Wall clock time and date at job start Wed Apr 1 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38233 * 120.00168 * 2 1 4 4 C 1.38233 * 119.99861 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00312 * 359.96433 * 4 3 2 6 6 C 1.50704 * 120.00396 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46847 * 89.99759 * 6 5 4 8 8 H 1.09003 * 109.46718 * 55.00492 * 7 6 5 9 9 C 1.52995 * 109.47435 * 295.00469 * 7 6 5 10 10 C 1.50698 * 109.47059 * 175.00118 * 7 6 5 11 11 O 1.21284 * 120.00138 * 0.02562 * 10 7 6 12 12 N 1.34780 * 119.99893 * 180.02562 * 10 7 6 13 13 C 1.46499 * 119.99670 * 180.02562 * 12 10 7 14 14 C 1.50704 * 109.47019 * 180.02562 * 13 12 10 15 15 C 1.29449 * 117.70106 * 94.99400 * 14 13 12 16 16 C 1.50322 * 123.65633 * 180.85608 * 15 14 13 17 17 N 1.47002 * 109.16304 * 349.03027 * 16 15 14 18 18 C 1.36939 * 121.37416 * 222.96833 * 17 16 15 19 19 H 1.08001 * 120.00281 * 155.97970 * 18 17 16 20 20 C 1.38818 * 119.99726 * 335.97587 * 18 17 16 21 21 N 1.31612 * 119.99921 * 344.49694 * 20 18 17 22 22 Si 1.86797 * 119.99708 * 164.50013 * 20 18 17 23 23 H 1.48491 * 109.47396 * 94.45524 * 22 20 18 24 24 H 1.48504 * 109.46704 * 214.45209 * 22 20 18 25 25 H 1.48494 * 109.47289 * 334.44931 * 22 20 18 26 26 C 1.47335 * 117.25348 * 42.94279 * 17 16 15 27 27 C 1.49975 * 117.68945 * 274.73788 * 14 13 12 28 28 C 1.38237 * 119.99693 * 0.27442 * 5 4 3 29 29 C 1.38234 * 119.99660 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47279 * 89.99137 * 1 2 3 31 31 H 1.09001 * 109.47320 * 209.99697 * 1 2 3 32 32 H 1.09005 * 109.47067 * 329.99475 * 1 2 3 33 33 H 1.08002 * 119.99953 * 359.97438 * 3 2 1 34 34 H 1.08009 * 119.99925 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.46971 * 330.00324 * 6 5 4 36 36 H 1.08998 * 109.47215 * 210.00236 * 6 5 4 37 37 H 1.09001 * 109.47328 * 60.00035 * 9 7 6 38 38 H 1.09000 * 109.47378 * 179.97438 * 9 7 6 39 39 H 1.09003 * 109.47187 * 299.99736 * 9 7 6 40 40 H 0.97001 * 119.99969 * 0.02562 * 12 10 7 41 41 H 1.09004 * 109.47397 * 299.99548 * 13 12 10 42 42 H 1.08997 * 109.47320 * 59.99855 * 13 12 10 43 43 H 1.08003 * 118.17140 * 0.88511 * 15 14 13 44 44 H 1.09004 * 109.51985 * 108.93013 * 16 15 14 45 45 H 1.09000 * 109.52402 * 229.12209 * 16 15 14 46 46 H 0.97004 * 120.00051 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.77858 * 57.80816 * 26 17 16 48 48 H 1.08999 * 109.78134 * 178.61916 * 26 17 16 49 49 H 1.09001 * 109.31295 * 281.28880 * 27 14 13 50 50 H 1.09003 * 109.31272 * 40.71751 * 27 14 13 51 51 H 1.08003 * 119.99592 * 179.73037 * 28 5 4 52 52 H 1.08002 * 120.00384 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2717 -0.0001 0.0018 6 6 5.7787 -0.0002 0.0018 7 6 6.2886 0.0014 1.4443 8 1 5.8540 -0.8399 1.9842 9 6 5.8839 1.3094 2.1270 10 6 7.7905 -0.1225 1.4463 11 8 8.3937 -0.2036 0.3973 12 7 8.4634 -0.1432 2.6140 13 6 9.9235 -0.2631 2.6158 14 6 10.4257 -0.2630 4.0367 15 6 10.6265 -1.4090 4.6041 16 6 11.1071 -1.5649 6.0199 17 7 11.5478 -0.2573 6.5266 18 6 12.6989 -0.1267 7.2567 19 1 13.2118 0.8232 7.2911 20 6 13.2066 -1.2152 7.9527 21 7 12.4492 -2.2697 8.1685 22 14 14.9647 -1.1832 8.5830 23 1 14.9773 -0.7127 9.9913 24 1 15.5406 -2.5502 8.5128 25 1 15.7740 -0.2616 7.7459 26 6 10.7002 0.9072 6.2161 27 6 10.6632 1.0651 4.6918 28 6 3.5804 -1.1972 -0.0032 29 6 2.1981 -1.1972 0.0005 30 1 -0.3634 0.0002 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1324 -0.0004 34 1 4.1206 2.1324 0.0001 35 1 6.1421 0.8892 -0.5129 36 1 6.1420 -0.8907 -0.5111 37 1 4.7976 1.3990 2.1256 38 1 6.2468 1.3103 3.1548 39 1 6.3186 2.1507 1.5871 40 1 7.9810 -0.0788 3.4530 41 1 10.2123 -1.1947 2.1290 42 1 10.3579 0.5785 2.0764 43 1 10.4387 -2.3031 4.0280 44 1 10.2943 -1.9412 6.6411 45 1 11.9415 -2.2658 6.0463 46 1 12.8038 -3.0302 8.6552 47 1 9.6927 0.7424 6.5981 48 1 11.1248 1.8035 6.6681 49 1 11.6124 1.4736 4.3448 50 1 9.8590 1.7494 4.4214 51 1 4.1205 -2.1325 -0.0066 52 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677636562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:23 Heat of formation + Delta-G solvation = 3.706634 kcal Electronic energy + Delta-G solvation = -28733.714893 eV Core-core repulsion = 24890.910807 eV Total energy + Delta-G solvation = -3842.804086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.28966 -39.45331 -37.81807 -35.55450 -34.91398 -33.04743 -32.34222 -31.21004 -30.84650 -29.74719 -28.61195 -26.95815 -25.80162 -24.40760 -23.12525 -22.86048 -22.58682 -21.14630 -20.88524 -19.90076 -17.76438 -17.37287 -16.36369 -15.92794 -15.90898 -15.66177 -15.37912 -15.26589 -14.97102 -14.35548 -14.18480 -14.02100 -13.86083 -13.69001 -13.52454 -13.42074 -13.26563 -12.84721 -12.80205 -12.56058 -12.31707 -12.28848 -12.17707 -12.02609 -11.59307 -11.43087 -11.40884 -11.30140 -11.22991 -11.07590 -10.93785 -10.74905 -10.42295 -10.33716 -9.85919 -9.81611 -9.60606 -9.17778 -8.95337 -8.74810 -8.70021 -8.08175 -6.77625 -5.82851 -3.21490 1.03998 1.13383 2.58125 2.66720 3.36009 3.39787 3.43391 3.45841 3.59416 4.45202 4.47100 4.49595 4.60129 4.65301 4.73107 4.75516 4.91300 4.98357 5.09915 5.19195 5.22514 5.25993 5.33063 5.35127 5.37851 5.44083 5.50501 5.54141 5.56427 5.61164 5.79606 5.80900 5.82510 5.91700 5.95126 5.97166 6.04949 6.14230 6.15332 6.29984 6.31357 6.40248 6.44567 6.53160 6.70340 6.74684 6.83727 7.13698 7.22738 7.29775 7.59501 7.70257 7.79524 8.26139 8.34932 9.16445 9.79245 10.37075 11.27685 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.001712 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.644009 B =16350.118130 C =16573.065730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.061 4.061 7 C -0.104 4.104 8 H 0.097 0.903 9 C -0.147 4.147 10 C 0.514 3.486 11 O -0.547 6.547 12 N -0.719 5.719 13 C 0.157 3.843 14 C -0.167 4.167 15 C -0.124 4.124 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.112 4.112 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.401 0.599 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.093 0.907 46 H 0.254 0.746 47 H 0.023 0.977 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.052 0.948 51 H 0.122 0.878 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.146 4.911 -15.818 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.082 4.082 6 C -0.099 4.099 7 C -0.126 4.126 8 H 0.115 0.885 9 C -0.205 4.205 10 C 0.300 3.700 11 O -0.425 6.425 12 N -0.370 5.370 13 C 0.034 3.966 14 C -0.167 4.167 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.130 4.130 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.236 0.764 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.615 4.710 -16.468 27.579 hybrid contribution 0.711 -0.168 0.743 1.042 sum -20.905 4.542 -15.725 26.550 Atomic orbital electron populations 1.20788 0.91365 1.02733 1.02216 1.19918 0.96005 0.93289 1.00133 1.21023 0.94191 0.97471 1.01157 1.21076 0.94029 0.97687 1.00045 1.19882 0.95504 0.93183 0.99678 1.20399 0.90026 1.04435 0.95039 1.21265 0.92093 1.00917 0.98280 0.88470 1.21866 1.02516 0.95625 1.00444 1.20618 0.89683 0.75971 0.83767 1.90689 1.70379 1.49966 1.31484 1.46215 1.08154 1.74101 1.08533 1.20451 0.78984 1.01592 0.95547 1.20505 1.05654 0.96192 0.94388 1.23282 0.95617 0.96119 0.99498 1.19760 0.98792 0.88858 0.85701 1.44121 1.24511 1.02170 1.61009 1.19185 0.98664 0.97556 1.22172 0.91365 1.24986 0.98745 0.97908 0.98256 1.70005 1.34516 1.07232 1.43744 0.86242 0.84703 0.76989 0.78645 1.21486 1.21557 1.20462 1.20989 0.94091 0.91672 0.91526 1.20786 1.00240 0.93392 0.98450 1.21081 0.94112 0.97738 1.00087 1.21024 0.94174 0.97499 1.01015 0.91306 0.91604 0.91612 0.86220 0.85993 0.90282 0.90084 0.91089 0.91899 0.92035 0.76418 0.91757 0.91675 0.88818 0.94113 0.88884 0.93603 0.95885 0.92469 0.91738 0.92936 0.86024 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16 2 C -0.09 -0.71 5.88 -104.63 -0.62 -1.33 16 3 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 4 C -0.11 -0.90 7.96 -39.59 -0.32 -1.21 16 5 C -0.08 -0.72 4.71 -104.62 -0.49 -1.22 16 6 C -0.06 -0.59 4.19 -27.88 -0.12 -0.70 16 7 C -0.10 -0.99 2.71 -91.77 -0.25 -1.24 16 8 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.15 -1.19 8.66 37.16 0.32 -0.87 16 10 C 0.51 6.63 7.15 -10.98 -0.08 6.55 16 11 O -0.55 -9.07 15.92 5.55 0.09 -8.98 16 12 N -0.72 -9.09 5.44 -61.47 -0.33 -9.42 16 13 C 0.16 2.33 5.66 -5.19 -0.03 2.30 16 14 C -0.17 -2.80 5.22 -100.98 -0.53 -3.33 16 15 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 16 C 0.19 4.50 5.23 -5.10 -0.03 4.48 16 17 N -0.59 -14.60 3.01 -173.56 -0.52 -15.12 16 18 C -0.25 -6.67 9.71 -15.06 -0.15 -6.82 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 21 N -0.91 -25.90 11.08 55.49 0.61 -25.28 16 22 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.14 2.89 6.59 -3.44 -0.02 2.87 16 27 C -0.09 -1.52 5.95 -28.08 -0.17 -1.69 16 28 C -0.11 -0.96 9.70 -39.58 -0.38 -1.34 16 29 C -0.12 -0.94 9.70 -39.58 -0.38 -1.33 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.85 8.04 -52.48 -0.42 0.43 16 35 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.08 0.85 7.90 -51.93 -0.41 0.44 16 37 H 0.07 0.53 6.27 -51.93 -0.33 0.21 16 38 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 4.46 7.88 -40.82 -0.32 4.14 16 41 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 42 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 43 H 0.09 1.58 7.73 -52.48 -0.41 1.17 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 52 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 416.83 15.07 6.28 6.28 Total: -1.00 -31.06 416.83 -11.47 -42.53 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.89 Total: 2.72 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.68 Total: -9.22 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.24 Total: -49.82 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.06 -11.47 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677636562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.235 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds