072 0.928 51 H 0.051 0.949 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 -21.286 1.505 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 N -0.386 5.386 4 C -0.366 4.366 5 H 0.110 0.890 6 C -0.190 4.190 7 N -0.581 5.581 8 Si 0.708 3.292 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.204 1.204 12 C -0.171 4.171 13 C -0.007 4.007 14 N -0.336 5.336 15 C 0.302 3.698 16 O -0.424 6.424 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.103 4.103 22 C -0.098 4.098 23 C -0.110 4.110 24 C -0.119 4.119 25 C -0.158 4.158 26 C -0.117 4.117 27 C -0.010 4.010 28 C -0.173 4.173 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.106 0.894 50 H 0.090 0.910 51 H 0.070 0.930 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.781 -21.397 1.857 24.497 hybrid contribution 0.499 0.862 0.863 1.317 sum 12.280 -20.536 2.720 24.081 Atomic orbital electron populations 1.22188 0.96967 0.99246 1.02490 1.19491 0.92433 0.85050 0.91768 1.42897 1.61548 1.07685 1.26489 1.18962 1.26373 0.91387 0.99839 0.88993 1.24628 1.00566 0.96345 0.97441 1.69682 1.49747 1.06407 1.32293 0.86666 0.81133 0.78257 0.83118 1.21223 1.21882 1.20405 1.22128 0.94869 1.00809 0.99250 1.21511 0.94136 0.98796 0.86208 1.48159 1.42679 1.34570 1.08195 1.20430 0.78927 0.79428 0.90975 1.90681 1.58042 1.60225 1.33448 1.20701 0.99216 0.97666 0.96565 1.19176 0.93237 0.93698 0.99740 1.20845 0.99265 0.92161 0.99985 1.20520 0.91869 0.99077 1.01042 1.20600 0.94017 0.95125 1.00594 1.20476 0.95453 0.93659 1.00205 1.20426 0.92033 0.98458 1.00071 1.21034 0.91399 0.98415 1.01049 1.22290 0.98069 0.94708 1.00770 1.21081 0.92302 0.97034 1.01323 1.21882 0.95351 1.00064 0.83688 1.22346 0.94443 0.99277 1.01264 0.93190 0.91987 0.94368 0.80603 0.93118 0.91467 0.90880 0.89723 0.91552 0.87949 0.87908 0.86082 0.86426 0.86469 0.90766 0.90348 0.90692 0.90991 0.90448 0.90874 0.89357 0.90963 0.93032 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.44 37.16 0.31 -2.21 16 2 C 0.20 3.50 0.74 -131.78 -0.10 3.41 16 3 N -0.74 -15.73 3.93 -47.19 -0.19 -15.91 16 4 C -0.24 -6.00 9.16 -15.06 -0.14 -6.13 16 5 H 0.09 2.51 6.93 -52.48 -0.36 2.14 16 6 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 7 N -0.93 -28.00 13.97 55.49 0.78 -27.22 16 8 Si 0.88 21.32 27.74 -169.99 -4.71 16.60 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 12 C -0.13 -2.00 4.96 -26.61 -0.13 -2.13 16 13 C 0.12 1.84 6.15 -3.71 -0.02 1.82 16 14 N -0.60 -9.22 2.97 -172.50 -0.51 -9.73 16 15 C 0.51 7.87 7.69 -10.98 -0.08 7.78 16 16 O -0.55 -10.13 15.45 5.55 0.09 -10.04 16 17 C -0.10 -1.20 4.18 -29.04 -0.12 -1.32 16 18 C -0.06 -0.73 4.37 -104.67 -0.46 -1.19 16 19 C -0.10 -1.24 9.70 -39.63 -0.38 -1.63 16 20 C -0.11 -1.19 10.04 -39.54 -0.40 -1.58 16 21 C -0.10 -1.14 6.15 -104.05 -0.64 -1.78 16 22 C -0.10 -1.13 6.14 -104.21 -0.64 -1.77 16 23 C -0.09 -1.15 9.70 -39.53 -0.38 -1.53 16 24 C -0.08 -0.72 6.77 -26.85 -0.18 -0.91 16 25 C -0.12 -0.90 7.07 -25.31 -0.18 -1.08 16 26 C -0.08 -0.65 6.80 -26.69 -0.18 -0.83 16 27 C 0.11 1.68 6.11 -3.49 -0.02 1.66 16 28 C -0.13 -2.09 4.72 -26.39 -0.12 -2.21 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.36 7.78 4.33 -40.82 -0.18 7.60 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.35 7.00 -51.93 -0.36 0.99 16 37 H 0.07 1.13 6.95 -51.93 -0.36 0.76 16 38 H 0.10 1.07 7.88 -51.93 -0.41 0.66 16 39 H 0.10 1.01 7.65 -51.93 -0.40 0.62 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.09 1.57 7.73 -51.93 -0.40 1.17 16 50 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 51 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.08 1.40 7.31 -51.93 -0.38 1.02 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -31.64 400.19 -11.11 -42.75 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.63 Total: 9.10 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.97 Total: -11.58 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.08 Total: -52.86 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.64 -11.11 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673997272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.527 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds