Wall clock time and date at job start Wed Apr 1 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38253 * 119.99743 * 264.72703 * 3 2 1 5 5 C 1.38224 * 119.99425 * 179.80873 * 4 3 2 6 6 C 1.38256 * 119.99757 * 0.39941 * 5 4 3 7 7 C 1.38209 * 120.00350 * 359.85673 * 6 5 4 8 8 C 1.38207 * 119.99537 * 85.00247 * 3 2 1 9 9 C 1.50701 * 120.00172 * 359.97438 * 8 3 2 10 10 H 1.08996 * 115.55020 * 334.41349 * 9 8 3 11 11 C 1.53000 * 117.49653 * 188.75011 * 9 8 3 12 12 C 1.52999 * 117.49657 * 120.09049 * 9 8 3 13 13 H 1.08996 * 117.50427 * 359.97438 * 12 9 8 14 14 C 1.50700 * 117.49797 * 215.00127 * 12 9 8 15 15 O 1.21287 * 120.00032 * 359.97438 * 14 12 9 16 16 N 1.34774 * 120.00266 * 180.02562 * 14 12 9 17 17 C 1.46502 * 120.00184 * 179.97438 * 16 14 12 18 18 H 1.09000 * 112.84823 * 23.80354 * 17 16 14 19 19 C 1.53784 * 113.61516 * 154.99743 * 17 16 14 20 20 C 1.53781 * 87.07872 * 89.11567 * 19 17 16 21 21 H 1.09001 * 113.61910 * 270.79807 * 20 19 17 22 22 C 1.53003 * 113.61171 * 139.97875 * 20 19 17 23 23 N 1.46509 * 109.47082 * 174.99984 * 22 20 19 24 24 C 1.36930 * 119.99788 * 180.02562 * 23 22 20 25 25 H 1.07995 * 120.00415 * 0.02562 * 24 23 22 26 26 C 1.38816 * 120.00011 * 180.02562 * 24 23 22 27 27 N 1.31621 * 119.99850 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00183 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.47243 * 89.99814 * 28 26 24 30 30 H 1.48507 * 109.47057 * 209.99516 * 28 26 24 31 31 H 1.48499 * 109.47441 * 329.99546 * 28 26 24 32 32 C 1.53780 * 113.61493 * 252.49683 * 17 16 14 33 33 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 34 34 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 36 36 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 37 37 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 38 38 H 1.07994 * 120.00682 * 359.97438 * 4 3 2 39 39 H 1.08000 * 119.99632 * 180.23063 * 5 4 3 40 40 H 1.08001 * 119.99270 * 179.83212 * 6 5 4 41 41 H 1.08000 * 119.99875 * 179.97438 * 7 6 5 42 42 H 1.09000 * 117.50582 * 359.97438 * 11 9 8 43 43 H 1.09001 * 117.50162 * 145.02380 * 11 9 8 44 44 H 0.96996 * 119.99745 * 0.02562 * 16 14 12 45 45 H 1.08999 * 113.61213 * 203.66637 * 19 17 16 46 46 H 1.09003 * 113.60936 * 334.57248 * 19 17 16 47 47 H 1.08995 * 109.47186 * 294.99944 * 22 20 19 48 48 H 1.08999 * 109.47155 * 55.00406 * 22 20 19 49 49 H 0.97001 * 119.99800 * 0.02562 * 23 22 20 50 50 H 0.96999 * 120.00505 * 180.02562 * 27 26 24 51 51 H 1.09001 * 113.61207 * 25.43277 * 32 17 16 52 52 H 1.09003 * 113.61352 * 156.33163 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3665 2.0359 -1.1923 5 6 2.8235 3.3404 -1.1926 6 6 2.9542 4.0273 0.0002 7 6 2.6252 3.4106 1.1925 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4347 2.4925 10 1 1.0748 0.6292 2.4191 11 6 1.7757 2.3027 3.7520 12 6 2.9085 1.2945 3.5434 13 1 3.8939 1.6882 3.2944 14 6 2.9019 0.0532 4.3978 15 8 2.0428 -0.7880 4.2386 16 7 3.8499 -0.1218 5.3396 17 6 3.8431 -1.3283 6.1706 18 1 3.3271 -2.1644 5.6987 19 6 5.2261 -1.6965 6.7334 20 6 4.8876 -0.8011 7.9370 21 1 5.1795 0.2404 7.8023 22 6 5.3458 -1.3778 9.2780 23 7 5.0871 -0.4046 10.3422 24 6 5.4175 -0.7023 11.6372 25 1 5.8691 -1.6542 11.8742 26 6 5.1719 0.2196 12.6456 27 7 4.6220 1.3800 12.3568 28 14 5.6232 -0.1861 14.4122 29 1 7.0133 0.2605 14.6831 30 1 4.6907 0.5112 15.3340 31 1 5.5243 -1.6526 14.6242 32 6 3.4069 -1.0734 7.6231 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5139 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 1.8933 -0.5138 -0.8900 38 1 2.2680 1.4981 -2.1236 39 1 3.0810 3.8221 -2.1243 40 1 3.3139 5.0457 0.0001 41 1 2.7277 3.9471 2.1242 42 1 2.0162 3.3600 3.6406 43 1 1.0259 2.0679 4.5076 44 1 4.5363 0.5515 5.4677 45 1 5.3269 -2.7514 6.9886 46 1 6.0554 -1.3242 6.1319 47 1 4.7973 -2.2967 9.4848 48 1 6.4133 -1.5938 9.2349 49 1 4.6818 0.4506 10.1292 50 1 4.4507 2.0244 13.0612 51 1 2.7677 -0.1983 7.7398 52 1 3.0104 -1.9580 8.1215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675782254.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:16 Heat of formation + Delta-G solvation = 31.016293 kcal Electronic energy + Delta-G solvation = -28599.307051 eV Core-core repulsion = 24757.687201 eV Total energy + Delta-G solvation = -3841.619850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.73505 -39.88789 -38.53505 -36.44318 -34.52792 -34.49491 -33.10018 -30.99420 -30.73172 -29.63964 -27.02913 -25.49818 -25.02581 -24.23139 -24.04932 -23.10145 -21.42430 -21.36327 -20.73136 -20.09732 -19.05953 -17.79204 -17.03339 -16.81252 -16.13751 -15.75821 -15.37665 -15.06720 -14.88883 -14.66130 -14.38129 -14.15373 -13.99469 -13.84200 -13.72975 -13.49951 -13.32204 -12.87537 -12.75015 -12.53060 -12.38131 -12.14092 -12.13931 -12.05342 -11.69627 -11.65075 -11.19918 -11.14011 -11.02915 -10.84676 -10.82539 -10.69342 -10.47562 -10.33773 -10.08359 -9.94645 -9.82522 -9.59881 -9.09335 -9.00591 -8.83436 -8.78354 -6.89215 -5.75089 -3.03153 0.96991 1.07412 2.37840 2.97210 3.33460 3.44199 3.49248 3.51071 3.76570 4.22278 4.40044 4.47592 4.54192 4.57565 4.59328 4.69307 4.69972 4.82406 4.83349 4.87425 4.90569 5.09630 5.12705 5.15034 5.19942 5.21366 5.28381 5.39323 5.57680 5.59117 5.62622 5.69608 5.70075 5.74466 5.77227 5.85996 5.87948 5.94156 5.98841 6.02443 6.11929 6.20265 6.21836 6.24900 6.32484 6.38584 6.43244 6.64277 6.68901 6.79552 6.94779 7.45181 7.71232 8.15266 8.44170 9.55118 10.14425 10.48912 11.47907 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.001741 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.891442 B =16080.380288 C =16724.974372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.051 4.051 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.143 4.143 12 C -0.178 4.178 13 H 0.125 0.875 14 C 0.546 3.454 15 O -0.541 6.541 16 N -0.704 5.704 17 C 0.115 3.885 18 H 0.099 0.901 19 C -0.138 4.138 20 C -0.113 4.113 21 H 0.087 0.913 22 C 0.162 3.838 23 N -0.732 5.732 24 C -0.238 4.238 25 H 0.070 0.930 26 C -0.016 4.016 27 N -0.934 5.934 28 Si 0.907 3.093 29 H -0.290 1.290 30 H -0.292 1.292 31 H -0.282 1.282 32 C -0.138 4.138 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.403 0.597 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.020 0.980 48 H 0.018 0.982 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.068 0.932 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 2.459 -30.205 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.134 4.134 8 C -0.051 4.051 9 C -0.104 4.104 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.199 4.199 13 H 0.143 0.857 14 C 0.332 3.668 15 O -0.419 6.419 16 N -0.353 5.353 17 C 0.010 3.990 18 H 0.117 0.883 19 C -0.177 4.177 20 C -0.131 4.131 21 H 0.106 0.894 22 C 0.034 3.966 23 N -0.376 5.376 24 C -0.370 4.370 25 H 0.088 0.912 26 C -0.212 4.212 27 N -0.583 5.583 28 Si 0.738 3.262 29 H -0.218 1.218 30 H -0.218 1.218 31 H -0.208 1.208 32 C -0.177 4.177 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.237 0.763 45 H 0.113 0.887 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.217 0.783 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.315 1.737 -30.159 30.673 hybrid contribution 0.638 0.601 1.105 1.410 sum -4.677 2.338 -29.054 29.521 Atomic orbital electron populations 1.21744 0.94549 1.01946 1.02119 1.20603 0.96410 0.92519 1.03247 1.19734 0.98520 0.96265 0.92375 1.21031 0.99959 0.95201 0.97392 1.21140 0.99897 0.94781 0.98098 1.21105 1.00538 0.99969 0.92485 1.21079 0.99426 0.94484 0.98451 1.18972 0.99585 0.93764 0.92752 1.21132 1.00255 1.01844 0.87142 0.85231 1.23171 0.98987 0.96486 0.99410 1.22350 0.97106 0.97983 1.02466 0.85739 1.19572 0.81014 0.86578 0.79648 1.90691 1.37151 1.44539 1.69492 1.45603 1.30876 1.22943 1.35927 1.21955 0.98257 0.87637 0.91139 0.88337 1.23316 0.95791 1.01310 0.97261 1.22753 0.95777 0.99420 0.95191 0.89434 1.20644 0.96874 0.92709 0.86338 1.42346 1.74734 1.17452 1.03031 1.19250 1.33176 1.00298 0.84242 0.91238 1.24743 1.01845 0.96512 0.98059 1.69660 1.49167 1.07537 1.31948 0.86185 0.77643 0.77409 0.84941 1.21768 1.21792 1.20787 1.23408 0.97216 1.02667 0.94385 0.92296 0.92225 0.92746 0.90236 0.91173 0.86106 0.86180 0.86070 0.85765 0.87304 0.87514 0.76291 0.88725 0.91278 0.96212 0.96420 0.78345 0.93575 0.91338 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.74 37.16 0.36 -0.73 16 2 C -0.09 -0.73 5.38 -27.88 -0.15 -0.88 16 3 C -0.07 -0.60 5.13 -104.62 -0.54 -1.14 16 4 C -0.12 -0.91 9.68 -39.58 -0.38 -1.30 16 5 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 6 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 7 C -0.12 -0.93 9.30 -39.58 -0.37 -1.30 16 8 C -0.05 -0.45 5.61 -104.62 -0.59 -1.04 16 9 C -0.09 -0.80 4.66 -91.77 -0.43 -1.23 16 10 H 0.13 1.38 5.46 -51.93 -0.28 1.10 16 11 C -0.14 -1.22 9.57 -26.69 -0.26 -1.47 16 12 C -0.18 -1.67 5.82 -91.73 -0.53 -2.21 16 13 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.55 6.73 7.61 -10.99 -0.08 6.65 16 15 O -0.54 -8.54 15.86 5.55 0.09 -8.45 16 16 N -0.70 -8.00 5.26 -53.01 -0.28 -8.28 16 17 C 0.12 1.46 4.32 -67.12 -0.29 1.17 16 18 H 0.10 1.33 7.46 -51.93 -0.39 0.95 16 19 C -0.14 -1.67 7.39 -25.92 -0.19 -1.86 16 20 C -0.11 -1.74 3.63 -89.81 -0.33 -2.06 16 21 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 22 C 0.16 3.22 6.10 -4.04 -0.02 3.20 16 23 N -0.73 -18.64 5.60 -59.91 -0.34 -18.98 16 24 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 25 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 26 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 27 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 28 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 32 C -0.14 -2.06 7.43 -25.92 -0.19 -2.25 16 33 H 0.06 0.48 7.17 -51.93 -0.37 0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.74 6.94 -51.93 -0.36 0.38 16 37 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.81 6.03 -52.49 -0.32 0.50 16 42 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 43 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.40 3.79 8.70 -40.82 -0.36 3.43 16 45 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.38 10.25 7.67 -40.82 -0.31 9.93 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.09 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 420.57 15.07 6.34 6.34 Total: -1.00 -33.23 420.57 -12.08 -45.31 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.56 Total: 10.70 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -5.03 Total: -16.47 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.11 Total: -54.99 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.23 -12.08 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675782254.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.325 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds